Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46950 * 2 1 4 4 O 1.42901 * 109.47051 * 119.99405 * 2 1 3 5 5 C 1.52992 * 109.47305 * 239.99715 * 2 1 3 6 6 N 1.46502 * 109.47386 * 179.97438 * 5 2 1 7 7 S 1.65603 * 120.00138 * 164.48627 * 6 5 2 8 8 O 1.42101 * 106.40169 * 307.77983 * 7 6 5 9 9 O 1.42096 * 106.40124 * 174.85641 * 7 6 5 10 10 C 1.76205 * 107.21469 * 61.31696 * 7 6 5 11 11 C 1.37632 * 120.12538 * 244.49693 * 10 7 6 12 12 C 1.38609 * 120.24767 * 180.30080 * 11 10 7 13 13 C 1.38663 * 120.49908 * 359.44378 * 12 11 10 14 14 C 1.37588 * 120.24716 * 0.55883 * 13 12 11 15 15 C 1.40694 * 120.12573 * 64.52226 * 10 7 6 16 16 C 1.41394 * 120.24776 * 359.95511 * 15 10 7 17 17 H 1.08001 * 120.00046 * 331.94642 * 16 15 10 18 18 C 1.39946 * 120.00083 * 151.94829 * 16 15 10 19 19 N 1.30819 * 119.99732 * 347.92209 * 18 16 15 20 20 Si 1.86800 * 120.00064 * 167.92903 * 18 16 15 21 21 H 1.48503 * 109.47286 * 89.99370 * 20 18 16 22 22 H 1.48495 * 109.47099 * 209.99819 * 20 18 16 23 23 H 1.48502 * 109.46976 * 329.99926 * 20 18 16 24 24 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47279 * 300.00466 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.00484 * 1 2 3 27 27 H 0.96701 * 113.99396 * 60.00696 * 4 2 1 28 28 H 1.09007 * 109.47025 * 60.00347 * 5 2 1 29 29 H 1.08995 * 109.47384 * 300.00228 * 5 2 1 30 30 H 0.97001 * 119.99654 * 344.49886 * 6 5 2 31 31 H 1.08000 * 119.87979 * 0.02562 * 11 10 7 32 32 H 1.08007 * 119.74988 * 179.70289 * 12 11 10 33 33 H 1.08007 * 119.87209 * 180.30428 * 13 12 11 34 34 H 1.08003 * 120.13074 * 179.74721 * 14 13 12 35 35 H 0.97006 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0400 -0.7213 -1.2491 6 7 3.5050 -0.7207 -1.2495 7 16 4.3332 -1.7438 -2.2544 8 8 3.8111 -3.0447 -2.0215 9 8 5.7095 -1.4212 -2.1097 10 6 3.8939 -1.3199 -3.9073 11 6 3.2135 -2.2214 -4.6940 12 6 2.8721 -1.8929 -5.9966 13 6 3.2007 -0.6510 -6.5185 14 6 3.8807 0.2657 -5.7502 15 6 4.2376 -0.0590 -4.4281 16 6 4.9362 0.8753 -3.6291 17 1 4.8248 0.8572 -2.5550 18 6 5.7718 1.8235 -4.2301 19 7 6.0948 1.7043 -5.4921 20 14 6.4261 3.2592 -3.2300 21 1 7.7194 2.8796 -2.6066 22 1 6.6304 4.4301 -4.1201 23 1 5.4487 3.6090 -2.1682 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5951 1.2329 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2492 30 1 3.9899 -0.1212 -0.6609 31 1 2.9486 -3.1899 -4.2964 32 1 2.3425 -2.6083 -6.6084 33 1 2.9254 -0.4039 -7.5332 34 1 4.1393 1.2310 -6.1599 35 1 6.6743 2.3614 -5.9086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601384193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -119.415318 kcal Electronic energy + Delta-G solvation = -21143.490674 eV Core-core repulsion = 17846.701769 eV Total energy + Delta-G solvation = -3296.788905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.94599 -37.59717 -36.18819 -34.81384 -34.08516 -33.82489 -30.81091 -30.22897 -29.56707 -25.66887 -25.39141 -21.82169 -21.60342 -21.14218 -18.56190 -17.72111 -17.03146 -16.72447 -15.96778 -15.73929 -15.38286 -14.99087 -14.37335 -14.11038 -13.78652 -13.27933 -13.18845 -12.79962 -12.77358 -12.54712 -11.99099 -11.88174 -11.53192 -11.28529 -11.24225 -11.18295 -11.07577 -11.00526 -10.83891 -10.71086 -10.53457 -9.98899 -9.92414 -9.45493 -9.43604 -8.75310 -8.05265 -7.62588 -7.04865 -4.77851 1.54929 2.32608 2.71987 2.95924 2.99549 3.11066 3.76245 3.92203 4.38589 4.44611 4.68881 4.84362 5.05203 5.15452 5.29077 5.52851 5.59890 5.67542 5.87177 5.96376 6.02750 6.12641 6.22156 6.34057 6.41655 6.76175 6.93859 7.07235 7.29116 7.47344 7.54246 7.64924 7.71035 7.79317 7.87748 8.27276 8.48380 8.63324 9.87949 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.008039 C = 0.006436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.926236 B = 3482.354559 C = 4349.574758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 H 0.105 0.895 4 O -0.560 6.560 5 C 0.093 3.907 6 N -1.116 6.116 7 S 2.702 3.298 8 O -1.000 7.000 9 O -0.965 6.965 10 C -0.777 4.777 11 C -0.003 4.003 12 C -0.251 4.251 13 C -0.077 4.077 14 C -0.159 4.159 15 C 0.186 3.814 16 C -0.445 4.445 17 H 0.088 0.912 18 C 0.080 3.920 19 N -0.776 5.776 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.256 1.256 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.375 0.625 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.413 0.587 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 0.977 5.793 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.036 3.964 3 H 0.123 0.877 4 O -0.366 6.366 5 C -0.035 4.035 6 N -0.873 5.873 7 S 2.799 3.201 8 O -0.991 6.991 9 O -0.955 6.955 10 C -0.872 4.872 11 C -0.023 4.023 12 C -0.272 4.272 13 C -0.096 4.096 14 C -0.179 4.179 15 C 0.181 3.819 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.141 4.141 19 N -0.399 5.399 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.222 0.778 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.247 0.753 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.189 0.870 5.909 9.346 hybrid contribution -0.103 0.749 -0.404 0.858 sum -7.292 1.620 5.505 9.279 Atomic orbital electron populations 1.22459 0.95943 1.02822 1.03017 1.22129 0.92965 0.97119 0.84211 0.87675 1.86571 1.77440 1.29096 1.43477 1.21853 0.80906 1.01502 0.99213 1.55517 1.14220 1.59898 1.57700 1.01031 0.72907 0.72128 0.73990 1.93436 1.81252 1.38251 1.86144 1.93543 1.31158 1.84179 1.86647 1.29863 1.29438 1.04993 1.22887 1.20249 0.92365 0.96041 0.93666 1.20490 1.11772 0.98371 0.96531 1.20901 0.96889 0.94156 0.97612 1.21517 1.00872 0.99990 0.95482 1.17006 0.85027 0.87816 0.92068 1.19867 1.20787 1.11344 0.95316 0.89418 1.25965 0.94635 0.98417 0.95119 1.69782 1.25390 1.32552 1.12163 0.86170 0.80508 0.79145 0.80351 1.18629 1.19805 1.17929 0.92053 0.91655 0.91111 0.77784 0.90776 0.90748 0.75280 0.87469 0.88763 0.88833 0.85719 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.53 37.16 0.35 -1.35 16 2 C 0.10 1.13 3.68 -26.74 -0.10 1.03 16 3 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 4 O -0.56 -6.96 13.20 -35.23 -0.47 -7.42 16 5 C 0.09 1.33 5.84 -4.04 -0.02 1.30 16 6 N -1.12 -19.40 4.91 -10.61 -0.05 -19.45 16 7 S 2.70 58.99 4.94 -107.50 -0.53 58.46 16 8 O -1.00 -22.61 16.56 -57.17 -0.95 -23.56 16 9 O -0.96 -24.24 16.60 -57.17 -0.95 -25.19 16 10 C -0.78 -18.42 5.86 -38.88 -0.23 -18.64 16 11 C 0.00 -0.08 9.53 -39.67 -0.38 -0.45 16 12 C -0.25 -5.45 10.05 -39.29 -0.39 -5.84 16 13 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 14 C -0.16 -3.89 8.66 -38.88 -0.34 -4.23 16 15 C 0.19 4.68 5.55 -106.83 -0.59 4.09 16 16 C -0.44 -11.07 7.67 -37.74 -0.29 -11.36 16 17 H 0.09 2.04 5.78 -52.49 -0.30 1.73 16 18 C 0.08 1.91 5.23 -17.34 -0.09 1.82 16 19 N -0.78 -19.01 10.87 55.55 0.60 -18.40 16 20 Si 0.92 17.91 29.58 -169.99 -5.03 12.88 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.37 3.53 9.05 45.56 0.41 3.94 16 28 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.07 1.02 7.83 -51.93 -0.41 0.62 16 30 H 0.41 6.71 8.51 -34.48 -0.29 6.42 16 31 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 34 H 0.13 3.08 6.22 -52.48 -0.33 2.75 16 35 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 309.45 15.07 4.66 4.66 Total: -1.00 -31.16 309.45 -8.58 -39.74 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -3.40 Total: 14.00 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: -2.48 Total: -35.73 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.55 Total: -37.85 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -2.36 Total: -56.17 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 58.99 SS G_CDS: -0.53 Total: 58.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.16 -8.58 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601384193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.673 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds