Wall clock time and date at job start Wed Apr 15 2020 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46950 * 2 1 4 4 O 1.42901 * 109.47051 * 119.99405 * 2 1 3 5 5 C 1.52992 * 109.47305 * 239.99715 * 2 1 3 6 6 N 1.46502 * 109.47386 * 179.97438 * 5 2 1 7 7 S 1.65603 * 120.00138 * 164.48627 * 6 5 2 8 8 O 1.42101 * 106.40169 * 307.77983 * 7 6 5 9 9 O 1.42096 * 106.40124 * 174.85641 * 7 6 5 10 10 C 1.76205 * 107.21469 * 61.31696 * 7 6 5 11 11 C 1.37632 * 120.12538 * 244.49693 * 10 7 6 12 12 C 1.38609 * 120.24767 * 180.30080 * 11 10 7 13 13 C 1.38663 * 120.49908 * 359.44378 * 12 11 10 14 14 C 1.37588 * 120.24716 * 0.55883 * 13 12 11 15 15 C 1.40694 * 120.12573 * 64.52226 * 10 7 6 16 16 C 1.41394 * 120.24776 * 359.95511 * 15 10 7 17 17 H 1.08001 * 120.00046 * 331.94642 * 16 15 10 18 18 C 1.39946 * 120.00083 * 151.94829 * 16 15 10 19 19 N 1.30819 * 119.99732 * 347.92209 * 18 16 15 20 20 Si 1.86800 * 120.00064 * 167.92903 * 18 16 15 21 21 H 1.48503 * 109.47286 * 89.99370 * 20 18 16 22 22 H 1.48495 * 109.47099 * 209.99819 * 20 18 16 23 23 H 1.48502 * 109.46976 * 329.99926 * 20 18 16 24 24 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47279 * 300.00466 * 1 2 3 26 26 H 1.09001 * 109.46950 * 60.00484 * 1 2 3 27 27 H 0.96701 * 113.99396 * 60.00696 * 4 2 1 28 28 H 1.09007 * 109.47025 * 60.00347 * 5 2 1 29 29 H 1.08995 * 109.47384 * 300.00228 * 5 2 1 30 30 H 0.97001 * 119.99654 * 344.49886 * 6 5 2 31 31 H 1.08000 * 119.87979 * 0.02562 * 11 10 7 32 32 H 1.08007 * 119.74988 * 179.70289 * 12 11 10 33 33 H 1.08007 * 119.87209 * 180.30428 * 13 12 11 34 34 H 1.08003 * 120.13074 * 179.74721 * 14 13 12 35 35 H 0.97006 * 119.99578 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0400 -0.7213 -1.2491 6 7 3.5050 -0.7207 -1.2495 7 16 4.3332 -1.7438 -2.2544 8 8 3.8111 -3.0447 -2.0215 9 8 5.7095 -1.4212 -2.1097 10 6 3.8939 -1.3199 -3.9073 11 6 3.2135 -2.2214 -4.6940 12 6 2.8721 -1.8929 -5.9966 13 6 3.2007 -0.6510 -6.5185 14 6 3.8807 0.2657 -5.7502 15 6 4.2376 -0.0590 -4.4281 16 6 4.9362 0.8753 -3.6291 17 1 4.8248 0.8572 -2.5550 18 6 5.7718 1.8235 -4.2301 19 7 6.0948 1.7043 -5.4921 20 14 6.4261 3.2592 -3.2300 21 1 7.7194 2.8796 -2.6066 22 1 6.6304 4.4301 -4.1201 23 1 5.4487 3.6090 -2.1682 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5951 1.2329 28 1 1.6767 -0.2074 -2.1392 29 1 1.6767 -1.7489 -1.2492 30 1 3.9899 -0.1212 -0.6609 31 1 2.9486 -3.1899 -4.2964 32 1 2.3425 -2.6083 -6.6084 33 1 2.9254 -0.4039 -7.5332 34 1 4.1393 1.2310 -6.1599 35 1 6.6743 2.3614 -5.9086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601384193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:02 Heat of formation + Delta-G solvation = -143.598343 kcal Electronic energy + Delta-G solvation = -21144.539328 eV Core-core repulsion = 17846.701769 eV Total energy + Delta-G solvation = -3297.837560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.38950 -38.93968 -37.99746 -36.65470 -35.71583 -35.23160 -32.04586 -31.73354 -31.34462 -27.38051 -26.56834 -23.45001 -22.97213 -22.68974 -20.20638 -19.50923 -18.48006 -18.23870 -17.48456 -17.16224 -16.71065 -16.46581 -16.01879 -15.56968 -15.11517 -14.94252 -14.76262 -14.47215 -13.97972 -13.64613 -13.47644 -13.24296 -13.00201 -12.94177 -12.87350 -12.83747 -12.78342 -12.64313 -12.47276 -12.13757 -11.72493 -11.65802 -11.19457 -11.16420 -10.99767 -10.20675 -9.84048 -9.43814 -8.80405 -6.61893 -0.15103 0.53117 0.97210 1.36320 1.48040 1.52437 2.15238 2.36232 2.63052 2.99474 3.45697 3.56987 3.74789 3.93293 4.13482 4.27245 4.34749 4.50349 4.54789 4.70369 4.71992 4.87375 4.96094 5.07248 5.15128 5.21354 5.29951 5.36915 5.51858 5.70760 5.82575 6.00745 6.07959 6.22168 6.47504 6.67043 6.83369 6.87676 8.15562 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.008039 C = 0.006436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.926236 B = 3482.354559 C = 4349.574758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.104 0.896 4 O -0.574 6.574 5 C 0.085 3.915 6 N -1.106 6.106 7 S 2.721 3.279 8 O -1.009 7.009 9 O -1.003 7.003 10 C -0.792 4.792 11 C -0.016 4.016 12 C -0.251 4.251 13 C -0.075 4.075 14 C -0.187 4.187 15 C 0.161 3.839 16 C -0.474 4.474 17 H 0.094 0.906 18 C 0.038 3.962 19 N -0.808 5.808 20 Si 0.975 3.025 21 H -0.268 1.268 22 H -0.259 1.259 23 H -0.243 1.243 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.387 0.613 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 1.213 6.368 11.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.042 3.958 3 H 0.121 0.879 4 O -0.382 6.382 5 C -0.042 4.042 6 N -0.866 5.866 7 S 2.818 3.182 8 O -1.000 7.000 9 O -0.993 6.993 10 C -0.886 4.886 11 C -0.036 4.036 12 C -0.271 4.271 13 C -0.094 4.094 14 C -0.207 4.207 15 C 0.157 3.843 16 C -0.502 4.502 17 H 0.111 0.889 18 C -0.180 4.180 19 N -0.432 5.432 20 Si 0.794 3.206 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.166 1.166 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.237 0.763 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.255 0.745 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.513 1.092 6.463 10.744 hybrid contribution 0.222 0.560 -0.610 0.857 sum -8.290 1.652 5.854 10.282 Atomic orbital electron populations 1.22405 0.93646 1.03820 1.03732 1.22098 0.94584 0.96478 0.82639 0.87850 1.86546 1.77905 1.30248 1.43459 1.22163 0.78767 1.02477 1.00782 1.55150 1.15653 1.59342 1.56483 1.00305 0.72105 0.72195 0.73636 1.93414 1.81239 1.39138 1.86175 1.93485 1.33976 1.84806 1.87079 1.30141 1.29330 1.04821 1.24313 1.20580 0.92265 0.96523 0.94213 1.20901 1.11000 0.98665 0.96497 1.21251 0.95550 0.93896 0.98683 1.21578 1.02607 1.00437 0.96047 1.17318 0.85656 0.88619 0.92754 1.20158 1.21806 1.12474 0.95803 0.88850 1.26821 0.94551 1.00511 0.96115 1.69821 1.26196 1.33667 1.13490 0.85294 0.79566 0.76363 0.79347 1.19322 1.18257 1.16576 0.90971 0.90720 0.90592 0.76344 0.90956 0.90024 0.74503 0.85913 0.85447 0.85975 0.86768 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 9.53 71.98 0.69 -2.16 16 2 C 0.10 2.22 3.68 30.59 0.11 2.34 16 3 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 4 O -0.57 -13.17 13.20 -148.98 -1.97 -15.14 16 5 C 0.08 2.31 5.84 86.38 0.50 2.82 16 6 N -1.11 -37.80 4.91 -187.49 -0.92 -38.72 16 7 S 2.72 118.69 4.94 -56.49 -0.28 118.41 16 8 O -1.01 -44.91 16.56 -128.00 -2.12 -47.03 16 9 O -1.00 -51.15 16.60 -128.00 -2.13 -53.28 16 10 C -0.79 -37.59 5.86 22.73 0.13 -37.45 16 11 C -0.02 -0.71 9.53 22.22 0.21 -0.50 16 12 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 13 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 14 C -0.19 -9.24 8.66 22.73 0.20 -9.04 16 15 C 0.16 8.24 5.55 -21.29 -0.12 8.12 16 16 C -0.47 -23.96 7.67 23.46 0.18 -23.78 16 17 H 0.09 4.40 5.78 -2.91 -0.02 4.39 16 18 C 0.04 1.83 5.23 85.26 0.45 2.28 16 19 N -0.81 -40.29 10.87 21.83 0.24 -40.05 16 20 Si 0.98 36.50 29.58 68.60 2.03 38.53 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 23 H -0.24 -8.48 7.11 99.48 0.71 -7.77 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.39 6.52 9.05 -74.06 -0.67 5.85 16 28 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 2.11 7.83 -2.39 -0.02 2.10 16 30 H 0.42 13.42 8.51 -96.74 -0.82 12.60 16 31 H 0.12 4.92 7.33 -2.91 -0.02 4.89 16 32 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.11 5.79 6.22 -2.91 -0.02 5.77 16 35 H 0.30 13.18 8.30 -92.70 -0.77 12.41 16 Total: -1.00 -66.47 309.45 -2.70 -69.18 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.36 Total: 38.66 kcal Atomic # 6 Polarization: -73.37 SS G_CDS: 2.80 Total: -70.57 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.68 Total: -78.77 kcal Atomic # 8 Polarization: -109.23 SS G_CDS: -6.21 Total: -115.45 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 118.69 SS G_CDS: -0.28 Total: 118.41 kcal Total: -66.47 -2.70 -69.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601384193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.420 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds