Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47525 * 2 1 4 4 C 1.53004 * 109.47547 * 239.99756 * 2 1 3 5 5 O 1.42900 * 109.47178 * 305.00382 * 4 2 1 6 6 N 1.46508 * 109.47033 * 119.99895 * 2 1 3 7 7 S 1.65598 * 119.99894 * 265.00129 * 6 2 1 8 8 O 1.42100 * 106.39857 * 178.53831 * 7 6 2 9 9 O 1.42101 * 106.40290 * 311.45580 * 7 6 2 10 10 C 1.76197 * 107.21687 * 65.00003 * 7 6 2 11 11 C 1.38659 * 119.87515 * 269.72114 * 10 7 6 12 12 C 1.38611 * 120.50113 * 179.72214 * 11 10 7 13 13 C 1.37644 * 120.24724 * 0.55889 * 12 11 10 14 14 C 1.40698 * 119.74503 * 359.72057 * 13 12 11 15 15 C 1.41396 * 120.24383 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99459 * 150.21842 * 15 14 13 17 17 C 1.39941 * 120.00349 * 330.22486 * 15 14 13 18 18 N 1.30815 * 120.00552 * 161.72350 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 341.72432 * 17 15 14 20 20 H 1.48494 * 109.47289 * 95.41281 * 19 17 15 21 21 H 1.48502 * 109.46961 * 215.41131 * 19 17 15 22 22 H 1.48500 * 109.47139 * 335.41147 * 19 17 15 23 23 C 1.37597 * 119.87691 * 90.00281 * 10 7 6 24 24 H 1.09009 * 109.46753 * 60.00374 * 1 2 3 25 25 H 1.09001 * 109.47210 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47559 * 300.00190 * 1 2 3 27 27 H 1.09003 * 109.46880 * 65.00440 * 4 2 1 28 28 H 1.09001 * 109.47417 * 185.00308 * 4 2 1 29 29 H 0.96695 * 114.00446 * 179.97438 * 5 4 2 30 30 H 0.97002 * 120.00005 * 84.99809 * 6 2 1 31 31 H 1.07997 * 119.74672 * 0.02562 * 11 10 7 32 32 H 1.07997 * 119.88031 * 180.25835 * 12 11 10 33 33 H 1.08002 * 120.12644 * 179.74698 * 13 12 11 34 34 H 0.96995 * 120.00755 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.12881 * 359.96816 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1963 7 16 2.4121 0.1772 2.5505 8 8 2.8122 -0.7698 3.5315 9 8 3.2436 1.2443 2.1156 10 6 0.9274 0.9147 3.1474 11 6 0.5558 2.1751 2.7046 12 6 -0.6124 2.7651 3.1612 13 6 -1.4114 2.1088 4.0697 14 6 -1.0414 0.8319 4.5304 15 6 -1.8546 0.1480 5.4632 16 1 -1.8826 -0.9316 5.4657 17 6 -2.6233 0.8701 6.3831 18 7 -3.6259 0.2928 6.9936 19 14 -2.2176 2.6584 6.7392 20 1 -3.0649 3.5362 5.8927 21 1 -2.4796 2.9496 8.1716 22 1 -0.7859 2.9109 6.4365 23 6 0.1440 0.2403 4.0555 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7518 -0.1583 -2.1370 28 1 3.1264 -0.7996 -1.2055 29 1 1.7500 -2.5462 -2.0780 30 1 2.1109 -1.6562 1.1950 31 1 1.1789 2.6989 1.9949 32 1 -0.8943 3.7454 2.8064 33 1 -2.3192 2.5720 4.4273 34 1 -4.1585 0.7931 7.6315 35 1 0.4373 -0.7396 4.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -113.327118 kcal Electronic energy + Delta-G solvation = -20830.941941 eV Core-core repulsion = 17534.417040 eV Total energy + Delta-G solvation = -3296.524901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -38.04937 -37.84344 -36.72732 -35.39233 -34.95062 -33.78596 -30.75441 -30.17081 -29.89697 -26.39041 -25.38371 -22.38135 -21.29133 -20.87610 -19.35249 -18.22317 -17.51627 -16.99416 -16.32411 -16.11233 -15.33604 -14.96383 -14.74276 -14.52687 -13.89718 -13.68557 -13.20320 -13.12162 -12.88193 -12.54511 -12.21988 -11.97742 -11.78101 -11.69506 -11.63900 -11.48229 -11.30457 -11.08022 -10.84908 -10.73134 -10.36449 -10.19033 -10.01379 -9.79375 -9.40728 -9.17781 -8.27169 -7.87813 -7.08895 -4.64195 0.92492 1.90936 2.41108 2.98995 3.11390 3.20517 3.43070 3.85265 4.09805 4.11879 4.33157 4.77241 4.83029 5.04653 5.15006 5.19602 5.37832 5.54221 5.67071 5.81464 5.99873 6.04924 6.19899 6.27349 6.45832 6.56705 6.58116 6.85997 7.06038 7.19166 7.22715 7.38442 7.45294 7.61776 7.77061 8.18148 8.42304 8.61310 9.93001 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.005309 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.852932 B = 5273.087916 C = 5457.200130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.152 3.848 3 H 0.101 0.899 4 C 0.073 3.927 5 O -0.566 6.566 6 N -1.111 6.111 7 S 2.688 3.312 8 O -0.969 6.969 9 O -0.975 6.975 10 C -0.624 4.624 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.198 4.198 14 C 0.074 3.926 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.243 1.243 23 C -0.099 4.099 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.377 0.623 30 H 0.419 0.581 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.288 0.712 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 0.102 -13.729 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.045 3.955 3 H 0.119 0.881 4 C -0.007 4.007 5 O -0.371 6.371 6 N -0.870 5.870 7 S 2.783 3.217 8 O -0.960 6.960 9 O -0.965 6.965 10 C -0.715 4.715 11 C -0.179 4.179 12 C -0.111 4.111 13 C -0.218 4.218 14 C 0.069 3.931 15 C -0.471 4.471 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.423 5.423 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.120 4.120 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.224 0.776 30 H 0.253 0.747 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.937 0.505 -12.628 14.417 hybrid contribution -0.599 0.388 -0.206 0.743 sum 6.338 0.893 -12.835 14.342 Atomic orbital electron populations 1.22293 0.94330 1.03643 1.03007 1.20853 0.95386 0.95687 0.83594 0.88137 1.22447 0.96831 0.84244 0.97174 1.86512 1.72917 1.27240 1.50459 1.55560 1.83924 1.19922 1.27593 1.01721 0.74600 0.73166 0.72231 1.93554 1.81901 1.62278 1.58234 1.93516 1.65120 1.55980 1.81839 1.29940 1.22042 1.07024 1.12473 1.20026 0.98732 0.94519 1.04667 1.20688 0.94776 0.98194 0.97430 1.21294 1.00719 0.98242 1.01554 1.17788 0.90940 0.91680 0.92646 1.19525 1.18595 0.96577 1.12381 0.88675 1.26154 0.92037 1.00918 0.94474 1.69673 1.12063 1.39715 1.20884 0.86371 0.82034 0.81385 0.76964 1.19447 1.21341 1.16646 1.20845 0.93650 0.99767 0.97762 0.92103 0.91146 0.90681 0.92478 0.92920 0.77602 0.74694 0.87146 0.87954 0.87660 0.90184 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.32 37.16 0.35 -1.93 16 2 C 0.15 1.87 3.31 -67.93 -0.23 1.65 16 3 H 0.10 1.19 7.50 -51.93 -0.39 0.80 16 4 C 0.07 0.67 6.84 37.16 0.25 0.92 16 5 O -0.57 -5.31 12.49 -35.23 -0.44 -5.75 16 6 N -1.11 -15.66 5.46 -4.89 -0.03 -15.68 16 7 S 2.69 48.31 5.72 -107.50 -0.61 47.70 16 8 O -0.97 -19.99 17.27 -57.17 -0.99 -20.97 16 9 O -0.97 -18.78 16.60 -57.17 -0.95 -19.72 16 10 C -0.62 -12.76 5.05 -39.66 -0.20 -12.96 16 11 C -0.16 -3.13 8.61 -39.29 -0.34 -3.47 16 12 C -0.09 -1.87 10.02 -39.66 -0.40 -2.27 16 13 C -0.20 -4.57 7.18 -38.87 -0.28 -4.85 16 14 C 0.07 1.81 5.11 -106.82 -0.55 1.27 16 15 C -0.44 -11.64 9.57 -37.74 -0.36 -12.00 16 16 H 0.10 2.60 8.06 -52.48 -0.42 2.18 16 17 C 0.08 2.14 5.40 -17.35 -0.09 2.05 16 18 N -0.80 -20.72 13.93 55.55 0.77 -19.95 16 19 Si 0.91 20.17 24.52 -169.99 -4.17 16.00 16 20 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 21 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 23 C -0.10 -2.27 9.26 -38.87 -0.36 -2.63 16 24 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 25 H 0.07 0.97 7.56 -51.93 -0.39 0.57 16 26 H 0.07 1.16 6.18 -51.93 -0.32 0.83 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.38 1.78 9.12 45.56 0.42 2.20 16 30 H 0.42 5.35 8.58 -34.47 -0.30 5.05 16 31 H 0.11 1.93 7.59 -52.49 -0.40 1.53 16 32 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.11 2.39 4.73 -52.49 -0.25 2.14 16 34 H 0.29 6.72 8.30 -40.82 -0.34 6.39 16 35 H 0.12 2.65 7.60 -52.49 -0.40 2.25 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -31.44 304.04 -7.34 -38.79 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.31 Total: 9.26 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: -2.20 Total: -34.24 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.75 Total: -35.63 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -2.38 Total: -46.45 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.17 Total: 16.00 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.61 Total: 47.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.44 -7.34 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.542 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds