Wall clock time and date at job start Wed Apr 15 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47525 * 2 1 4 4 C 1.53004 * 109.47547 * 239.99756 * 2 1 3 5 5 O 1.42900 * 109.47178 * 305.00382 * 4 2 1 6 6 N 1.46508 * 109.47033 * 119.99895 * 2 1 3 7 7 S 1.65598 * 119.99894 * 265.00129 * 6 2 1 8 8 O 1.42100 * 106.39857 * 178.53831 * 7 6 2 9 9 O 1.42101 * 106.40290 * 311.45580 * 7 6 2 10 10 C 1.76197 * 107.21687 * 65.00003 * 7 6 2 11 11 C 1.38659 * 119.87515 * 269.72114 * 10 7 6 12 12 C 1.38611 * 120.50113 * 179.72214 * 11 10 7 13 13 C 1.37644 * 120.24724 * 0.55889 * 12 11 10 14 14 C 1.40698 * 119.74503 * 359.72057 * 13 12 11 15 15 C 1.41396 * 120.24383 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99459 * 150.21842 * 15 14 13 17 17 C 1.39941 * 120.00349 * 330.22486 * 15 14 13 18 18 N 1.30815 * 120.00552 * 161.72350 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 341.72432 * 17 15 14 20 20 H 1.48494 * 109.47289 * 95.41281 * 19 17 15 21 21 H 1.48502 * 109.46961 * 215.41131 * 19 17 15 22 22 H 1.48500 * 109.47139 * 335.41147 * 19 17 15 23 23 C 1.37597 * 119.87691 * 90.00281 * 10 7 6 24 24 H 1.09009 * 109.46753 * 60.00374 * 1 2 3 25 25 H 1.09001 * 109.47210 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47559 * 300.00190 * 1 2 3 27 27 H 1.09003 * 109.46880 * 65.00440 * 4 2 1 28 28 H 1.09001 * 109.47417 * 185.00308 * 4 2 1 29 29 H 0.96695 * 114.00446 * 179.97438 * 5 4 2 30 30 H 0.97002 * 120.00005 * 84.99809 * 6 2 1 31 31 H 1.07997 * 119.74672 * 0.02562 * 11 10 7 32 32 H 1.07997 * 119.88031 * 180.25835 * 12 11 10 33 33 H 1.08002 * 120.12644 * 179.74698 * 13 12 11 34 34 H 0.96995 * 120.00755 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.12881 * 359.96816 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1963 7 16 2.4121 0.1772 2.5505 8 8 2.8122 -0.7698 3.5315 9 8 3.2436 1.2443 2.1156 10 6 0.9274 0.9147 3.1474 11 6 0.5558 2.1751 2.7046 12 6 -0.6124 2.7651 3.1612 13 6 -1.4114 2.1088 4.0697 14 6 -1.0414 0.8319 4.5304 15 6 -1.8546 0.1480 5.4632 16 1 -1.8826 -0.9316 5.4657 17 6 -2.6233 0.8701 6.3831 18 7 -3.6259 0.2928 6.9936 19 14 -2.2176 2.6584 6.7392 20 1 -3.0649 3.5362 5.8927 21 1 -2.4796 2.9496 8.1716 22 1 -0.7859 2.9109 6.4365 23 6 0.1440 0.2403 4.0555 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7518 -0.1583 -2.1370 28 1 3.1264 -0.7996 -1.2055 29 1 1.7500 -2.5462 -2.0780 30 1 2.1109 -1.6562 1.1950 31 1 1.1789 2.6989 1.9949 32 1 -0.8943 3.7454 2.8064 33 1 -2.3192 2.5720 4.4273 34 1 -4.1585 0.7931 7.6315 35 1 0.4373 -0.7396 4.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:07 Heat of formation + Delta-G solvation = -139.879148 kcal Electronic energy + Delta-G solvation = -20832.093323 eV Core-core repulsion = 17534.417040 eV Total energy + Delta-G solvation = -3297.676283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70814 -38.81515 -38.21861 -36.94207 -35.88059 -35.62320 -32.55351 -31.88304 -30.97985 -27.31655 -27.13990 -24.08585 -22.71364 -22.18512 -20.77459 -19.79423 -18.72196 -18.06845 -18.03041 -17.31714 -16.98310 -16.64137 -16.17381 -15.57886 -15.38627 -14.83908 -14.70969 -14.65180 -14.23468 -14.05625 -13.63520 -13.39320 -13.29399 -13.21859 -13.10417 -13.07425 -12.85596 -12.54611 -12.36831 -12.05645 -11.79629 -11.78212 -11.56035 -11.07107 -10.82338 -10.48082 -9.97343 -9.67483 -8.97002 -6.59737 -0.53721 0.19010 0.65761 1.20210 1.35655 1.42702 2.02458 2.08094 2.41713 2.75202 3.30050 3.37427 3.52122 3.88218 4.16031 4.19701 4.33571 4.43101 4.44222 4.48651 4.69381 4.76576 4.82488 4.84170 5.01934 5.07078 5.26168 5.35082 5.43984 5.52258 5.63238 5.76449 5.99665 6.11950 6.24260 6.58571 6.69270 7.02620 8.11497 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.005309 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.852932 B = 5273.087916 C = 5457.200130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.139 3.861 3 H 0.111 0.889 4 C 0.076 3.924 5 O -0.587 6.587 6 N -1.098 6.098 7 S 2.715 3.285 8 O -0.999 6.999 9 O -0.979 6.979 10 C -0.630 4.630 11 C -0.137 4.137 12 C -0.094 4.094 13 C -0.204 4.204 14 C 0.055 3.945 15 C -0.485 4.485 16 H 0.059 0.941 17 C 0.049 3.951 18 N -0.843 5.843 19 Si 0.958 3.042 20 H -0.247 1.247 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.121 4.121 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.398 0.602 30 H 0.426 0.574 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.296 0.704 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 2.342 -16.503 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.032 3.968 3 H 0.129 0.871 4 C -0.003 4.003 5 O -0.396 6.396 6 N -0.860 5.860 7 S 2.807 3.193 8 O -0.989 6.989 9 O -0.969 6.969 10 C -0.719 4.719 11 C -0.158 4.158 12 C -0.113 4.113 13 C -0.223 4.223 14 C 0.051 3.949 15 C -0.515 4.515 16 H 0.077 0.923 17 C -0.166 4.166 18 N -0.468 5.468 19 Si 0.780 3.220 20 H -0.172 1.172 21 H -0.201 1.201 22 H -0.180 1.180 23 C -0.142 4.142 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.248 0.752 30 H 0.262 0.738 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.334 2.743 -15.413 17.735 hybrid contribution -0.881 -0.338 0.381 1.017 sum 7.453 2.405 -15.031 16.949 Atomic orbital electron populations 1.22260 0.95106 1.02844 1.02864 1.21226 0.94828 0.96723 0.83990 0.87090 1.22421 0.97286 0.84343 0.96241 1.86460 1.73351 1.27652 1.52098 1.55287 1.83626 1.20233 1.26872 1.00949 0.73480 0.72663 0.72249 1.93515 1.82178 1.62943 1.60262 1.93506 1.64778 1.56620 1.82000 1.30411 1.22519 1.07470 1.11481 1.20594 0.98272 0.93687 1.03200 1.21160 0.94250 0.99734 0.96133 1.21493 1.01300 0.97558 1.01994 1.17930 0.91351 0.92849 0.92740 1.19481 1.21599 0.95196 1.15180 0.92311 1.26799 0.91604 1.04361 0.93862 1.69699 1.13320 1.41417 1.22409 0.85607 0.81101 0.77492 0.77794 1.17164 1.20068 1.17986 1.20841 0.94090 1.00021 0.99266 0.89633 0.92348 0.93348 0.89664 0.91809 0.75223 0.73773 0.83686 0.83753 0.87401 0.89340 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.32 71.98 0.67 -3.43 16 2 C 0.14 2.97 3.31 44.99 0.15 3.11 16 3 H 0.11 2.16 7.50 -2.39 -0.02 2.14 16 4 C 0.08 1.11 6.84 71.98 0.49 1.60 16 5 O -0.59 -9.28 12.49 -148.98 -1.86 -11.14 16 6 N -1.10 -28.69 5.46 -169.38 -0.93 -29.62 16 7 S 2.71 93.10 5.72 -56.49 -0.32 92.77 16 8 O -1.00 -40.87 17.27 -128.00 -2.21 -43.08 16 9 O -0.98 -34.71 16.60 -128.00 -2.12 -36.84 16 10 C -0.63 -25.02 5.05 22.22 0.11 -24.91 16 11 C -0.14 -4.97 8.61 22.46 0.19 -4.77 16 12 C -0.09 -3.53 10.02 22.22 0.22 -3.31 16 13 C -0.20 -9.17 7.18 22.73 0.16 -9.01 16 14 C 0.05 2.77 5.11 -21.29 -0.11 2.66 16 15 C -0.49 -27.17 9.57 23.46 0.22 -26.95 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C 0.05 2.60 5.40 85.26 0.46 3.07 16 18 N -0.84 -45.69 13.93 21.82 0.30 -45.39 16 19 Si 0.96 41.59 24.52 68.60 1.68 43.27 16 20 H -0.25 -9.77 6.71 99.48 0.67 -9.10 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.26 -11.51 6.86 99.48 0.68 -10.82 16 23 C -0.12 -5.70 9.26 22.73 0.21 -5.49 16 24 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.06 1.52 7.56 -2.39 -0.02 1.50 16 26 H 0.05 1.40 6.18 -2.39 -0.01 1.38 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.40 2.52 9.12 -74.06 -0.68 1.85 16 30 H 0.43 10.20 8.58 -96.74 -0.83 9.37 16 31 H 0.15 4.30 7.59 -2.91 -0.02 4.28 16 32 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.11 4.75 4.73 -2.91 -0.01 4.73 16 34 H 0.30 14.33 8.30 -92.71 -0.77 13.56 16 35 H 0.11 5.18 7.60 -2.91 -0.02 5.16 16 Total: -1.00 -69.95 304.04 -3.10 -73.05 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.43 Total: 24.38 kcal Atomic # 6 Polarization: -70.20 SS G_CDS: 2.79 Total: -67.41 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -0.62 Total: -75.01 kcal Atomic # 8 Polarization: -84.86 SS G_CDS: -6.20 Total: -91.05 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.68 Total: 43.27 kcal Atomic # 16 Polarization: 93.10 SS G_CDS: -0.32 Total: 92.77 kcal Total: -69.95 -3.10 -73.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.832 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds