Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48504 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47225 * 299.99783 * 3 2 1 6 6 H 1.48500 * 109.47252 * 59.99927 * 3 2 1 7 7 C 1.38944 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 201.12564 * 7 2 1 9 9 N 1.37104 * 119.99955 * 21.13063 * 7 2 1 10 10 C 1.46499 * 120.00024 * 16.25580 * 9 7 2 11 11 C 1.50704 * 109.46876 * 264.14184 * 10 9 7 12 12 O 1.20824 * 119.99731 * 359.97438 * 11 10 9 13 13 O 1.34221 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99777 * 196.25413 * 9 7 2 15 15 O 1.21290 * 119.99998 * 359.97438 * 14 9 7 16 16 C 1.50703 * 119.99862 * 180.27641 * 14 9 7 17 17 N 1.46497 * 109.46964 * 179.72362 * 16 14 9 18 18 C 1.34770 * 124.17675 * 269.72074 * 17 16 14 19 19 O 1.21228 * 127.15844 * 0.02562 * 18 17 16 20 20 C 1.51586 * 105.68364 * 179.97438 * 18 17 16 21 21 N 1.47314 * 103.59045 * 0.32007 * 20 18 17 22 22 C 1.33793 * 124.17569 * 90.02626 * 17 16 14 23 23 O 1.21534 * 123.77329 * 359.95758 * 22 17 16 24 24 H 0.97000 * 119.99565 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47284 * 24.13952 * 10 9 7 26 26 H 1.08998 * 109.47307 * 144.13756 * 10 9 7 27 27 H 0.96697 * 117.00159 * 179.97438 * 13 11 10 28 28 H 1.09000 * 109.46774 * 299.72211 * 16 14 9 29 29 H 1.09002 * 109.46865 * 59.72331 * 16 14 9 30 30 H 1.09008 * 110.76374 * 241.71647 * 20 18 17 31 31 H 1.08995 * 110.56801 * 118.83465 * 20 18 17 32 32 H 0.97006 * 126.68633 * 179.77198 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3924 -2.3509 -0.4270 10 6 0.1546 -2.2708 -1.2065 11 6 -1.0291 -2.4276 -0.2870 12 8 -0.8563 -2.5901 0.8977 13 8 -2.2751 -2.3877 -0.7844 14 6 1.9253 -3.5527 -0.1301 15 8 2.9503 -3.6190 0.5149 16 6 1.2511 -4.8140 -0.6053 17 7 2.0235 -5.9773 -0.1622 18 6 3.0145 -6.5451 -0.8774 19 8 3.4200 -6.2025 -1.9673 20 6 3.5176 -7.7006 -0.0351 21 7 2.6670 -7.6491 1.1665 22 6 1.8282 -6.6107 1.0000 23 8 0.9861 -6.2852 1.8137 24 1 -0.4849 0.8401 -0.0004 25 1 0.1014 -1.3031 -1.7054 26 1 0.1430 -3.0653 -1.9526 27 1 -3.0023 -2.4934 -0.1558 28 1 0.2446 -4.8665 -0.1902 29 1 1.1953 -4.8081 -1.6939 30 1 4.5653 -7.5580 0.2303 31 1 3.3817 -8.6456 -0.5610 32 1 2.7045 -8.2474 1.9292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -138.582374 kcal Electronic energy + Delta-G solvation = -23497.787187 eV Core-core repulsion = 19653.873922 eV Total energy + Delta-G solvation = -3843.913265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.10762 -39.46247 -38.34792 -38.14013 -35.87162 -35.37532 -34.67958 -34.13447 -31.86900 -28.65306 -27.74506 -27.33499 -24.64786 -22.69828 -21.34746 -20.89823 -19.05963 -17.82138 -17.36952 -17.18726 -16.88489 -16.47515 -16.05302 -15.71781 -15.30572 -15.05266 -14.65127 -14.48881 -14.04548 -13.95915 -13.81609 -13.73072 -13.31027 -12.54726 -12.17846 -11.79473 -11.69026 -11.47604 -11.01505 -10.78874 -10.46097 -10.38409 -10.36182 -10.08188 -9.92192 -9.69067 -9.44490 -9.10146 -8.54985 -8.00032 -6.50802 -3.95331 1.81434 2.31782 3.08754 3.19242 3.23468 3.28983 3.31121 3.39086 3.55550 3.98495 4.11467 4.18830 4.64681 4.84056 4.96749 4.99698 5.26440 5.40062 5.50803 5.71395 5.76924 5.87293 6.38560 6.52120 6.83370 7.23939 7.46247 7.50383 7.52539 7.86199 8.26568 8.32755 8.97705 9.00846 9.21048 9.70106 10.57911 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.006125 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.368296 B = 4570.058096 C = 5212.671543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.304 4.304 8 H 0.109 0.891 9 N -0.425 5.425 10 C 0.141 3.859 11 C 0.484 3.516 12 O -0.497 6.497 13 O -0.534 6.534 14 C 0.448 3.552 15 O -0.566 6.566 16 C 0.104 3.896 17 N -0.553 5.553 18 C 0.525 3.475 19 O -0.472 6.472 20 C 0.067 3.933 21 N -0.733 5.733 22 C 0.705 3.295 23 O -0.533 6.533 24 H 0.272 0.728 25 H 0.134 0.866 26 H 0.078 0.922 27 H 0.393 0.607 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -12.438 -4.741 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.431 4.431 8 H 0.127 0.873 9 N -0.144 5.144 10 C 0.014 3.986 11 C 0.324 3.676 12 O -0.381 6.381 13 O -0.345 6.345 14 C 0.235 3.765 15 O -0.449 6.449 16 C -0.021 4.021 17 N -0.298 5.298 18 C 0.312 3.688 19 O -0.342 6.342 20 C -0.060 4.060 21 N -0.398 5.398 22 C 0.406 3.594 23 O -0.405 6.405 24 H 0.082 0.918 25 H 0.152 0.848 26 H 0.096 0.904 27 H 0.250 0.750 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 0.610 -11.848 -4.560 12.710 hybrid contribution -0.364 0.703 0.933 1.224 sum 0.246 -11.144 -3.628 11.723 Atomic orbital electron populations 1.69804 1.06063 1.27984 1.48111 1.25265 0.95369 1.00070 0.96597 0.85778 0.79910 0.80703 0.77806 1.19113 1.20419 1.20809 1.19774 0.97656 0.82963 1.42659 0.87298 1.43407 1.19599 1.05108 1.46331 1.20774 0.81343 1.05231 0.91248 1.23785 0.83253 0.71314 0.89263 1.90670 1.85523 1.44371 1.17556 1.84504 1.17351 1.86378 1.46272 1.20003 0.88036 0.84166 0.84278 1.90540 1.25786 1.86038 1.42522 1.21545 0.95814 0.83551 1.01209 1.45768 1.35205 1.29288 1.19554 1.20811 0.78672 0.83735 0.85545 1.90793 1.58600 1.66289 1.18550 1.22392 0.98021 0.99290 0.86344 1.45327 1.37856 1.33896 1.22765 1.15793 0.82022 0.80008 0.81601 1.91045 1.36183 1.68565 1.44713 0.91775 0.84842 0.90438 0.74995 0.87159 0.87158 0.86076 0.86249 0.71756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.98 9.26 55.50 0.51 -22.46 16 2 C 0.03 0.78 4.89 -17.47 -0.09 0.69 16 3 Si 0.93 20.51 29.60 -169.99 -5.03 15.48 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.39 9.35 -14.93 -0.14 -8.53 16 8 H 0.11 3.18 7.36 -52.49 -0.39 2.79 16 9 N -0.42 -10.78 2.18 -116.09 -0.25 -11.03 16 10 C 0.14 3.01 4.97 -5.19 -0.03 2.98 16 11 C 0.48 10.71 5.89 36.01 0.21 10.92 16 12 O -0.50 -13.19 16.81 -18.75 -0.32 -13.50 16 13 O -0.53 -9.45 13.42 -39.23 -0.53 -9.98 16 14 C 0.45 11.19 7.49 -10.98 -0.08 11.11 16 15 O -0.57 -16.04 16.07 5.55 0.09 -15.95 16 16 C 0.10 2.03 4.79 -5.19 -0.02 2.01 16 17 N -0.55 -9.89 2.09 -122.02 -0.26 -10.15 16 18 C 0.53 8.03 8.32 -10.55 -0.09 7.95 16 19 O -0.47 -8.32 17.75 5.60 0.10 -8.22 16 20 C 0.07 0.64 7.97 -4.31 -0.03 0.60 16 21 N -0.73 -8.39 6.58 -65.73 -0.43 -8.82 16 22 C 0.71 12.40 8.62 -88.02 -0.76 11.64 16 23 O -0.53 -11.67 17.48 5.34 0.09 -11.57 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.13 2.95 6.34 -51.93 -0.33 2.62 16 26 H 0.08 1.30 6.68 -51.93 -0.35 0.95 16 27 H 0.39 5.40 9.10 45.56 0.41 5.82 16 28 H 0.11 2.16 7.26 -51.93 -0.38 1.78 16 29 H 0.11 1.79 7.27 -51.93 -0.38 1.41 16 30 H 0.12 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.44 3.61 8.96 -40.82 -0.37 3.24 16 LS Contribution 292.42 15.07 4.41 4.41 Total: -1.00 -39.15 292.42 -4.39 -43.54 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -1.75 Total: 8.88 kcal Atomic # 6 Polarization: 40.40 SS G_CDS: -1.03 Total: 39.37 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.43 Total: -52.46 kcal Atomic # 8 Polarization: -58.66 SS G_CDS: -0.56 Total: -59.22 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -39.15 -4.39 -43.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.041 kcal (2) G-P(sol) polarization free energy of solvation -39.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds