Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48504 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47225 * 299.99783 * 3 2 1 6 6 H 1.48500 * 109.47252 * 59.99927 * 3 2 1 7 7 C 1.38944 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99853 * 201.12564 * 7 2 1 9 9 N 1.37104 * 119.99955 * 21.13063 * 7 2 1 10 10 C 1.46499 * 120.00024 * 16.25580 * 9 7 2 11 11 C 1.50704 * 109.46876 * 264.14184 * 10 9 7 12 12 O 1.20824 * 119.99731 * 359.97438 * 11 10 9 13 13 O 1.34221 * 119.99923 * 180.02562 * 11 10 9 14 14 C 1.34776 * 119.99777 * 196.25413 * 9 7 2 15 15 O 1.21290 * 119.99998 * 359.97438 * 14 9 7 16 16 C 1.50703 * 119.99862 * 180.27641 * 14 9 7 17 17 N 1.46497 * 109.46964 * 179.72362 * 16 14 9 18 18 C 1.34770 * 124.17675 * 269.72074 * 17 16 14 19 19 O 1.21228 * 127.15844 * 0.02562 * 18 17 16 20 20 C 1.51586 * 105.68364 * 179.97438 * 18 17 16 21 21 N 1.47314 * 103.59045 * 0.32007 * 20 18 17 22 22 C 1.33793 * 124.17569 * 90.02626 * 17 16 14 23 23 O 1.21534 * 123.77329 * 359.95758 * 22 17 16 24 24 H 0.97000 * 119.99565 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47284 * 24.13952 * 10 9 7 26 26 H 1.08998 * 109.47307 * 144.13756 * 10 9 7 27 27 H 0.96697 * 117.00159 * 179.97438 * 13 11 10 28 28 H 1.09000 * 109.46774 * 299.72211 * 16 14 9 29 29 H 1.09002 * 109.46865 * 59.72331 * 16 14 9 30 30 H 1.09008 * 110.76374 * 241.71647 * 20 18 17 31 31 H 1.08995 * 110.56801 * 118.83465 * 20 18 17 32 32 H 0.97006 * 126.68633 * 179.77198 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0344 -1.2346 0.3377 9 7 1.3924 -2.3509 -0.4270 10 6 0.1546 -2.2708 -1.2065 11 6 -1.0291 -2.4276 -0.2870 12 8 -0.8563 -2.5901 0.8977 13 8 -2.2751 -2.3877 -0.7844 14 6 1.9253 -3.5527 -0.1301 15 8 2.9503 -3.6190 0.5149 16 6 1.2511 -4.8140 -0.6053 17 7 2.0235 -5.9773 -0.1622 18 6 3.0145 -6.5451 -0.8774 19 8 3.4200 -6.2025 -1.9673 20 6 3.5176 -7.7006 -0.0351 21 7 2.6670 -7.6491 1.1665 22 6 1.8282 -6.6107 1.0000 23 8 0.9861 -6.2852 1.8137 24 1 -0.4849 0.8401 -0.0004 25 1 0.1014 -1.3031 -1.7054 26 1 0.1430 -3.0653 -1.9526 27 1 -3.0023 -2.4934 -0.1558 28 1 0.2446 -4.8665 -0.1902 29 1 1.1953 -4.8081 -1.6939 30 1 4.5653 -7.5580 0.2303 31 1 3.3817 -8.6456 -0.5610 32 1 2.7045 -8.2474 1.9292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -172.207768 kcal Electronic energy + Delta-G solvation = -23499.245294 eV Core-core repulsion = 19653.873922 eV Total energy + Delta-G solvation = -3845.371372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.35155 -41.23899 -39.96375 -39.63594 -37.20625 -37.12213 -36.44100 -35.55904 -33.84523 -30.20577 -29.44050 -28.46918 -26.53822 -23.92550 -23.00748 -22.37832 -20.67729 -19.15421 -19.05781 -18.82072 -18.59157 -17.76891 -17.63075 -17.40923 -16.66429 -16.43352 -16.27458 -16.24322 -15.73511 -15.55824 -15.26647 -14.97132 -14.62513 -14.03476 -13.85128 -13.59835 -13.47743 -13.22316 -12.72562 -12.45534 -12.17750 -12.15534 -12.11828 -11.59242 -11.48237 -11.35202 -11.01268 -10.53240 -10.32415 -9.96121 -8.49524 -6.02383 0.63666 1.06811 1.30642 1.41309 1.55754 1.62518 1.76479 1.92704 2.22868 2.32741 2.48540 2.84559 3.02729 3.05914 3.64516 3.76793 3.98713 4.21634 4.31681 4.34252 4.35063 4.66255 4.71363 4.87291 5.40439 5.82420 5.89077 5.93647 6.05941 6.27960 6.38818 7.00110 7.09712 7.19865 7.40379 7.76763 8.57250 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.006125 C = 0.005370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.368296 B = 4570.058096 C = 5212.671543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.002 3.998 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.256 1.256 6 H -0.284 1.284 7 C -0.344 4.344 8 H 0.078 0.922 9 N -0.435 5.435 10 C 0.136 3.864 11 C 0.493 3.507 12 O -0.548 6.548 13 O -0.515 6.515 14 C 0.433 3.567 15 O -0.614 6.614 16 C 0.113 3.887 17 N -0.566 5.566 18 C 0.514 3.486 19 O -0.501 6.501 20 C 0.082 3.918 21 N -0.705 5.705 22 C 0.694 3.306 23 O -0.590 6.590 24 H 0.277 0.723 25 H 0.128 0.872 26 H 0.126 0.874 27 H 0.414 0.586 28 H 0.107 0.893 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -13.575 -6.035 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.200 4.200 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.180 1.180 6 H -0.210 1.210 7 C -0.471 4.471 8 H 0.096 0.904 9 N -0.154 5.154 10 C 0.010 3.990 11 C 0.335 3.665 12 O -0.437 6.437 13 O -0.327 6.327 14 C 0.222 3.778 15 O -0.501 6.501 16 C -0.013 4.013 17 N -0.311 5.311 18 C 0.304 3.696 19 O -0.373 6.373 20 C -0.043 4.043 21 N -0.371 5.371 22 C 0.394 3.606 23 O -0.466 6.466 24 H 0.087 0.913 25 H 0.146 0.854 26 H 0.144 0.856 27 H 0.274 0.726 28 H 0.125 0.875 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.193 0.807 32 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 0.629 -13.042 -5.898 14.327 hybrid contribution -0.429 1.040 1.310 1.727 sum 0.200 -12.002 -4.587 12.850 Atomic orbital electron populations 1.69878 1.06808 1.28974 1.47138 1.26011 0.96216 1.02413 0.95350 0.84861 0.78185 0.76709 0.78369 1.19851 1.18021 1.20974 1.19660 0.97192 0.84978 1.45244 0.90393 1.43567 1.20680 1.04828 1.46366 1.20993 0.79793 1.06749 0.91422 1.23812 0.84439 0.69855 0.88375 1.90662 1.86444 1.46944 1.19671 1.84430 1.16585 1.85403 1.46312 1.20936 0.87603 0.85659 0.83628 1.90479 1.27890 1.87031 1.44654 1.21364 0.95145 0.81885 1.02864 1.45968 1.35995 1.28818 1.20299 1.21827 0.77623 0.84660 0.85514 1.90776 1.59092 1.67483 1.19937 1.22738 0.98379 0.98845 0.84383 1.45251 1.36056 1.31859 1.23886 1.16103 0.82365 0.81054 0.81033 1.91001 1.38833 1.70450 1.46349 0.91250 0.85425 0.85618 0.72598 0.87493 0.83888 0.83046 0.80704 0.69706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.31 9.26 21.66 0.20 -46.11 16 2 C 0.00 0.11 4.89 84.92 0.42 0.53 16 3 Si 1.00 42.28 29.60 68.60 2.03 44.32 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.34 -19.68 9.35 84.04 0.79 -18.90 16 8 H 0.08 4.83 7.36 -2.91 -0.02 4.81 16 9 N -0.44 -22.65 2.18 -639.60 -1.39 -24.05 16 10 C 0.14 5.75 4.97 85.63 0.43 6.18 16 11 C 0.49 21.62 5.89 71.24 0.42 22.04 16 12 O -0.55 -29.65 16.81 21.97 0.37 -29.28 16 13 O -0.52 -17.31 13.42 -51.32 -0.69 -18.00 16 14 C 0.43 22.28 7.49 87.66 0.66 22.93 16 15 O -0.61 -36.36 16.07 -3.06 -0.05 -36.41 16 16 C 0.11 4.43 4.79 85.63 0.41 4.84 16 17 N -0.57 -19.93 2.09 -777.22 -1.63 -21.56 16 18 C 0.51 14.77 8.32 87.94 0.73 15.50 16 19 O -0.50 -16.97 17.75 -2.87 -0.05 -17.02 16 20 C 0.08 1.22 7.97 85.76 0.68 1.91 16 21 N -0.70 -14.29 6.58 -480.30 -3.16 -17.45 16 22 C 0.69 24.10 8.62 179.44 1.55 25.65 16 23 O -0.59 -26.48 17.48 -3.82 -0.07 -26.54 16 24 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 25 H 0.13 5.56 6.34 -2.39 -0.02 5.55 16 26 H 0.13 3.99 6.68 -2.39 -0.02 3.97 16 27 H 0.41 10.58 9.10 -74.06 -0.67 9.90 16 28 H 0.11 4.24 7.26 -2.39 -0.02 4.23 16 29 H 0.14 4.47 7.27 -2.39 -0.02 4.46 16 30 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.18 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.46 6.16 8.96 -92.70 -0.83 5.33 16 Total: -1.00 -91.07 292.42 1.36 -89.71 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.28 Total: 21.72 kcal Atomic # 6 Polarization: 74.60 SS G_CDS: 6.08 Total: 80.68 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -5.98 Total: -109.18 kcal Atomic # 8 Polarization: -126.76 SS G_CDS: -0.49 Total: -127.25 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.32 kcal Total: -91.07 1.36 -89.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.496 kcal (2) G-P(sol) polarization free energy of solvation -91.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds