Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47128 * 179.72554 * 12 10 9 14 14 C 1.34778 * 119.99700 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50709 * 120.00069 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.85376 * 304.30208 * 16 14 13 18 18 C 1.54733 * 110.97297 * 68.09946 * 16 14 13 19 19 C 1.51748 * 102.52109 * 142.31117 * 18 16 14 20 20 C 1.47479 * 125.85517 * 164.58646 * 19 18 16 21 21 O 1.21468 * 119.99573 * 0.05517 * 20 19 18 22 22 O 1.34753 * 120.00252 * 180.02562 * 20 19 18 23 23 N 1.29059 * 108.28207 * 344.65384 * 19 18 16 24 24 O 1.41389 * 112.88193 * 359.65216 * 23 19 18 25 25 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 28 28 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 29 29 H 0.97005 * 120.00530 * 0.02562 * 13 12 10 30 30 H 1.09005 * 110.79726 * 260.59825 * 18 16 14 31 31 H 1.09004 * 110.79333 * 24.06503 * 18 16 14 32 32 H 0.96696 * 116.99698 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9765 -0.0046 14 6 1.7461 -7.2471 -0.0048 15 8 0.5537 -7.4687 0.0002 16 6 2.7254 -8.3927 -0.0111 17 1 3.4101 -8.3132 -0.8555 18 6 3.5009 -8.4658 1.3259 19 6 3.6190 -9.9610 1.5563 20 6 4.5327 -10.6187 2.5090 21 8 5.2781 -9.9496 3.1961 22 8 4.5402 -11.9618 2.6178 23 7 2.7839 -10.5584 0.7745 24 8 2.0372 -9.6599 -0.0220 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 0.0016 27 1 0.6209 -4.9225 0.8949 28 1 0.6128 -4.9187 -0.8850 29 1 3.1492 -5.7993 -0.0081 30 1 4.4860 -8.0099 1.2273 31 1 2.9337 -7.9943 2.1285 32 1 5.1565 -12.3472 3.2555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605585912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = -129.689435 kcal Electronic energy + Delta-G solvation = -21345.011916 eV Core-core repulsion = 17501.484278 eV Total energy + Delta-G solvation = -3843.527639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37193 -40.39597 -39.21229 -38.10926 -36.76466 -34.67796 -33.91018 -33.62530 -31.72437 -31.38751 -27.92112 -25.85189 -25.15658 -24.07137 -20.99401 -20.61371 -19.75244 -18.73943 -18.34968 -17.92451 -17.80598 -16.44035 -16.32279 -16.00859 -15.69800 -15.43733 -15.03576 -14.61535 -14.35238 -14.07848 -13.80293 -13.73011 -13.43042 -13.13832 -12.53530 -12.30928 -12.18884 -11.99572 -11.69661 -11.67723 -11.48994 -11.15648 -10.55907 -10.51372 -10.37057 -9.82543 -9.69733 -9.06846 -8.74001 -8.17958 -6.58130 -4.00658 0.18886 1.69677 2.12768 2.33010 2.42464 3.08937 3.14323 3.18249 3.22883 3.64354 3.67385 3.87673 4.04547 4.18025 4.36933 4.62960 4.75088 4.81212 5.09168 5.10382 5.14965 5.71304 5.75434 5.81625 5.94428 6.35625 6.43367 7.17550 7.39483 7.47222 7.83326 8.09682 8.36535 8.97148 9.30729 9.77840 10.58428 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.002874 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.711927 B = 9739.646054 C =10379.784097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.697 5.697 14 C 0.518 3.482 15 O -0.519 6.519 16 C 0.026 3.974 17 H 0.127 0.873 18 C -0.121 4.121 19 C 0.056 3.944 20 C 0.566 3.434 21 O -0.481 6.481 22 O -0.494 6.494 23 N -0.202 5.202 24 O -0.142 6.142 25 H 0.276 0.724 26 H 0.396 0.604 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.413 0.587 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -17.734 3.154 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.353 5.353 14 C 0.300 3.700 15 O -0.394 6.394 16 C -0.036 4.036 17 H 0.144 0.856 18 C -0.161 4.161 19 C -0.137 4.137 20 C 0.405 3.595 21 O -0.364 6.364 22 O -0.306 6.306 23 N 0.056 4.944 24 O -0.166 6.166 25 H 0.086 0.914 26 H 0.230 0.770 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.252 0.748 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 6.082 -18.341 2.687 19.509 hybrid contribution 0.895 1.530 0.555 1.857 sum 6.977 -16.811 3.242 18.488 Atomic orbital electron populations 1.69603 1.06047 1.28787 1.48851 1.25344 0.95673 1.00014 0.96587 0.85857 0.78794 0.80044 0.79206 1.19718 1.20810 1.19719 1.19686 0.93463 0.81936 1.48587 0.87641 1.41784 1.09534 1.04467 1.62205 1.19650 0.88275 0.84887 0.86081 1.90501 1.13613 1.86744 1.57652 1.21031 0.91673 0.85439 1.03688 1.45562 1.12044 1.04047 1.73642 1.19684 0.88949 0.83320 0.78073 1.90779 1.15826 1.84335 1.48451 1.23711 0.94215 0.86214 0.99458 0.85604 1.22843 1.04717 0.90958 0.97545 1.24686 0.97390 0.95429 0.96211 1.19091 0.79854 0.80810 0.79726 1.91012 1.38112 1.65560 1.41756 1.84634 1.62778 1.21048 1.62131 1.78619 0.99857 1.16499 0.99454 1.91464 1.43215 1.17909 1.64052 0.91424 0.76974 0.89467 0.89398 0.74817 0.85339 0.86160 0.71555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.27 13.05 55.50 0.72 -22.54 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.01 29.55 -169.99 -5.02 14.99 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.31 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.88 7.16 -52.48 -0.38 2.50 16 9 N -0.55 -12.95 5.29 -10.96 -0.06 -13.01 16 10 C 0.43 9.15 7.85 -10.98 -0.09 9.06 16 11 O -0.60 -14.35 15.24 5.54 0.08 -14.27 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 N -0.70 -10.13 5.53 -61.47 -0.34 -10.47 16 14 C 0.52 7.40 7.14 -10.98 -0.08 7.32 16 15 O -0.52 -9.43 16.58 -13.31 -0.22 -9.65 16 16 C 0.03 0.29 4.23 -26.97 -0.11 0.17 16 17 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.12 -1.09 6.44 -26.45 -0.17 -1.26 16 19 C 0.06 0.54 7.30 -79.48 -0.58 -0.04 16 20 C 0.57 4.86 8.34 34.50 0.29 5.15 16 21 O -0.48 -5.06 17.74 -19.24 -0.34 -5.40 16 22 O -0.49 -3.03 13.43 -40.64 -0.55 -3.58 16 23 N -0.20 -2.41 12.51 35.27 0.44 -1.97 16 24 O -0.14 -1.93 11.82 -30.23 -0.36 -2.29 16 25 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 26 H 0.40 9.05 7.90 -40.82 -0.32 8.73 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.41 5.64 7.44 -40.82 -0.30 5.34 16 30 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.12 1.10 7.90 -51.93 -0.41 0.69 16 32 H 0.42 0.35 9.11 45.56 0.42 0.76 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -33.94 305.08 -3.88 -37.81 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -1.82 Total: 11.20 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -1.01 Total: 14.58 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.77 Total: -47.99 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.38 Total: -35.19 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.94 -3.88 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605585912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.877 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds