Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46493 * 109.47128 * 179.72554 * 12 10 9 14 14 C 1.34778 * 119.99700 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50709 * 120.00069 * 180.02562 * 14 13 12 17 17 H 1.09000 * 110.85376 * 304.30208 * 16 14 13 18 18 C 1.54733 * 110.97297 * 68.09946 * 16 14 13 19 19 C 1.51748 * 102.52109 * 142.31117 * 18 16 14 20 20 C 1.47479 * 125.85517 * 164.58646 * 19 18 16 21 21 O 1.21468 * 119.99573 * 0.05517 * 20 19 18 22 22 O 1.34753 * 120.00252 * 180.02562 * 20 19 18 23 23 N 1.29059 * 108.28207 * 344.65384 * 19 18 16 24 24 O 1.41389 * 112.88193 * 359.65216 * 23 19 18 25 25 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 28 28 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 29 29 H 0.97005 * 120.00530 * 0.02562 * 13 12 10 30 30 H 1.09005 * 110.79726 * 260.59825 * 18 16 14 31 31 H 1.09004 * 110.79333 * 24.06503 * 18 16 14 32 32 H 0.96696 * 116.99698 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9765 -0.0046 14 6 1.7461 -7.2471 -0.0048 15 8 0.5537 -7.4687 0.0002 16 6 2.7254 -8.3927 -0.0111 17 1 3.4101 -8.3132 -0.8555 18 6 3.5009 -8.4658 1.3259 19 6 3.6190 -9.9610 1.5563 20 6 4.5327 -10.6187 2.5090 21 8 5.2781 -9.9496 3.1961 22 8 4.5402 -11.9618 2.6178 23 7 2.7839 -10.5584 0.7745 24 8 2.0372 -9.6599 -0.0220 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 0.0016 27 1 0.6209 -4.9225 0.8949 28 1 0.6128 -4.9187 -0.8850 29 1 3.1492 -5.7993 -0.0081 30 1 4.4860 -8.0099 1.2273 31 1 2.9337 -7.9943 2.1285 32 1 5.1565 -12.3472 3.2555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605585912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = -158.057329 kcal Electronic energy + Delta-G solvation = -21346.242040 eV Core-core repulsion = 17501.484278 eV Total energy + Delta-G solvation = -3844.757763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22037 -41.22468 -40.50510 -39.64553 -37.37150 -36.29438 -35.46380 -34.52003 -33.39150 -32.54735 -29.33998 -26.80006 -26.48432 -25.30375 -21.86176 -21.60839 -21.37982 -20.11073 -19.41503 -19.16029 -18.64249 -17.57765 -17.14827 -17.01651 -16.92565 -16.91827 -16.43894 -16.09990 -15.76690 -15.32062 -15.13687 -14.51707 -14.47241 -14.14974 -13.91276 -13.66726 -13.53154 -13.19708 -12.88933 -12.78898 -12.46748 -12.45914 -12.21417 -12.13713 -11.55050 -11.54206 -10.85836 -10.55854 -10.34539 -10.08805 -8.50512 -6.00604 -0.56470 0.91254 1.27014 1.38962 1.43599 1.44121 1.50028 1.55635 1.91490 2.15711 2.32347 2.84474 3.04997 3.10751 3.17169 3.42206 3.56197 3.77116 4.15547 4.19681 4.36452 4.41593 4.42647 4.49251 5.09523 5.19674 5.39052 5.61343 5.91877 6.30828 6.48370 6.70704 6.93642 7.04164 7.44835 7.94287 8.66036 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032599 B = 0.002874 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.711927 B = 9739.646054 C =10379.784097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.089 0.911 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.120 3.880 13 N -0.692 5.692 14 C 0.523 3.477 15 O -0.560 6.560 16 C 0.031 3.969 17 H 0.159 0.841 18 C -0.120 4.120 19 C 0.071 3.929 20 C 0.577 3.423 21 O -0.500 6.500 22 O -0.490 6.490 23 N -0.223 5.223 24 O -0.175 6.175 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.420 0.580 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.087 -18.248 3.489 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.509 6.509 12 C -0.008 4.008 13 N -0.348 5.348 14 C 0.307 3.693 15 O -0.438 6.438 16 C -0.031 4.031 17 H 0.176 0.824 18 C -0.159 4.159 19 C -0.123 4.123 20 C 0.416 3.584 21 O -0.385 6.385 22 O -0.305 6.305 23 N 0.033 4.967 24 O -0.197 6.197 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.260 0.740 30 H 0.176 0.824 31 H 0.138 0.862 32 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 7.273 -18.889 3.020 20.465 hybrid contribution 0.580 1.553 0.504 1.732 sum 7.853 -17.337 3.524 19.356 Atomic orbital electron populations 1.69672 1.07029 1.29688 1.49290 1.26114 0.96494 1.02694 0.95818 0.84945 0.77721 0.76322 0.79140 1.19449 1.19865 1.19440 1.19706 0.93022 0.83490 1.50353 0.89356 1.41844 1.09638 1.04652 1.63364 1.20344 0.88128 0.85782 0.83648 1.90482 1.14956 1.87477 1.57992 1.20845 0.91581 0.83588 1.04742 1.45493 1.11935 1.03728 1.73597 1.20202 0.88952 0.83641 0.76489 1.90762 1.17871 1.84885 1.50319 1.23803 0.93375 0.84076 1.01829 0.82354 1.22936 1.05901 0.90708 0.96398 1.24978 0.96183 0.95907 0.95200 1.18842 0.79117 0.81393 0.79008 1.91017 1.38856 1.66185 1.42454 1.84599 1.63422 1.19626 1.62821 1.78650 1.01021 1.16312 1.00727 1.91441 1.44640 1.18844 1.64787 0.91101 0.76707 0.88348 0.88398 0.74037 0.82419 0.86211 0.68823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.69 13.05 21.66 0.28 -47.40 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 40.65 29.55 68.60 2.03 42.68 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.34 -17.84 9.68 84.04 0.81 -17.03 16 8 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -26.74 5.29 -306.98 -1.62 -28.36 16 10 C 0.43 18.52 7.85 87.66 0.69 19.20 16 11 O -0.62 -29.55 15.24 -3.08 -0.05 -29.60 16 12 C 0.12 3.93 6.15 85.64 0.53 4.45 16 13 N -0.69 -19.11 5.53 -466.78 -2.58 -21.69 16 14 C 0.52 14.31 7.14 87.66 0.63 14.94 16 15 O -0.56 -20.15 16.58 15.01 0.25 -19.90 16 16 C 0.03 0.61 4.23 30.44 0.13 0.74 16 17 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.12 -1.90 6.44 30.77 0.20 -1.70 16 19 C 0.07 1.25 7.30 45.74 0.33 1.58 16 20 C 0.58 8.64 8.34 70.26 0.59 9.23 16 21 O -0.50 -9.42 17.74 19.94 0.35 -9.06 16 22 O -0.49 -4.83 13.43 -56.63 -0.76 -5.59 16 23 N -0.22 -5.05 12.51 -42.31 -0.53 -5.58 16 24 O -0.18 -4.61 11.82 -20.27 -0.24 -4.85 16 25 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 26 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 27 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.42 10.72 7.44 -92.70 -0.69 10.03 16 30 H 0.16 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.12 1.97 7.90 -2.38 -0.02 1.95 16 32 H 0.45 -0.47 9.11 -74.06 -0.67 -1.14 16 Total: -1.00 -72.82 305.08 0.64 -72.18 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.86 Total: 25.84 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 4.37 Total: 31.35 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.45 Total: -103.03 kcal Atomic # 8 Polarization: -68.57 SS G_CDS: -0.44 Total: -69.01 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -72.82 0.64 -72.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605585912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.879 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds