Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47330 * 333.80583 * 3 2 1 5 5 C 1.37097 * 120.00446 * 264.23865 * 4 3 2 6 6 H 1.07999 * 119.99788 * 197.72192 * 5 4 3 7 7 C 1.38947 * 119.99669 * 17.71498 * 5 4 3 8 8 N 1.31415 * 120.00225 * 21.40687 * 7 5 4 9 9 Si 1.86807 * 119.99718 * 201.40064 * 7 5 4 10 10 H 1.48500 * 109.47106 * 90.00790 * 9 7 5 11 11 H 1.48503 * 109.46666 * 210.00480 * 9 7 5 12 12 H 1.48492 * 109.47347 * 330.00220 * 9 7 5 13 13 C 1.34777 * 119.99504 * 84.23022 * 4 3 2 14 14 O 1.21298 * 119.99987 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00442 * 0.02562 * 13 4 3 16 16 O 1.42894 * 109.47667 * 179.97438 * 15 13 4 17 17 C 1.35753 * 117.00409 * 179.97438 * 16 15 13 18 18 C 1.38969 * 119.90760 * 179.97438 * 17 16 15 19 19 C 1.37731 * 120.09548 * 180.02562 * 18 17 16 20 20 C 1.39750 * 119.90623 * 359.97438 * 19 18 17 21 21 C 1.43197 * 120.09760 * 179.97438 * 20 19 18 22 22 N 9.70937 * 92.77750 * 63.25571 * 2 1 3 23 23 C 1.39757 * 119.81062 * 0.25706 * 20 19 18 24 24 C 1.37732 * 119.90616 * 359.50782 * 23 20 19 25 25 H 1.09005 * 109.46631 * 213.81029 * 3 2 1 26 26 H 1.08995 * 109.47253 * 93.81136 * 3 2 1 27 27 H 0.97000 * 120.00141 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.47196 * 59.98942 * 15 13 4 29 29 H 1.09004 * 109.46795 * 299.99577 * 15 13 4 30 30 H 1.08005 * 119.95086 * 0.02562 * 18 17 16 31 31 H 1.08000 * 120.04191 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.05008 * 179.75011 * 23 20 19 33 33 H 1.07996 * 119.96142 * 180.22935 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2385 0.6097 5 6 3.4379 -1.2612 1.9374 6 1 4.0546 -2.0596 2.3229 7 6 2.9900 -0.2571 2.7869 8 7 1.9363 0.4576 2.4614 9 14 3.8858 0.0770 4.3918 10 1 4.9500 1.0873 4.1637 11 1 2.9226 0.5913 5.3984 12 1 4.4965 -1.1818 4.8892 13 6 3.2114 -2.3562 -0.1347 14 8 3.6167 -3.3821 0.3699 15 6 2.8371 -2.3312 -1.5943 16 8 3.0447 -3.6261 -2.1616 17 6 2.7529 -3.7759 -3.4789 18 6 2.9328 -5.0097 -4.0926 19 6 2.6385 -5.1659 -5.4290 20 6 2.1578 -4.0815 -6.1679 21 6 1.8510 -4.2391 -7.5577 22 7 1.6065 -4.3642 -8.6605 23 6 1.9829 -2.8412 -5.5480 24 6 2.2750 -2.6949 -4.2100 25 1 2.9709 0.8548 0.5719 26 1 2.9713 0.0691 -1.0253 27 1 1.6234 1.1583 3.0547 28 1 3.4575 -1.6024 -2.1161 29 1 1.7878 -2.0538 -1.6955 30 1 3.3040 -5.8473 -3.5207 31 1 2.7791 -6.1250 -5.9051 32 1 1.6154 -1.9995 -6.1164 33 1 2.1367 -1.7379 -3.7292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019424615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = 29.323155 kcal Electronic energy + Delta-G solvation = -20736.649297 eV Core-core repulsion = 17343.158976 eV Total energy + Delta-G solvation = -3393.490321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.43611 -39.01188 -37.76742 -36.23764 -35.84862 -34.48481 -32.11526 -31.47481 -30.67301 -28.48538 -27.51580 -24.80777 -23.46825 -22.89104 -19.71643 -19.07272 -18.30618 -18.04468 -16.78848 -16.46852 -15.91781 -15.81859 -14.94819 -14.66234 -14.42530 -14.16228 -14.01134 -13.76008 -13.59668 -13.44150 -13.18981 -12.83523 -12.48662 -12.37115 -12.19752 -12.03083 -11.78642 -11.46662 -11.28989 -11.07397 -10.98388 -10.71275 -10.49448 -10.46307 -9.42371 -9.35091 -8.79731 -8.37543 -8.22985 -6.65610 -4.15990 0.67249 1.08038 2.51931 2.78876 2.85593 3.00112 3.16336 3.21613 3.37112 3.62472 3.68896 3.77184 3.79125 4.01101 4.49445 4.54871 4.68546 4.74307 4.88706 4.96989 5.09325 5.21656 5.26192 5.32487 5.44587 5.70995 5.81387 5.86431 6.05698 6.10634 6.32373 6.37512 7.21287 7.33901 7.35148 7.70514 8.10700 8.55520 8.81773 8.99936 9.50244 10.40447 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.003476 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.817459 B = 8053.333579 C = 8681.214701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.239 3.761 3 C 0.217 3.783 4 N -0.436 5.436 5 C -0.315 4.315 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.875 5.875 9 Si 0.931 3.069 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.454 3.546 14 O -0.549 6.549 15 C 0.042 3.958 16 O -0.277 6.277 17 C 0.172 3.828 18 C -0.155 4.155 19 C -0.028 4.028 20 C -0.086 4.086 21 C 0.265 3.735 22 N -0.435 5.435 23 C -0.024 4.024 24 C -0.217 4.217 25 H 0.133 0.867 26 H 0.084 0.916 27 H 0.276 0.724 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 -1.195 -11.065 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.079 4.079 3 C 0.090 3.910 4 N -0.158 5.158 5 C -0.441 4.441 6 H 0.130 0.870 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.758 3.242 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.241 3.759 14 O -0.430 6.430 15 C -0.036 4.036 16 O -0.187 6.187 17 C 0.123 3.877 18 C -0.173 4.173 19 C -0.049 4.049 20 C -0.090 4.090 21 C -0.050 4.050 22 N -0.111 5.111 23 C -0.045 4.045 24 C -0.236 4.236 25 H 0.150 0.850 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.841 -1.901 -12.248 12.531 hybrid contribution 0.552 0.742 1.310 1.603 sum 2.393 -1.159 -10.938 11.256 Atomic orbital electron populations 1.80936 1.13484 1.08295 1.11676 1.29286 0.95343 0.92840 0.90464 1.18818 0.81717 0.92362 0.98148 1.43557 1.56620 1.05747 1.09832 1.19763 1.30121 1.11848 0.82392 0.87035 1.25317 0.94860 0.97004 0.99850 1.69846 1.19604 1.22570 1.39312 0.85828 0.78964 0.79110 0.80339 1.19986 1.21022 1.19193 1.19487 0.85472 0.84325 0.86596 1.90610 1.48945 1.30428 1.72998 1.22776 1.02030 0.83545 0.95295 1.86202 1.79858 1.32699 1.19908 1.19498 0.90668 0.93995 0.83535 1.20394 1.06197 0.96371 0.94378 1.20925 0.93733 0.97577 0.92634 1.15879 1.11118 0.95995 0.85966 1.25703 0.93112 0.93550 0.92609 1.81266 1.10064 1.07704 1.12024 1.20924 0.94224 0.95499 0.93807 1.21284 1.07491 0.99650 0.95127 0.84970 0.89844 0.91375 0.89563 0.89916 0.83806 0.84429 0.84777 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.14 18.54 42.15 0.78 -9.36 16 2 C 0.24 4.75 12.95 -20.76 -0.27 4.48 16 3 C 0.22 3.76 4.91 -6.83 -0.03 3.73 16 4 N -0.44 -9.27 2.60 -117.93 -0.31 -9.58 16 5 C -0.31 -7.55 9.32 -14.93 -0.14 -7.69 16 6 H 0.11 2.85 7.39 -52.49 -0.39 2.47 16 7 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 8 N -0.87 -20.60 9.48 55.50 0.53 -20.07 16 9 Si 0.93 18.48 29.60 -169.99 -5.03 13.44 16 10 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.45 9.53 7.64 -10.99 -0.08 9.45 16 14 O -0.55 -13.88 16.15 -14.37 -0.23 -14.12 16 15 C 0.04 0.64 3.82 36.00 0.14 0.78 16 16 O -0.28 -4.39 9.66 -38.88 -0.38 -4.77 16 17 C 0.17 2.11 6.69 -39.04 -0.26 1.84 16 18 C -0.15 -1.60 9.97 -39.50 -0.39 -2.00 16 19 C -0.03 -0.25 9.75 -39.20 -0.38 -0.63 16 20 C -0.09 -0.81 5.74 -106.84 -0.61 -1.42 16 21 C 0.26 2.87 15.33 -22.46 -0.34 2.53 16 22 N -0.43 -5.68 18.54 41.86 0.78 -4.90 16 23 C -0.02 -0.21 9.75 -39.20 -0.38 -0.60 16 24 C -0.22 -2.19 9.02 -39.50 -0.36 -2.55 16 25 H 0.13 2.37 6.46 -51.93 -0.34 2.03 16 26 H 0.08 1.00 6.68 -51.93 -0.35 0.65 16 27 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 28 H 0.09 0.99 6.93 -51.93 -0.36 0.63 16 29 H 0.08 1.19 7.02 -51.93 -0.36 0.82 16 30 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 1.22 6.27 -52.49 -0.33 0.89 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -30.99 308.87 -4.94 -35.93 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.53 Total: 0.13 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -3.21 Total: 8.63 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 1.78 Total: -43.91 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.61 Total: -18.88 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.99 -4.94 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019424615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.249 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds