Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47330 * 333.80583 * 3 2 1 5 5 C 1.37097 * 120.00446 * 264.23865 * 4 3 2 6 6 H 1.07999 * 119.99788 * 197.72192 * 5 4 3 7 7 C 1.38947 * 119.99669 * 17.71498 * 5 4 3 8 8 N 1.31415 * 120.00225 * 21.40687 * 7 5 4 9 9 Si 1.86807 * 119.99718 * 201.40064 * 7 5 4 10 10 H 1.48500 * 109.47106 * 90.00790 * 9 7 5 11 11 H 1.48503 * 109.46666 * 210.00480 * 9 7 5 12 12 H 1.48492 * 109.47347 * 330.00220 * 9 7 5 13 13 C 1.34777 * 119.99504 * 84.23022 * 4 3 2 14 14 O 1.21298 * 119.99987 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00442 * 0.02562 * 13 4 3 16 16 O 1.42894 * 109.47667 * 179.97438 * 15 13 4 17 17 C 1.35753 * 117.00409 * 179.97438 * 16 15 13 18 18 C 1.38969 * 119.90760 * 179.97438 * 17 16 15 19 19 C 1.37731 * 120.09548 * 180.02562 * 18 17 16 20 20 C 1.39750 * 119.90623 * 359.97438 * 19 18 17 21 21 C 1.43197 * 120.09760 * 179.97438 * 20 19 18 22 22 N 9.70937 * 92.77750 * 63.25571 * 2 1 3 23 23 C 1.39757 * 119.81062 * 0.25706 * 20 19 18 24 24 C 1.37732 * 119.90616 * 359.50782 * 23 20 19 25 25 H 1.09005 * 109.46631 * 213.81029 * 3 2 1 26 26 H 1.08995 * 109.47253 * 93.81136 * 3 2 1 27 27 H 0.97000 * 120.00141 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.47196 * 59.98942 * 15 13 4 29 29 H 1.09004 * 109.46795 * 299.99577 * 15 13 4 30 30 H 1.08005 * 119.95086 * 0.02562 * 18 17 16 31 31 H 1.08000 * 120.04191 * 179.97438 * 19 18 17 32 32 H 1.08007 * 120.05008 * 179.75011 * 23 20 19 33 33 H 1.07996 * 119.96142 * 180.22935 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2385 0.6097 5 6 3.4379 -1.2612 1.9374 6 1 4.0546 -2.0596 2.3229 7 6 2.9900 -0.2571 2.7869 8 7 1.9363 0.4576 2.4614 9 14 3.8858 0.0770 4.3918 10 1 4.9500 1.0873 4.1637 11 1 2.9226 0.5913 5.3984 12 1 4.4965 -1.1818 4.8892 13 6 3.2114 -2.3562 -0.1347 14 8 3.6167 -3.3821 0.3699 15 6 2.8371 -2.3312 -1.5943 16 8 3.0447 -3.6261 -2.1616 17 6 2.7529 -3.7759 -3.4789 18 6 2.9328 -5.0097 -4.0926 19 6 2.6385 -5.1659 -5.4290 20 6 2.1578 -4.0815 -6.1679 21 6 1.8510 -4.2391 -7.5577 22 7 1.6065 -4.3642 -8.6605 23 6 1.9829 -2.8412 -5.5480 24 6 2.2750 -2.6949 -4.2100 25 1 2.9709 0.8548 0.5719 26 1 2.9713 0.0691 -1.0253 27 1 1.6234 1.1583 3.0547 28 1 3.4575 -1.6024 -2.1161 29 1 1.7878 -2.0538 -1.6955 30 1 3.3040 -5.8473 -3.5207 31 1 2.7791 -6.1250 -5.9051 32 1 1.6154 -1.9995 -6.1164 33 1 2.1367 -1.7379 -3.7292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019424615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = 11.524941 kcal Electronic energy + Delta-G solvation = -20737.421086 eV Core-core repulsion = 17343.158976 eV Total energy + Delta-G solvation = -3394.262110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.44822 -40.40075 -38.80806 -37.57863 -37.07582 -36.15980 -33.83762 -32.25705 -31.54996 -29.81352 -28.97279 -26.39258 -24.31814 -23.77275 -21.17534 -19.87764 -19.81842 -19.24197 -18.25814 -17.82214 -17.11891 -17.02003 -16.32687 -15.89066 -15.54689 -15.24110 -15.03012 -14.86040 -14.77018 -14.65325 -14.46534 -13.96236 -13.84140 -13.51489 -13.40273 -13.25093 -13.11154 -13.01985 -12.88463 -12.32595 -12.22498 -12.10512 -11.90648 -11.85130 -11.13370 -10.47062 -10.06410 -9.96231 -9.24769 -8.42338 -5.98414 -0.13253 0.36518 1.39344 1.49693 1.58306 1.66674 1.70834 1.87468 1.95465 2.16005 2.25354 2.40068 2.90974 2.93963 2.98608 3.17343 3.55752 3.70732 3.86880 3.96834 4.04432 4.19646 4.21777 4.48793 4.58189 4.62389 4.92102 5.02496 5.05859 5.28829 5.36406 5.49121 5.61451 5.96411 6.28616 6.42761 6.51401 7.01015 7.09315 7.29239 7.84248 8.61100 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.003476 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.817459 B = 8053.333579 C = 8681.214701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.254 3.746 3 C 0.215 3.785 4 N -0.446 5.446 5 C -0.341 4.341 6 H 0.083 0.917 7 C 0.011 3.989 8 N -0.888 5.888 9 Si 0.986 3.014 10 H -0.257 1.257 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.446 3.554 14 O -0.605 6.605 15 C 0.054 3.946 16 O -0.309 6.309 17 C 0.147 3.853 18 C -0.163 4.163 19 C -0.017 4.017 20 C -0.086 4.086 21 C 0.288 3.712 22 N -0.474 5.474 23 C -0.016 4.016 24 C -0.215 4.215 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.276 0.724 28 H 0.133 0.867 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -0.045 -12.591 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.064 4.064 3 C 0.089 3.911 4 N -0.167 5.167 5 C -0.468 4.468 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.527 5.527 9 Si 0.811 3.189 10 H -0.182 1.182 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.235 3.765 14 O -0.489 6.489 15 C -0.024 4.024 16 O -0.221 6.221 17 C 0.100 3.900 18 C -0.181 4.181 19 C -0.037 4.037 20 C -0.090 4.090 21 C -0.026 4.026 22 N -0.151 5.151 23 C -0.037 4.037 24 C -0.233 4.233 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.086 0.914 28 H 0.151 0.849 29 H 0.113 0.887 30 H 0.163 0.837 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.120 -0.720 -13.807 13.987 hybrid contribution 0.456 0.311 1.747 1.832 sum 2.576 -0.409 -12.060 12.339 Atomic orbital electron populations 1.80945 1.14767 1.09537 1.13135 1.29757 0.95793 0.91636 0.89216 1.19239 0.80099 0.90375 1.01365 1.43704 1.56445 1.07354 1.09221 1.19607 1.30955 1.11854 0.84380 0.89937 1.25849 0.95038 0.96366 1.01980 1.69920 1.19970 1.22677 1.40088 0.85021 0.78157 0.78581 0.77132 1.18188 1.21376 1.20434 1.20488 0.83737 0.83286 0.89006 1.90570 1.51107 1.32446 1.74820 1.22632 1.03391 0.84864 0.91536 1.86145 1.81010 1.32925 1.22023 1.19776 0.92390 0.95450 0.82387 1.20534 1.06446 0.96132 0.95011 1.21117 0.92356 0.98453 0.91809 1.15977 1.11213 0.96623 0.85218 1.25777 0.91958 0.92343 0.92498 1.81302 1.11529 1.09022 1.13247 1.21169 0.93098 0.95948 0.93456 1.21452 1.06821 0.99684 0.95366 0.85341 0.83426 0.91375 0.84941 0.88698 0.83684 0.82115 0.82368 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -21.43 18.54 20.01 0.37 -21.06 16 2 C 0.25 9.64 12.95 89.44 1.16 10.80 16 3 C 0.22 6.96 4.91 84.57 0.42 7.38 16 4 N -0.45 -18.73 2.60 -645.41 -1.68 -20.41 16 5 C -0.34 -16.60 9.32 84.04 0.78 -15.82 16 6 H 0.08 4.42 7.39 -2.91 -0.02 4.40 16 7 C 0.01 0.49 4.87 84.93 0.41 0.90 16 8 N -0.89 -41.28 9.48 21.66 0.21 -41.08 16 9 Si 0.99 37.81 29.60 68.60 2.03 39.84 16 10 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 11 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 13 C 0.45 18.57 7.64 87.66 0.67 19.24 16 14 O -0.61 -31.53 16.15 15.95 0.26 -31.27 16 15 C 0.05 1.52 3.82 71.24 0.27 1.79 16 16 O -0.31 -9.48 9.66 -71.75 -0.69 -10.17 16 17 C 0.15 3.32 6.69 22.62 0.15 3.47 16 18 C -0.16 -3.11 9.97 22.32 0.22 -2.89 16 19 C -0.02 -0.26 9.75 22.52 0.22 -0.04 16 20 C -0.09 -1.38 5.74 -21.30 -0.12 -1.50 16 21 C 0.29 5.58 15.33 88.33 1.35 6.93 16 22 N -0.47 -11.63 18.54 19.01 0.35 -11.27 16 23 C -0.02 -0.23 9.75 22.52 0.22 -0.01 16 24 C -0.21 -3.63 9.02 22.32 0.20 -3.43 16 25 H 0.13 4.34 6.46 -2.38 -0.02 4.32 16 26 H 0.15 2.83 6.68 -2.39 -0.02 2.81 16 27 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16 28 H 0.13 2.45 6.93 -2.39 -0.02 2.43 16 29 H 0.10 2.46 7.02 -2.38 -0.02 2.44 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.16 2.05 6.27 -2.91 -0.02 2.03 16 Total: -1.00 -70.05 308.87 7.98 -62.07 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.18 Total: 6.52 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 5.96 Total: 26.84 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -0.75 Total: -93.82 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.44 Total: -41.44 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -70.05 7.98 -62.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019424615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.591 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds