Wall clock time and date at job start Wed Apr 15 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00272 * 2 1 4 4 C 1.38754 * 120.05849 * 359.72414 * 3 2 1 5 5 C 1.38118 * 119.94669 * 179.69851 * 4 3 2 6 6 C 1.38287 * 120.05366 * 0.60057 * 5 4 3 7 7 C 1.38238 * 120.11280 * 359.67531 * 6 5 4 8 8 C 1.50702 * 119.97272 * 179.97438 * 7 6 5 9 9 S 1.81394 * 109.47481 * 270.02687 * 8 7 6 10 10 O 1.42102 * 110.54173 * 291.62365 * 9 8 7 11 11 O 1.42107 * 110.54695 * 68.37176 * 9 8 7 12 12 N 1.65599 * 104.45125 * 179.97438 * 9 8 7 13 13 C 1.46505 * 119.99786 * 269.99459 * 12 9 8 14 14 C 1.36934 * 120.00169 * 90.00142 * 12 9 8 15 15 H 1.08000 * 120.00017 * 20.62879 * 14 12 9 16 16 C 1.38816 * 120.00108 * 200.63801 * 14 12 9 17 17 N 1.31617 * 119.99773 * 14.69838 * 16 14 12 18 18 Si 1.86795 * 120.00006 * 194.70018 * 16 14 12 19 19 H 1.48501 * 109.46958 * 85.00685 * 18 16 14 20 20 H 1.48500 * 109.47177 * 205.00334 * 18 16 14 21 21 H 1.48500 * 109.47517 * 325.01001 * 18 16 14 22 22 C 1.38162 * 120.05598 * 0.02562 * 7 6 5 23 23 H 1.09004 * 109.47222 * 59.99553 * 1 2 3 24 24 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46996 * 300.00375 * 1 2 3 26 26 H 1.08007 * 120.02533 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.97163 * 180.29682 * 5 4 3 28 28 H 1.08006 * 119.94326 * 179.69919 * 6 5 4 29 29 H 1.09003 * 109.47105 * 30.02680 * 8 7 6 30 30 H 1.08999 * 109.47352 * 150.02258 * 8 7 6 31 31 H 1.09003 * 109.46419 * 94.95346 * 13 12 9 32 32 H 1.09000 * 109.46792 * 214.94928 * 13 12 9 33 33 H 1.08993 * 109.47172 * 334.95229 * 13 12 9 34 34 H 0.97002 * 119.99669 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.03012 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9210 3.6047 0.0005 6 6 3.3020 3.6757 0.0001 7 6 4.0560 2.5170 0.0000 8 6 5.5609 2.5980 -0.0011 9 16 6.1635 2.6306 -1.7117 10 8 5.9339 1.3794 -2.3451 11 8 5.8008 3.8498 -2.3451 12 7 7.8108 2.7199 -1.5679 13 6 8.4707 4.0264 -1.5045 14 6 8.5562 1.5728 -1.5083 15 1 8.1483 0.6440 -1.8789 16 6 9.8359 1.6036 -0.9715 17 7 10.2280 2.6421 -0.2642 18 14 11.0016 0.1714 -1.2529 19 1 11.6969 0.3473 -2.5533 20 1 12.0038 0.1263 -0.1580 21 1 10.2310 -1.0978 -1.2714 22 6 3.4311 1.2848 0.0000 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2129 2.3204 -0.0107 27 1 1.3341 4.5114 0.0009 28 1 3.7924 4.6380 0.0001 29 1 5.8762 3.5063 0.5126 30 1 5.9719 1.7289 0.5125 31 1 8.6244 4.3055 -0.4621 32 1 9.4339 3.9719 -2.0118 33 1 7.8449 4.7736 -1.9923 34 1 11.1224 2.6638 0.1107 35 1 4.0206 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034610924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:09 Heat of formation + Delta-G solvation = -74.749598 kcal Electronic energy + Delta-G solvation = -20559.787876 eV Core-core repulsion = 17264.935822 eV Total energy + Delta-G solvation = -3294.852054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -39.95660 -37.45615 -35.75469 -35.64764 -34.44369 -32.24916 -31.57234 -30.30819 -27.41715 -26.50826 -26.43576 -23.56489 -22.35146 -21.05049 -18.47936 -17.63240 -17.04116 -16.56180 -16.13157 -15.78052 -15.69481 -15.11383 -14.78596 -14.51222 -13.96085 -13.67922 -13.27388 -13.08256 -12.77614 -12.49649 -11.98601 -11.88648 -11.69145 -11.49196 -11.32646 -11.11036 -11.08153 -11.02255 -10.71539 -10.66390 -10.63096 -10.18654 -10.15940 -9.93487 -9.37423 -8.51780 -8.14151 -7.94487 -6.66288 -4.05710 1.25859 1.64038 1.83534 3.08748 3.12870 3.16867 3.32658 3.87302 3.97612 4.25855 4.68061 4.87405 4.93941 5.07680 5.10042 5.16889 5.27460 5.38281 5.42837 5.59078 5.66857 5.79962 6.04830 6.23002 6.36461 6.42404 6.47048 6.61454 6.82711 6.86372 6.96088 7.03310 7.17163 7.35628 7.52697 8.20542 8.55235 9.03573 10.29050 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004832 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.080191 B = 5793.106685 C = 6390.040221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.222 4.222 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.019 4.019 8 C -0.624 4.624 9 S 2.465 3.535 10 O -0.979 6.979 11 O -0.997 6.997 12 N -0.802 5.802 13 C 0.116 3.884 14 C -0.235 4.235 15 H 0.119 0.881 16 C 0.028 3.972 17 N -0.831 5.831 18 Si 0.931 3.069 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.262 1.262 22 C -0.151 4.151 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.277 0.723 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 -0.280 3.567 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.241 4.241 5 C -0.097 4.097 6 C -0.175 4.175 7 C -0.020 4.020 8 C -0.739 4.739 9 S 2.562 3.438 10 O -0.969 6.969 11 O -0.987 6.987 12 N -0.625 5.625 13 C -0.030 4.030 14 C -0.384 4.384 15 H 0.137 0.863 16 C -0.185 4.185 17 N -0.471 5.471 18 Si 0.756 3.244 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.854 -0.287 2.919 11.243 hybrid contribution 0.372 -0.409 0.926 1.078 sum -10.482 -0.696 3.845 11.186 Atomic orbital electron populations 1.23013 0.78865 1.03626 1.01173 1.86078 1.20997 1.27094 1.88909 1.18934 0.92114 0.84033 0.96709 1.21135 0.99631 0.92454 1.10869 1.20860 0.94355 0.96883 0.97616 1.21071 0.93841 0.98312 1.04292 1.19136 0.93870 0.92513 0.96526 1.30358 0.98218 1.09646 1.35674 1.14760 0.74861 0.73498 0.80713 1.93347 1.85029 1.44095 1.74406 1.93324 1.83548 1.46532 1.75255 1.54250 1.20690 1.10349 1.77217 1.21368 0.97406 0.82600 1.01623 1.20171 0.95442 0.90671 1.32109 0.86304 1.25803 0.99590 0.98560 0.94526 1.70113 1.19967 1.29105 1.27866 0.85833 0.79381 0.80676 0.78462 1.19608 1.20505 1.18632 1.20409 0.91454 0.98556 1.06564 0.92755 0.88450 0.92875 0.85709 0.85738 0.85412 0.86331 0.85810 0.92765 0.90931 0.93304 0.91269 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.83 10.50 -19.42 -0.20 -5.03 16 3 C 0.13 2.14 6.69 -39.22 -0.26 1.87 16 4 C -0.22 -3.24 9.04 -39.43 -0.36 -3.59 16 5 C -0.08 -1.18 10.04 -39.61 -0.40 -1.57 16 6 C -0.16 -2.73 9.70 -39.56 -0.38 -3.11 16 7 C -0.02 -0.36 5.14 -104.65 -0.54 -0.90 16 8 C -0.62 -12.59 6.30 36.01 0.23 -12.36 16 9 S 2.46 58.58 5.37 -107.50 -0.58 58.00 16 10 O -0.98 -25.88 16.76 -57.54 -0.96 -26.84 16 11 O -1.00 -25.21 16.53 -57.54 -0.95 -26.16 16 12 N -0.80 -19.42 3.24 -66.68 -0.22 -19.63 16 13 C 0.12 2.60 8.91 59.85 0.53 3.14 16 14 C -0.23 -5.82 9.41 -15.06 -0.14 -5.96 16 15 H 0.12 2.96 7.08 -52.49 -0.37 2.58 16 16 C 0.03 0.66 5.07 -17.43 -0.09 0.57 16 17 N -0.83 -19.66 10.67 55.49 0.59 -19.07 16 18 Si 0.93 18.30 29.58 -169.99 -5.03 13.27 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 C -0.15 -2.86 9.64 -39.43 -0.38 -3.24 16 23 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 26 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 27 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.12 2.20 8.09 -51.92 -0.42 1.78 16 30 H 0.12 2.42 8.08 -51.92 -0.42 2.00 16 31 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 32 H 0.07 1.64 7.21 -51.93 -0.37 1.26 16 33 H 0.05 1.03 6.81 -51.93 -0.35 0.68 16 34 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 35 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -30.39 310.65 -7.74 -38.13 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.28 Total: 6.55 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.80 Total: -23.89 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.38 Total: -38.70 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -2.12 Total: -58.04 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: 58.58 SS G_CDS: -0.58 Total: 58.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.39 -7.74 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034610924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.623 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds