Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35899 * 117.00272 * 2 1 4 4 C 1.38754 * 120.05849 * 359.72414 * 3 2 1 5 5 C 1.38118 * 119.94669 * 179.69851 * 4 3 2 6 6 C 1.38287 * 120.05366 * 0.60057 * 5 4 3 7 7 C 1.38238 * 120.11280 * 359.67531 * 6 5 4 8 8 C 1.50702 * 119.97272 * 179.97438 * 7 6 5 9 9 S 1.81394 * 109.47481 * 270.02687 * 8 7 6 10 10 O 1.42102 * 110.54173 * 291.62365 * 9 8 7 11 11 O 1.42107 * 110.54695 * 68.37176 * 9 8 7 12 12 N 1.65599 * 104.45125 * 179.97438 * 9 8 7 13 13 C 1.46505 * 119.99786 * 269.99459 * 12 9 8 14 14 C 1.36934 * 120.00169 * 90.00142 * 12 9 8 15 15 H 1.08000 * 120.00017 * 20.62879 * 14 12 9 16 16 C 1.38816 * 120.00108 * 200.63801 * 14 12 9 17 17 N 1.31617 * 119.99773 * 14.69838 * 16 14 12 18 18 Si 1.86795 * 120.00006 * 194.70018 * 16 14 12 19 19 H 1.48501 * 109.46958 * 85.00685 * 18 16 14 20 20 H 1.48500 * 109.47177 * 205.00334 * 18 16 14 21 21 H 1.48500 * 109.47517 * 325.01001 * 18 16 14 22 22 C 1.38162 * 120.05598 * 0.02562 * 7 6 5 23 23 H 1.09004 * 109.47222 * 59.99553 * 1 2 3 24 24 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46996 * 300.00375 * 1 2 3 26 26 H 1.08007 * 120.02533 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.97163 * 180.29682 * 5 4 3 28 28 H 1.08006 * 119.94326 * 179.69919 * 6 5 4 29 29 H 1.09003 * 109.47105 * 30.02680 * 8 7 6 30 30 H 1.08999 * 109.47352 * 150.02258 * 8 7 6 31 31 H 1.09003 * 109.46419 * 94.95346 * 13 12 9 32 32 H 1.09000 * 109.46792 * 214.94928 * 13 12 9 33 33 H 1.08993 * 109.47172 * 334.95229 * 13 12 9 34 34 H 0.97002 * 119.99669 * 180.02562 * 17 16 14 35 35 H 1.08002 * 120.03012 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9210 3.6047 0.0005 6 6 3.3020 3.6757 0.0001 7 6 4.0560 2.5170 0.0000 8 6 5.5609 2.5980 -0.0011 9 16 6.1635 2.6306 -1.7117 10 8 5.9339 1.3794 -2.3451 11 8 5.8008 3.8498 -2.3451 12 7 7.8108 2.7199 -1.5679 13 6 8.4707 4.0264 -1.5045 14 6 8.5562 1.5728 -1.5083 15 1 8.1483 0.6440 -1.8789 16 6 9.8359 1.6036 -0.9715 17 7 10.2280 2.6421 -0.2642 18 14 11.0016 0.1714 -1.2529 19 1 11.6969 0.3473 -2.5533 20 1 12.0038 0.1263 -0.1580 21 1 10.2310 -1.0978 -1.2714 22 6 3.4311 1.2848 0.0000 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2129 2.3204 -0.0107 27 1 1.3341 4.5114 0.0009 28 1 3.7924 4.6380 0.0001 29 1 5.8762 3.5063 0.5126 30 1 5.9719 1.7289 0.5125 31 1 8.6244 4.3055 -0.4621 32 1 9.4339 3.9719 -2.0118 33 1 7.8449 4.7736 -1.9923 34 1 11.1224 2.6638 0.1107 35 1 4.0206 0.3798 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034610924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -95.197442 kcal Electronic energy + Delta-G solvation = -20560.674561 eV Core-core repulsion = 17264.935822 eV Total energy + Delta-G solvation = -3295.738739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.14742 -38.66102 -37.68732 -37.55480 -36.48750 -33.62589 -33.37307 -31.52388 -28.52232 -28.31791 -27.70739 -25.39709 -23.61332 -22.33755 -20.29197 -18.99880 -18.83410 -18.43042 -17.33767 -17.04438 -16.98288 -16.64963 -16.56857 -16.23753 -15.29339 -15.13486 -14.77725 -14.58836 -14.30554 -13.72827 -13.67762 -13.36186 -13.20690 -13.03671 -12.90534 -12.75567 -12.66562 -12.61918 -12.36307 -12.25002 -12.09991 -11.91322 -11.85418 -11.55992 -11.13234 -10.09608 -9.73221 -9.24741 -8.41214 -5.93456 -0.43322 0.33301 0.38843 1.50031 1.53627 1.61762 2.14920 2.29659 2.48851 2.67879 2.88808 3.28764 3.53548 3.65989 3.81236 4.07138 4.17746 4.28435 4.33017 4.39428 4.47276 4.54851 4.63747 4.70308 4.76258 4.99126 5.02699 5.20631 5.21820 5.35661 5.35950 5.51183 5.56931 5.71064 6.38724 6.39995 6.74871 7.21812 8.56021 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025704 B = 0.004832 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.080191 B = 5793.106685 C = 6390.040221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.121 3.879 4 C -0.209 4.209 5 C -0.071 4.071 6 C -0.173 4.173 7 C -0.050 4.050 8 C -0.606 4.606 9 S 2.491 3.509 10 O -1.010 7.010 11 O -1.013 7.013 12 N -0.823 5.823 13 C 0.124 3.876 14 C -0.279 4.279 15 H 0.105 0.895 16 C 0.000 4.000 17 N -0.855 5.855 18 Si 0.989 3.011 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.264 1.264 22 C -0.181 4.181 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.282 0.718 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 0.129 4.282 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.253 6.253 3 C 0.076 3.924 4 C -0.228 4.228 5 C -0.089 4.089 6 C -0.192 4.192 7 C -0.052 4.052 8 C -0.727 4.727 9 S 2.592 3.408 10 O -1.000 7.000 11 O -1.002 7.002 12 N -0.648 5.648 13 C -0.022 4.022 14 C -0.425 4.425 15 H 0.123 0.877 16 C -0.210 4.210 17 N -0.494 5.494 18 Si 0.811 3.189 19 H -0.193 1.193 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.201 4.201 23 H 0.085 0.915 24 H 0.138 0.862 25 H 0.090 0.910 26 H 0.184 0.816 27 H 0.184 0.816 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.109 0.112 3.596 13.594 hybrid contribution 0.725 -0.512 0.765 1.172 sum -12.384 -0.400 4.361 13.135 Atomic orbital electron populations 1.23425 0.75964 1.05809 1.02656 1.86060 1.24001 1.26591 1.88611 1.19055 0.91597 0.85575 0.96201 1.21619 1.01612 0.91320 1.08223 1.21357 0.93478 0.98724 0.95338 1.21351 0.95367 0.97850 1.04600 1.19148 0.92993 0.93744 0.99296 1.30015 0.99917 1.10751 1.31989 1.12852 0.74549 0.72432 0.80999 1.93315 1.85576 1.45365 1.75754 1.93304 1.83903 1.46845 1.76194 1.53958 1.20593 1.10779 1.79428 1.21307 0.97132 0.82171 1.01612 1.20127 0.96915 0.90396 1.35032 0.87705 1.26424 1.00040 1.00729 0.93814 1.70149 1.20550 1.30283 1.28440 0.84991 0.77522 0.77816 0.78538 1.19333 1.19449 1.18797 1.20480 0.93112 0.98007 1.08463 0.91468 0.86227 0.90971 0.81617 0.81570 0.84539 0.84611 0.85693 0.92712 0.91697 0.92528 0.90777 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -9.69 10.50 -92.41 -0.97 -10.66 16 3 C 0.12 3.87 6.69 22.51 0.15 4.02 16 4 C -0.21 -5.29 9.04 22.36 0.20 -5.08 16 5 C -0.07 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.17 -5.69 9.70 22.28 0.22 -5.47 16 7 C -0.05 -1.93 5.14 -19.88 -0.10 -2.03 16 8 C -0.61 -24.64 6.30 71.24 0.45 -24.19 16 9 S 2.49 120.63 5.37 -56.49 -0.30 120.33 16 10 O -1.01 -55.10 16.76 -127.65 -2.14 -57.24 16 11 O -1.01 -51.36 16.53 -127.65 -2.11 -53.47 16 12 N -0.82 -41.00 3.24 -364.89 -1.18 -42.18 16 13 C 0.12 5.66 8.91 127.77 1.14 6.80 16 14 C -0.28 -14.32 9.41 84.04 0.79 -13.53 16 15 H 0.11 5.50 7.08 -2.91 -0.02 5.48 16 16 C 0.00 0.00 5.07 84.86 0.43 0.43 16 17 N -0.86 -41.06 10.67 21.65 0.23 -40.83 16 18 Si 0.99 37.97 29.58 68.60 2.03 39.99 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.18 -6.91 9.64 22.37 0.22 -6.69 16 23 H 0.07 0.93 7.65 -2.38 -0.02 0.91 16 24 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 0.91 7.67 -2.39 -0.02 0.89 16 26 H 0.17 2.77 6.30 -2.91 -0.02 2.75 16 27 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 28 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.14 4.99 8.09 -2.39 -0.02 4.97 16 30 H 0.12 5.03 8.08 -2.39 -0.02 5.01 16 31 H 0.05 2.45 7.40 -2.39 -0.02 2.43 16 32 H 0.06 3.01 7.21 -2.39 -0.02 3.00 16 33 H 0.06 2.43 6.81 -2.39 -0.02 2.41 16 34 H 0.28 12.52 8.31 -92.71 -0.77 11.75 16 35 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -66.74 310.65 1.48 -65.27 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 1.10 Total: 24.79 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 4.83 Total: -46.00 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -0.95 Total: -83.01 kcal Atomic # 8 Polarization: -116.15 SS G_CDS: -5.22 Total: -121.37 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 39.99 kcal Atomic # 16 Polarization: 120.63 SS G_CDS: -0.30 Total: 120.33 kcal Total: -66.74 1.48 -65.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034610924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.930 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds