Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48498 * 109.47104 * 264.98387 * 3 2 1 5 5 H 1.48500 * 109.47078 * 24.98206 * 3 2 1 6 6 H 1.48495 * 109.47504 * 144.98233 * 3 2 1 7 7 C 1.38955 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 201.39182 * 7 2 1 9 9 N 1.37095 * 119.99582 * 21.39638 * 7 2 1 10 10 C 1.46496 * 120.00515 * 11.50686 * 9 7 2 11 11 C 1.50701 * 109.47219 * 264.66999 * 10 9 7 12 12 O 1.20824 * 119.99670 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99502 * 191.50284 * 9 7 2 15 15 O 1.21295 * 120.00354 * 0.02562 * 14 9 7 16 16 C 1.50704 * 119.99809 * 179.97438 * 14 9 7 17 17 C 1.53001 * 109.46984 * 180.02562 * 16 14 9 18 18 H 1.09001 * 110.65672 * 57.91368 * 17 16 14 19 19 N 1.47319 * 110.59938 * 295.00163 * 17 16 14 20 20 C 1.34526 * 106.61887 * 241.25188 * 19 17 16 21 21 O 1.21534 * 123.77245 * 180.22856 * 20 19 17 22 22 N 1.33794 * 112.45845 * 0.21927 * 20 19 17 23 23 C 1.34770 * 111.64267 * 0.02562 * 22 20 19 24 24 O 1.21240 * 127.15335 * 180.02562 * 23 22 20 25 25 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47010 * 24.66469 * 10 9 7 27 27 H 1.08999 * 109.47270 * 144.66177 * 10 9 7 28 28 H 0.96709 * 116.99318 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47025 * 60.00780 * 16 14 9 30 30 H 1.09003 * 109.47381 * 300.00511 * 16 14 9 31 31 H 0.96992 * 126.68710 * 61.50578 * 19 17 16 32 32 H 0.96998 * 124.17616 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6017 1.9852 -1.3947 5 1 1.3967 2.6810 0.5913 6 1 3.4887 1.4731 0.8034 7 6 2.0089 -1.2034 0.0005 8 1 3.0331 -1.2355 0.3417 9 7 1.3942 -2.3499 -0.4321 10 6 0.1062 -2.2735 -1.1260 11 6 -1.0107 -2.4851 -0.1366 12 8 -0.7568 -2.6801 1.0284 13 8 -2.2875 -2.4578 -0.5500 14 6 1.9749 -3.5473 -0.2191 15 8 3.0411 -3.6107 0.3557 16 6 1.2990 -4.8077 -0.6942 17 6 2.1611 -6.0176 -0.3286 18 1 2.3319 -6.0572 0.7472 19 7 3.4419 -5.9800 -1.0556 20 6 3.4832 -7.0865 -1.8197 21 8 4.4131 -7.3693 -2.5494 22 7 2.3864 -7.8410 -1.6863 23 6 1.5125 -7.2981 -0.8158 24 8 0.4342 -7.7441 -0.4865 25 1 -0.4849 0.8401 -0.0004 26 1 0.0005 -1.2923 -1.5889 27 1 0.0615 -3.0447 -1.8950 28 1 -2.9692 -2.5991 0.1212 29 1 1.1710 -4.7658 -1.7758 30 1 0.3236 -4.8993 -0.2162 31 1 4.1241 -5.2935 -0.9925 32 1 2.2385 -8.6755 -2.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = -155.654933 kcal Electronic energy + Delta-G solvation = -23174.088796 eV Core-core repulsion = 19329.435209 eV Total energy + Delta-G solvation = -3844.653587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29569 -39.62213 -38.59035 -38.35944 -36.18642 -35.42042 -34.74085 -33.80376 -32.04563 -30.49495 -27.88199 -26.11253 -24.28986 -22.64539 -21.52408 -21.20308 -19.26885 -18.26543 -17.34808 -17.16001 -16.86425 -16.55010 -16.40328 -15.86334 -15.67092 -15.26035 -14.85002 -14.58593 -14.26781 -14.26199 -14.05373 -13.41371 -12.96977 -12.52613 -12.11228 -11.85816 -11.77660 -11.45399 -11.05136 -10.99779 -10.56907 -10.50843 -10.43969 -10.41684 -10.25607 -9.84177 -9.34919 -9.18959 -8.80738 -8.15205 -6.61674 -4.04837 1.56977 2.49022 3.02106 3.03212 3.16017 3.19330 3.23551 3.27197 3.44927 3.86020 4.05210 4.10716 4.52710 4.80221 4.87121 5.04034 5.32283 5.48535 5.66094 5.78092 5.83874 5.98818 6.30759 6.50478 6.89590 7.01469 7.35362 7.38140 7.39509 7.74188 8.15792 8.22783 8.85052 8.89272 9.10945 9.58856 10.45763 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020336 B = 0.005709 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.564856 B = 4902.936532 C = 5928.560504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.029 3.971 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.422 5.422 10 C 0.136 3.864 11 C 0.489 3.511 12 O -0.507 6.507 13 O -0.531 6.531 14 C 0.458 3.542 15 O -0.578 6.578 16 C -0.137 4.137 17 C 0.115 3.885 18 H 0.137 0.863 19 N -0.701 5.701 20 C 0.699 3.301 21 O -0.555 6.555 22 N -0.681 5.681 23 C 0.529 3.471 24 O -0.469 6.469 25 H 0.274 0.726 26 H 0.141 0.859 27 H 0.077 0.923 28 H 0.394 0.606 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.450 0.550 32 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -7.644 -4.552 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.131 0.869 9 N -0.141 5.141 10 C 0.010 3.990 11 C 0.330 3.670 12 O -0.393 6.393 13 O -0.342 6.342 14 C 0.247 3.753 15 O -0.463 6.463 16 C -0.179 4.179 17 C 0.005 3.995 18 H 0.154 0.846 19 N -0.367 5.367 20 C 0.398 3.602 21 O -0.430 6.430 22 N -0.352 5.352 23 C 0.314 3.686 24 O -0.338 6.338 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.095 0.905 28 H 0.251 0.749 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.297 0.703 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.565 -7.790 -4.370 9.068 hybrid contribution -0.308 0.796 0.428 0.955 sum -1.874 -6.995 -3.941 8.244 Atomic orbital electron populations 1.69818 1.06120 1.28314 1.47906 1.25263 0.95400 1.00160 0.96505 0.85821 0.79358 0.80217 0.78649 1.20088 1.21015 1.19328 1.19797 0.98117 0.83089 1.42172 0.86950 1.43448 1.15843 1.05673 1.49091 1.20939 0.80953 1.05739 0.91396 1.23836 0.82465 0.70898 0.89824 1.90631 1.83944 1.45086 1.19634 1.84522 1.17901 1.85627 1.46189 1.19552 0.87842 0.83645 0.84271 1.90518 1.23589 1.86001 1.46205 1.21837 1.00120 0.92807 1.03089 1.21756 0.84299 0.92805 1.00634 0.84574 1.45714 1.21702 1.24527 1.44732 1.15951 0.82131 0.81068 0.81022 1.91027 1.35420 1.74525 1.41991 1.44329 1.19974 1.26578 1.44364 1.20935 0.83877 0.86019 0.77747 1.90835 1.18789 1.66723 1.57450 0.91579 0.84167 0.90511 0.74923 0.89131 0.87829 0.70270 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.57 9.27 55.50 0.51 -21.05 16 2 C 0.03 0.71 4.95 -17.47 -0.09 0.63 16 3 Si 0.93 19.34 29.60 -169.99 -5.03 14.31 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.30 -7.71 9.42 -14.93 -0.14 -7.85 16 8 H 0.11 2.98 7.31 -52.49 -0.38 2.60 16 9 N -0.42 -9.58 2.17 -116.09 -0.25 -9.84 16 10 C 0.14 2.70 4.98 -5.20 -0.03 2.67 16 11 C 0.49 10.02 6.05 36.01 0.22 10.24 16 12 O -0.51 -12.26 17.03 -18.75 -0.32 -12.58 16 13 O -0.53 -8.85 13.42 -39.25 -0.53 -9.38 16 14 C 0.46 9.57 7.32 -10.98 -0.08 9.49 16 15 O -0.58 -13.32 14.46 5.54 0.08 -13.24 16 16 C -0.14 -2.16 4.08 -27.88 -0.11 -2.27 16 17 C 0.11 1.60 3.19 -68.20 -0.22 1.38 16 18 H 0.14 1.91 8.07 -51.93 -0.42 1.49 16 19 N -0.70 -9.78 5.85 -59.19 -0.35 -10.13 16 20 C 0.70 9.68 8.99 -88.02 -0.79 8.89 16 21 O -0.55 -9.35 18.04 5.34 0.10 -9.25 16 22 N -0.68 -7.68 5.70 -15.79 -0.09 -7.77 16 23 C 0.53 6.79 8.14 -10.56 -0.09 6.70 16 24 O -0.47 -7.02 18.02 5.59 0.10 -6.92 16 25 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 26 H 0.14 2.95 6.01 -51.93 -0.31 2.64 16 27 H 0.08 1.20 6.66 -51.93 -0.35 0.86 16 28 H 0.39 4.96 9.10 45.56 0.41 5.37 16 29 H 0.09 1.23 7.41 -51.93 -0.38 0.85 16 30 H 0.10 1.66 7.56 -51.93 -0.39 1.26 16 31 H 0.45 6.64 8.01 -40.82 -0.33 6.31 16 32 H 0.43 3.72 8.96 -40.82 -0.37 3.36 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -32.32 289.44 -4.39 -36.71 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -1.65 Total: 14.89 kcal Atomic # 6 Polarization: 31.21 SS G_CDS: -1.32 Total: 29.89 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.17 Total: -48.79 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.57 Total: -51.37 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.32 -4.39 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.946 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds