Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48498 * 109.47104 * 264.98387 * 3 2 1 5 5 H 1.48500 * 109.47078 * 24.98206 * 3 2 1 6 6 H 1.48495 * 109.47504 * 144.98233 * 3 2 1 7 7 C 1.38955 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 201.39182 * 7 2 1 9 9 N 1.37095 * 119.99582 * 21.39638 * 7 2 1 10 10 C 1.46496 * 120.00515 * 11.50686 * 9 7 2 11 11 C 1.50701 * 109.47219 * 264.66999 * 10 9 7 12 12 O 1.20824 * 119.99670 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99793 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99502 * 191.50284 * 9 7 2 15 15 O 1.21295 * 120.00354 * 0.02562 * 14 9 7 16 16 C 1.50704 * 119.99809 * 179.97438 * 14 9 7 17 17 C 1.53001 * 109.46984 * 180.02562 * 16 14 9 18 18 H 1.09001 * 110.65672 * 57.91368 * 17 16 14 19 19 N 1.47319 * 110.59938 * 295.00163 * 17 16 14 20 20 C 1.34526 * 106.61887 * 241.25188 * 19 17 16 21 21 O 1.21534 * 123.77245 * 180.22856 * 20 19 17 22 22 N 1.33794 * 112.45845 * 0.21927 * 20 19 17 23 23 C 1.34770 * 111.64267 * 0.02562 * 22 20 19 24 24 O 1.21240 * 127.15335 * 180.02562 * 23 22 20 25 25 H 0.97003 * 119.99413 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47010 * 24.66469 * 10 9 7 27 27 H 1.08999 * 109.47270 * 144.66177 * 10 9 7 28 28 H 0.96709 * 116.99318 * 179.97438 * 13 11 10 29 29 H 1.09000 * 109.47025 * 60.00780 * 16 14 9 30 30 H 1.09003 * 109.47381 * 300.00511 * 16 14 9 31 31 H 0.96992 * 126.68710 * 61.50578 * 19 17 16 32 32 H 0.96998 * 124.17616 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6017 1.9852 -1.3947 5 1 1.3967 2.6810 0.5913 6 1 3.4887 1.4731 0.8034 7 6 2.0089 -1.2034 0.0005 8 1 3.0331 -1.2355 0.3417 9 7 1.3942 -2.3499 -0.4321 10 6 0.1062 -2.2735 -1.1260 11 6 -1.0107 -2.4851 -0.1366 12 8 -0.7568 -2.6801 1.0284 13 8 -2.2875 -2.4578 -0.5500 14 6 1.9749 -3.5473 -0.2191 15 8 3.0411 -3.6107 0.3557 16 6 1.2990 -4.8077 -0.6942 17 6 2.1611 -6.0176 -0.3286 18 1 2.3319 -6.0572 0.7472 19 7 3.4419 -5.9800 -1.0556 20 6 3.4832 -7.0865 -1.8197 21 8 4.4131 -7.3693 -2.5494 22 7 2.3864 -7.8410 -1.6863 23 6 1.5125 -7.2981 -0.8158 24 8 0.4342 -7.7441 -0.4865 25 1 -0.4849 0.8401 -0.0004 26 1 0.0005 -1.2923 -1.5889 27 1 0.0615 -3.0447 -1.8950 28 1 -2.9692 -2.5991 0.1212 29 1 1.1710 -4.7658 -1.7758 30 1 0.3236 -4.8993 -0.2162 31 1 4.1241 -5.2935 -0.9925 32 1 2.2385 -8.6755 -2.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = -183.143382 kcal Electronic energy + Delta-G solvation = -23175.280785 eV Core-core repulsion = 19329.435209 eV Total energy + Delta-G solvation = -3845.845576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.42322 -41.21745 -39.97932 -39.72186 -37.46127 -36.94540 -36.37472 -34.97380 -33.79953 -31.81971 -29.50500 -27.56456 -25.82749 -23.75197 -22.89470 -22.52751 -20.82069 -19.41035 -19.01293 -18.72836 -18.23094 -17.87043 -17.61934 -17.35853 -16.88086 -16.58222 -16.29685 -16.21480 -15.86939 -15.65225 -15.29883 -14.82144 -14.43215 -13.98859 -13.61574 -13.48633 -13.41005 -12.89133 -12.62758 -12.31906 -12.21242 -12.14126 -12.11314 -11.54140 -11.50765 -11.44195 -10.92497 -10.52873 -10.48202 -9.91027 -8.43160 -5.92249 0.46508 1.37471 1.42899 1.46804 1.56380 1.68280 1.85591 1.92409 2.07246 2.26213 2.54168 2.80873 3.03947 3.16066 3.52582 3.84968 3.89398 4.21778 4.38995 4.49208 4.60460 4.82775 4.96323 5.08624 5.48532 5.74940 5.89530 5.96041 5.98673 6.32514 6.36517 7.09005 7.12007 7.30270 7.44632 7.88151 8.62090 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.020336 B = 0.005709 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.564856 B = 4902.936532 C = 5928.560504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.000 4.000 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.440 5.440 10 C 0.133 3.867 11 C 0.495 3.505 12 O -0.551 6.551 13 O -0.518 6.518 14 C 0.455 3.545 15 O -0.607 6.607 16 C -0.126 4.126 17 C 0.115 3.885 18 H 0.136 0.864 19 N -0.700 5.700 20 C 0.707 3.293 21 O -0.582 6.582 22 N -0.661 5.661 23 C 0.547 3.453 24 O -0.483 6.483 25 H 0.275 0.725 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.414 0.586 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.446 0.554 32 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -8.261 -5.634 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.202 4.202 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.462 4.462 8 H 0.105 0.895 9 N -0.158 5.158 10 C 0.008 3.992 11 C 0.338 3.662 12 O -0.441 6.441 13 O -0.330 6.330 14 C 0.245 3.755 15 O -0.493 6.493 16 C -0.167 4.167 17 C 0.005 3.995 18 H 0.153 0.847 19 N -0.364 5.364 20 C 0.406 3.594 21 O -0.459 6.459 22 N -0.332 5.332 23 C 0.333 3.667 24 O -0.353 6.353 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.274 0.726 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.293 0.707 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.506 -8.435 -5.483 10.368 hybrid contribution -0.072 0.951 0.786 1.236 sum -2.578 -7.485 -4.698 9.205 Atomic orbital electron populations 1.69896 1.06709 1.28792 1.47970 1.25877 0.96130 1.02220 0.95931 0.84993 0.77754 0.76943 0.78918 1.18789 1.20836 1.20348 1.19684 0.97684 0.84981 1.43854 0.89506 1.43580 1.16976 1.05576 1.49717 1.21063 0.79716 1.06643 0.91795 1.23916 0.83513 0.69681 0.89109 1.90618 1.84783 1.47305 1.21349 1.84458 1.17095 1.84797 1.46635 1.20387 0.87330 0.84697 0.83125 1.90496 1.24924 1.86714 1.47185 1.21747 0.99735 0.90568 1.04680 1.21716 0.84126 0.92865 1.00763 0.84700 1.45703 1.21582 1.24520 1.44630 1.15891 0.82124 0.80946 0.80410 1.91020 1.36589 1.75109 1.43170 1.44048 1.18687 1.26744 1.43765 1.20477 0.83419 0.85350 0.77466 1.90851 1.19476 1.66999 1.57972 0.91513 0.85396 0.86083 0.72612 0.86283 0.87465 0.70734 0.71069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.45 9.27 21.66 0.20 -43.25 16 2 C 0.00 -0.02 4.95 84.93 0.42 0.40 16 3 Si 0.99 39.77 29.60 68.60 2.03 41.80 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.33 -17.22 9.42 84.04 0.79 -16.43 16 8 H 0.09 4.79 7.31 -2.91 -0.02 4.77 16 9 N -0.44 -19.89 2.17 -639.59 -1.39 -21.28 16 10 C 0.13 5.10 4.98 85.63 0.43 5.52 16 11 C 0.50 19.61 6.05 71.24 0.43 20.04 16 12 O -0.55 -26.42 17.03 21.97 0.37 -26.04 16 13 O -0.52 -16.01 13.42 -51.39 -0.69 -16.70 16 14 C 0.45 18.81 7.32 87.66 0.64 19.45 16 15 O -0.61 -28.31 14.46 -3.08 -0.04 -28.35 16 16 C -0.13 -3.73 4.08 29.85 0.12 -3.61 16 17 C 0.12 3.01 3.19 44.37 0.14 3.15 16 18 H 0.14 3.63 8.07 -2.39 -0.02 3.62 16 19 N -0.70 -18.60 5.85 -459.60 -2.69 -21.29 16 20 C 0.71 18.25 8.99 179.44 1.61 19.87 16 21 O -0.58 -18.76 18.04 -3.82 -0.07 -18.83 16 22 N -0.66 -13.19 5.70 -441.12 -2.52 -15.70 16 23 C 0.55 12.65 8.14 87.94 0.72 13.37 16 24 O -0.48 -13.18 18.02 -2.91 -0.05 -13.23 16 25 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 26 H 0.13 5.26 6.01 -2.38 -0.01 5.24 16 27 H 0.12 3.43 6.66 -2.39 -0.02 3.42 16 28 H 0.41 9.41 9.10 -74.05 -0.67 8.74 16 29 H 0.12 2.84 7.41 -2.39 -0.02 2.82 16 30 H 0.11 3.19 7.56 -2.39 -0.02 3.17 16 31 H 0.45 12.93 8.01 -92.71 -0.74 12.18 16 32 H 0.44 6.43 8.96 -92.71 -0.83 5.60 16 Total: -1.00 -69.60 289.44 -0.54 -70.14 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -1.00 Total: 30.97 kcal Atomic # 6 Polarization: 56.47 SS G_CDS: 5.30 Total: 61.77 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -6.39 Total: -101.52 kcal Atomic # 8 Polarization: -102.67 SS G_CDS: -0.48 Total: -103.15 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -69.60 -0.54 -70.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.999 kcal (2) G-P(sol) polarization free energy of solvation -69.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds