Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99707 * 2 1 4 4 C 1.53003 * 109.47146 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47102 * 64.99598 * 4 3 2 6 6 C 1.36940 * 120.00211 * 275.00053 * 5 4 3 7 7 H 1.07992 * 120.00384 * 142.03302 * 6 5 4 8 8 C 1.38818 * 119.99898 * 322.03677 * 6 5 4 9 9 N 1.31622 * 120.00021 * 157.59718 * 8 6 5 10 10 Si 1.86802 * 119.99978 * 337.59814 * 8 6 5 11 11 H 1.48501 * 109.47011 * 95.34370 * 10 8 6 12 12 H 1.48499 * 109.47153 * 215.34356 * 10 8 6 13 13 H 1.48500 * 109.47163 * 335.34659 * 10 8 6 14 14 S 1.65600 * 119.99932 * 95.00380 * 5 4 3 15 15 O 1.42100 * 106.40148 * 160.24523 * 14 5 4 16 16 O 1.42090 * 106.40182 * 27.32355 * 14 5 4 17 17 C 1.76202 * 107.21445 * 273.78293 * 14 5 4 18 18 C 1.38231 * 119.99982 * 88.85803 * 17 14 5 19 19 C 1.38236 * 120.00228 * 179.97438 * 18 17 14 20 20 C 1.38239 * 119.99777 * 359.95627 * 19 18 17 21 21 C 1.38240 * 119.99817 * 0.27824 * 20 19 18 22 22 C 1.38230 * 120.00201 * 359.50740 * 21 20 19 23 23 H 1.08995 * 109.47525 * 300.00402 * 1 2 3 24 24 H 1.08995 * 109.47357 * 60.00636 * 1 2 3 25 25 H 1.09000 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47238 * 59.99614 * 3 2 1 27 27 H 1.09004 * 109.46790 * 299.99692 * 3 2 1 28 28 H 1.09000 * 109.46862 * 304.99976 * 4 3 2 29 29 H 1.08995 * 109.47436 * 184.99700 * 4 3 2 30 30 H 0.96998 * 120.00026 * 180.02562 * 9 8 6 31 31 H 1.08000 * 120.00360 * 359.97438 * 18 17 14 32 32 H 1.07991 * 120.00398 * 179.97438 * 19 18 17 33 33 H 1.08002 * 120.00121 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.99446 * 179.72204 * 21 20 19 35 35 H 1.07998 * 119.99984 * 180.24998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 3.9988 -0.7997 -1.3699 7 1 3.7150 -1.2666 -2.3014 8 6 4.3870 -1.5825 -0.2912 9 7 4.0090 -2.8413 -0.2218 10 14 5.4459 -0.8493 1.0618 11 1 4.5776 -0.3865 2.1740 12 1 6.3888 -1.8799 1.5658 13 1 6.2132 0.3015 0.5211 14 16 4.4453 1.5130 -2.5263 15 8 5.2279 0.6853 -3.3758 16 8 4.9262 2.7272 -1.9663 17 6 2.9921 1.9246 -3.4337 18 6 2.2644 3.0513 -3.0993 19 6 1.1246 3.3746 -3.8115 20 6 0.7130 2.5716 -4.8588 21 6 1.4381 1.4422 -5.1901 22 6 2.5803 1.1214 -4.4807 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8464 -0.8901 28 1 3.8514 0.5684 0.8409 29 1 3.9785 2.1766 0.0889 30 1 4.2800 -3.3882 0.5321 31 1 2.5863 3.6791 -2.2816 32 1 0.5558 4.2546 -3.5500 33 1 -0.1777 2.8239 -5.4150 34 1 1.1140 0.8124 -6.0054 35 1 3.1490 0.2413 -4.7422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317228927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -90.674403 kcal Electronic energy + Delta-G solvation = -21731.991062 eV Core-core repulsion = 18436.448456 eV Total energy + Delta-G solvation = -3295.542605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.98830 -39.04100 -38.12089 -37.09584 -36.71604 -33.79661 -32.20207 -31.96668 -30.58346 -27.19076 -25.98145 -24.19569 -23.70187 -23.64018 -20.28790 -19.38214 -18.71995 -18.45433 -17.48842 -17.00755 -16.84659 -16.57484 -16.20352 -15.81743 -15.53616 -15.44030 -14.74334 -14.58271 -14.44406 -14.10847 -13.76666 -13.62274 -13.19376 -13.10801 -13.03382 -12.93328 -12.73482 -12.43546 -12.28543 -12.17677 -11.83557 -11.75015 -11.56412 -10.77745 -10.44040 -10.24431 -9.97049 -9.90179 -8.29685 -5.89480 -0.42716 -0.07815 0.35308 1.25603 1.38512 1.46120 2.22442 2.35124 2.65169 2.86083 3.06841 3.17596 3.46137 3.91049 4.00419 4.11901 4.13487 4.21906 4.43130 4.44619 4.46479 4.51866 4.61531 4.63547 4.74232 4.89239 4.92092 5.00713 5.17466 5.27051 5.31008 5.40176 5.82139 5.93543 6.29022 6.57195 7.18888 7.25938 8.85612 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.008586 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.336212 B = 3260.238201 C = 3809.010417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.389 6.389 3 C 0.048 3.952 4 C 0.092 3.908 5 N -0.870 5.870 6 C -0.281 4.281 7 H 0.068 0.932 8 C 0.036 3.964 9 N -0.905 5.905 10 Si 0.909 3.091 11 H -0.251 1.251 12 H -0.291 1.291 13 H -0.266 1.266 14 S 2.657 3.343 15 O -0.999 6.999 16 O -1.003 7.003 17 C -0.668 4.668 18 C -0.041 4.041 19 C -0.138 4.138 20 C -0.062 4.062 21 C -0.143 4.143 22 C -0.042 4.042 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.271 0.729 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.155 0.845 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 12.880 -3.325 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.034 4.034 5 N -0.701 5.701 6 C -0.414 4.414 7 H 0.085 0.915 8 C -0.169 4.169 9 N -0.545 5.545 10 Si 0.736 3.264 11 H -0.177 1.177 12 H -0.219 1.219 13 H -0.190 1.190 14 S 2.758 3.242 15 O -0.989 6.989 16 O -0.993 6.993 17 C -0.758 4.758 18 C -0.060 4.060 19 C -0.156 4.156 20 C -0.080 4.080 21 C -0.162 4.162 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.188 0.812 34 H 0.173 0.827 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.158 12.872 -3.464 16.759 hybrid contribution 0.015 -0.305 0.496 0.582 sum -10.142 12.567 -2.968 16.420 Atomic orbital electron populations 1.22806 0.81225 1.02581 1.00273 1.88261 1.19828 1.27404 1.95262 1.23085 0.93266 0.85530 1.01187 1.21946 0.94501 0.98868 0.88075 1.52816 1.78376 1.14130 1.24815 1.18117 1.43360 0.78744 1.01188 0.91470 1.25700 0.96501 0.95024 0.99639 1.69927 1.43394 1.08947 1.32224 0.86408 0.80183 0.78729 0.81084 1.17727 1.21855 1.19017 1.02974 0.74934 0.72209 0.74128 1.93430 1.68366 1.68760 1.68379 1.93415 1.79643 1.47742 1.78496 1.30646 1.24161 1.07303 1.13740 1.21177 0.93770 0.92801 0.98286 1.21698 0.96216 1.01546 0.96156 1.21932 0.98847 0.92231 0.94993 1.21626 0.94601 0.98998 1.00961 1.21059 0.96219 0.96632 0.92287 0.92703 0.93873 0.90511 0.90239 0.92589 0.91889 0.87027 0.91939 0.83733 0.81450 0.81235 0.82749 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.07 16 2 O -0.39 -15.90 9.94 -148.98 -1.48 -17.38 16 3 C 0.05 1.64 6.28 71.98 0.45 2.10 16 4 C 0.09 3.76 5.10 86.38 0.44 4.20 16 5 N -0.87 -41.56 2.46 -343.45 -0.84 -42.41 16 6 C -0.28 -15.74 8.54 84.03 0.72 -15.02 16 7 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 8 C 0.04 2.04 5.32 84.86 0.45 2.49 16 9 N -0.91 -54.18 13.97 21.65 0.30 -53.88 16 10 Si 0.91 44.30 25.07 68.60 1.72 46.02 16 11 H -0.25 -11.18 6.68 99.48 0.66 -10.52 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 14 S 2.66 119.59 5.65 -56.49 -0.32 119.27 16 15 O -1.00 -52.23 16.41 -128.00 -2.10 -54.33 16 16 O -1.00 -44.65 15.95 -128.00 -2.04 -46.69 16 17 C -0.67 -24.20 5.91 22.27 0.13 -24.07 16 18 C -0.04 -1.17 8.17 22.27 0.18 -0.98 16 19 C -0.14 -2.84 10.05 22.27 0.22 -2.61 16 20 C -0.06 -1.20 10.05 22.27 0.22 -0.97 16 21 C -0.14 -3.56 10.05 22.27 0.22 -3.34 16 22 C -0.04 -1.46 9.52 22.27 0.21 -1.24 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.73 6.65 -2.38 -0.02 1.72 16 28 H 0.06 2.77 3.11 -2.39 -0.01 2.76 16 29 H 0.11 3.96 6.96 -2.39 -0.02 3.94 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.14 3.70 7.64 -2.91 -0.02 3.68 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.12 4.47 7.59 -2.91 -0.02 4.45 16 Total: -1.00 -74.98 305.39 0.79 -74.18 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.05 Total: 12.59 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 4.51 Total: -37.38 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -0.54 Total: -96.29 kcal Atomic # 8 Polarization: -112.78 SS G_CDS: -5.62 Total: -118.40 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.72 Total: 46.02 kcal Atomic # 16 Polarization: 119.59 SS G_CDS: -0.32 Total: 119.27 kcal Total: -74.98 0.79 -74.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317228927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.491 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds