Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00391 * 2 1 4 4 H 1.48494 * 109.46840 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46845 * 30.00025 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00062 * 3 2 1 7 7 C 1.37884 * 119.99340 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99516 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47115 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47148 * 180.02562 * 10 9 7 12 12 O 1.42090 * 110.54328 * 68.38016 * 11 10 9 13 13 O 1.42105 * 110.54394 * 291.62516 * 11 10 9 14 14 N 1.65604 * 104.44614 * 180.02562 * 11 10 9 15 15 C 1.47583 * 134.49381 * 90.00621 * 14 11 10 16 16 C 1.53947 * 86.11634 * 155.35282 * 15 14 11 17 17 N 1.46496 * 113.74052 * 137.94901 * 16 15 14 18 18 C 1.36880 * 126.39785 * 119.99427 * 17 16 15 19 19 C 1.34674 * 106.82015 * 179.73791 * 18 17 16 20 20 N 1.34130 * 108.01710 * 0.23538 * 19 18 17 21 21 C 1.30496 * 109.26014 * 359.97438 * 20 19 18 22 22 C 1.47582 * 134.48999 * 269.99487 * 14 11 10 23 23 H 0.97001 * 119.99772 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46823 * 59.99943 * 9 7 2 25 25 H 1.08995 * 109.47444 * 300.00283 * 9 7 2 26 26 H 1.09000 * 109.46454 * 59.99955 * 10 9 7 27 27 H 1.08995 * 109.47472 * 300.00604 * 10 9 7 28 28 H 1.08998 * 113.76946 * 41.04996 * 15 14 11 29 29 H 1.09001 * 113.86518 * 269.66573 * 15 14 11 30 30 H 1.08990 * 113.74120 * 269.14864 * 16 15 14 31 31 H 1.08002 * 126.59253 * 0.02562 * 18 17 16 32 32 H 1.07997 * 125.99347 * 180.23004 * 19 18 17 33 33 H 1.07994 * 125.65225 * 179.97438 * 21 20 19 34 34 H 1.08998 * 113.76540 * 90.34474 * 22 14 11 35 35 H 1.08996 * 113.77157 * 318.94673 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6368 0.0014 11 16 5.8354 -2.6368 0.0014 12 8 6.3340 -2.1454 1.2379 13 8 6.3341 -2.1476 -1.2360 14 7 6.2484 -4.2405 0.0023 15 6 6.5066 -5.2427 -1.0499 16 6 7.3569 -5.9759 0.0033 17 7 7.1706 -7.4290 0.0041 18 6 8.1376 -8.3720 -0.2182 19 6 7.5391 -9.5744 -0.1205 20 7 6.2409 -9.3711 0.1488 21 6 6.0123 -8.0884 0.2223 22 6 6.5065 -5.2415 1.0556 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6810 -0.8904 26 1 3.6576 -3.1515 -0.8879 27 1 3.6584 -3.1496 0.8919 28 1 7.0840 -4.8582 -1.8906 29 1 5.6195 -5.7948 -1.3603 30 1 8.4064 -5.6821 0.0019 31 1 9.1811 -8.1873 -0.4267 32 1 8.0200 -10.5342 -0.2384 33 1 5.0561 -7.6301 0.4267 34 1 5.6183 -5.7924 1.3651 35 1 7.0839 -4.8561 1.8959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542051103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = 32.177654 kcal Electronic energy + Delta-G solvation = -20058.683438 eV Core-core repulsion = 16800.760849 eV Total energy + Delta-G solvation = -3257.922589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41499 -39.40523 -36.88961 -35.75980 -34.03664 -33.21273 -31.56365 -29.73180 -27.93260 -26.76926 -26.01619 -23.10161 -21.60036 -21.24633 -20.35553 -18.78649 -18.18286 -17.72730 -16.93004 -16.34709 -15.59867 -15.43374 -15.22030 -14.41524 -14.30866 -14.24791 -13.99896 -13.66320 -13.48427 -13.19596 -12.98337 -12.86287 -11.99257 -11.94215 -11.90096 -11.76592 -11.58320 -11.33995 -11.31726 -10.53314 -10.29005 -10.21438 -9.91869 -9.84920 -9.55048 -9.18282 -8.76720 -8.72549 -6.22610 -4.24637 0.36529 1.75342 2.31976 2.68197 2.95860 3.21447 3.29146 3.32238 3.75135 3.90563 3.99923 4.11344 4.29891 4.32747 4.49723 4.58972 4.95182 4.99818 5.07659 5.14104 5.16020 5.26040 5.32761 5.39239 5.47249 5.70898 5.85688 6.05845 6.16674 6.48965 6.71447 6.84063 6.89594 7.47302 7.84420 8.29620 8.77953 9.36506 10.89695 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.003735 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.911357 B = 7494.831848 C = 8044.715095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.522 4.522 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.581 4.581 11 S 2.607 3.393 12 O -0.955 6.955 13 O -0.956 6.956 14 N -1.038 6.038 15 C 0.118 3.882 16 C 0.100 3.900 17 N -0.451 5.451 18 C -0.054 4.054 19 C -0.032 4.032 20 N -0.494 5.494 21 C 0.184 3.816 22 C 0.120 3.880 23 H 0.267 0.733 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.094 0.906 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.503 -14.594 -0.158 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.715 4.715 11 S 2.707 3.293 12 O -0.946 6.946 13 O -0.946 6.946 14 N -0.875 5.875 15 C -0.008 4.008 16 C -0.006 4.006 17 N -0.135 5.135 18 C -0.187 4.187 19 C -0.179 4.179 20 N -0.212 5.212 21 C -0.098 4.098 22 C -0.006 4.006 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.154 0.846 31 H 0.191 0.809 32 H 0.185 0.815 33 H 0.221 0.779 34 H 0.112 0.888 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.376 -14.007 -0.047 21.549 hybrid contribution 0.230 1.231 -0.150 1.261 sum 16.606 -12.776 -0.197 20.953 Atomic orbital electron populations 1.69878 1.06217 1.27348 1.49713 1.24991 0.94834 0.99194 0.94059 0.86916 0.80662 0.83666 0.79149 1.19634 1.20671 1.18660 1.20827 0.87698 0.94958 1.52593 0.90398 1.19422 1.00036 0.87300 0.97884 1.30352 1.20913 1.09283 1.10927 1.05343 0.78923 0.70870 0.74141 1.93556 1.79079 1.76579 1.45381 1.93557 1.79082 1.76663 1.45320 1.60497 1.86214 1.25673 1.15090 1.23174 0.98645 0.86864 0.92131 1.23838 1.02463 0.75810 0.98459 1.45637 1.09183 1.06610 1.52084 1.22780 0.95868 0.89062 1.10991 1.22328 0.90761 0.97642 1.07219 1.70338 1.16858 1.14824 1.19167 1.24999 0.91819 0.88008 1.05002 1.23122 0.98531 0.86897 0.92082 0.92291 0.94911 0.95354 0.85617 0.85594 0.88282 0.88834 0.84624 0.80895 0.81452 0.77891 0.88793 0.88122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.29 9.66 -34.44 -0.33 -14.63 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 10 C -0.58 -10.01 6.12 37.16 0.23 -9.78 16 11 S 2.61 40.82 5.93 -107.50 -0.64 40.18 16 12 O -0.96 -17.52 18.02 -57.54 -1.04 -18.55 16 13 O -0.96 -17.51 18.02 -57.54 -1.04 -18.55 16 14 N -1.04 -11.16 3.99 -118.91 -0.47 -11.63 16 15 C 0.12 0.96 8.59 -2.97 -0.03 0.94 16 16 C 0.10 0.69 4.84 -70.14 -0.34 0.35 16 17 N -0.45 -3.53 2.95 -113.14 -0.33 -3.86 16 18 C -0.05 -0.41 11.58 -16.56 -0.19 -0.60 16 19 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 20 N -0.49 -5.68 11.25 -14.66 -0.16 -5.85 16 21 C 0.18 1.68 11.38 -90.37 -1.03 0.65 16 22 C 0.12 0.95 8.47 -2.97 -0.03 0.93 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 25 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 26 H 0.13 1.97 8.14 -51.92 -0.42 1.54 16 27 H 0.13 1.96 8.14 -51.93 -0.42 1.54 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.66 7.92 -51.93 -0.41 0.25 16 30 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.20 1.36 7.43 -52.49 -0.39 0.97 16 34 H 0.09 0.60 6.91 -51.93 -0.36 0.24 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -36.36 314.53 -9.45 -45.81 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.47 Total: -1.84 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -2.14 Total: -20.97 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.20 Total: -47.26 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -2.07 Total: -37.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 40.82 SS G_CDS: -0.64 Total: 40.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.36 -9.45 -45.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542051103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.993 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds