Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00391 * 2 1 4 4 H 1.48494 * 109.46840 * 269.99922 * 3 2 1 5 5 H 1.48501 * 109.46845 * 30.00025 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00062 * 3 2 1 7 7 C 1.37884 * 119.99340 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00087 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99516 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47115 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47148 * 180.02562 * 10 9 7 12 12 O 1.42090 * 110.54328 * 68.38016 * 11 10 9 13 13 O 1.42105 * 110.54394 * 291.62516 * 11 10 9 14 14 N 1.65604 * 104.44614 * 180.02562 * 11 10 9 15 15 C 1.47583 * 134.49381 * 90.00621 * 14 11 10 16 16 C 1.53947 * 86.11634 * 155.35282 * 15 14 11 17 17 N 1.46496 * 113.74052 * 137.94901 * 16 15 14 18 18 C 1.36880 * 126.39785 * 119.99427 * 17 16 15 19 19 C 1.34674 * 106.82015 * 179.73791 * 18 17 16 20 20 N 1.34130 * 108.01710 * 0.23538 * 19 18 17 21 21 C 1.30496 * 109.26014 * 359.97438 * 20 19 18 22 22 C 1.47582 * 134.48999 * 269.99487 * 14 11 10 23 23 H 0.97001 * 119.99772 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46823 * 59.99943 * 9 7 2 25 25 H 1.08995 * 109.47444 * 300.00283 * 9 7 2 26 26 H 1.09000 * 109.46454 * 59.99955 * 10 9 7 27 27 H 1.08995 * 109.47472 * 300.00604 * 10 9 7 28 28 H 1.08998 * 113.76946 * 41.04996 * 15 14 11 29 29 H 1.09001 * 113.86518 * 269.66573 * 15 14 11 30 30 H 1.08990 * 113.74120 * 269.14864 * 16 15 14 31 31 H 1.08002 * 126.59253 * 0.02562 * 18 17 16 32 32 H 1.07997 * 125.99347 * 180.23004 * 19 18 17 33 33 H 1.07994 * 125.65225 * 179.97438 * 21 20 19 34 34 H 1.08998 * 113.76540 * 90.34474 * 22 14 11 35 35 H 1.08996 * 113.77157 * 318.94673 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6368 0.0014 11 16 5.8354 -2.6368 0.0014 12 8 6.3340 -2.1454 1.2379 13 8 6.3341 -2.1476 -1.2360 14 7 6.2484 -4.2405 0.0023 15 6 6.5066 -5.2427 -1.0499 16 6 7.3569 -5.9759 0.0033 17 7 7.1706 -7.4290 0.0041 18 6 8.1376 -8.3720 -0.2182 19 6 7.5391 -9.5744 -0.1205 20 7 6.2409 -9.3711 0.1488 21 6 6.0123 -8.0884 0.2223 22 6 6.5065 -5.2415 1.0556 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6798 0.8895 25 1 3.8745 -0.6810 -0.8904 26 1 3.6576 -3.1515 -0.8879 27 1 3.6584 -3.1496 0.8919 28 1 7.0840 -4.8582 -1.8906 29 1 5.6195 -5.7948 -1.3603 30 1 8.4064 -5.6821 0.0019 31 1 9.1811 -8.1873 -0.4267 32 1 8.0200 -10.5342 -0.2384 33 1 5.0561 -7.6301 0.4267 34 1 5.6183 -5.7924 1.3651 35 1 7.0839 -4.8561 1.8959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542051103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = 5.502740 kcal Electronic energy + Delta-G solvation = -20059.840149 eV Core-core repulsion = 16800.760849 eV Total energy + Delta-G solvation = -3259.079300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.03865 -40.10450 -38.23343 -37.10918 -35.91667 -33.90269 -33.49597 -30.36099 -28.74228 -27.81882 -27.40492 -23.87038 -23.02407 -22.17426 -21.05823 -19.85726 -19.33061 -18.89189 -18.24143 -17.42947 -16.93609 -16.45699 -16.27530 -15.90069 -15.44280 -14.90257 -14.87087 -14.82014 -14.67878 -14.29928 -13.83483 -13.78571 -13.58010 -13.29929 -13.23536 -13.09752 -12.99565 -12.57930 -12.44162 -12.26238 -11.97970 -11.74787 -11.37681 -10.89768 -10.86724 -10.51362 -10.16964 -9.37759 -8.38788 -6.45085 -0.86586 1.15020 1.30829 1.32611 1.42293 1.42649 1.96375 2.27666 2.29446 2.75748 2.91769 2.95394 3.17941 3.28725 3.82201 3.87827 3.94693 3.96007 4.06868 4.39034 4.41583 4.53258 4.54168 4.62371 4.75066 4.75563 4.90199 5.05702 5.06761 5.15199 5.42532 5.45669 5.90353 6.13986 6.29705 6.61373 7.19618 7.21327 8.76830 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.003735 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.911357 B = 7494.831848 C = 8044.715095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.012 3.988 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.048 0.952 9 C -0.018 4.018 10 C -0.592 4.592 11 S 2.646 3.354 12 O -0.982 6.982 13 O -0.982 6.982 14 N -1.037 6.037 15 C 0.112 3.888 16 C 0.116 3.884 17 N -0.448 5.448 18 C -0.042 4.042 19 C -0.060 4.060 20 N -0.537 5.537 21 C 0.174 3.826 22 C 0.113 3.887 23 H 0.270 0.730 24 H 0.033 0.967 25 H 0.031 0.969 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.206 0.794 32 H 0.179 0.821 33 H 0.221 0.779 34 H 0.111 0.889 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.968 -14.900 -0.224 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.186 4.186 3 Si 0.749 3.251 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.057 4.057 10 C -0.723 4.723 11 S 2.744 3.256 12 O -0.972 6.972 13 O -0.973 6.973 14 N -0.877 5.877 15 C -0.013 4.013 16 C 0.010 3.990 17 N -0.131 5.131 18 C -0.175 4.175 19 C -0.206 4.206 20 N -0.256 5.256 21 C -0.108 4.108 22 C -0.012 4.012 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.155 0.845 27 H 0.156 0.844 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.177 0.823 31 H 0.223 0.777 32 H 0.196 0.804 33 H 0.237 0.763 34 H 0.129 0.871 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.831 -14.314 -0.114 23.653 hybrid contribution -0.535 1.129 -0.133 1.256 sum 18.296 -13.185 -0.248 22.553 Atomic orbital electron populations 1.70013 1.07964 1.28450 1.51576 1.25908 0.95650 1.03144 0.93929 0.85997 0.79929 0.79247 0.79900 1.18502 1.19966 1.17135 1.21186 0.90351 0.93828 1.51475 0.93377 1.19374 0.97151 0.91296 0.97872 1.30396 1.23797 1.05875 1.12259 1.03875 0.77236 0.71732 0.72795 1.93517 1.78965 1.78249 1.46498 1.93518 1.78966 1.78331 1.46437 1.60051 1.85079 1.25008 1.17527 1.23477 0.99652 0.86041 0.92148 1.23748 1.03233 0.75013 0.96997 1.45659 1.08916 1.06857 1.51717 1.23255 0.96971 0.88262 1.09003 1.22690 0.90490 0.99128 1.08337 1.70292 1.18325 1.16336 1.20617 1.25329 0.92857 0.87731 1.04871 1.23462 0.99727 0.86036 0.92011 0.92093 0.94901 0.95052 0.84453 0.84365 0.87616 0.87657 0.82344 0.77742 0.80361 0.76298 0.87142 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.93 43.17 27.47 68.60 1.88 45.06 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.53 -29.49 9.66 25.60 0.25 -29.24 16 8 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 9 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 10 C -0.59 -19.81 6.12 71.98 0.44 -19.37 16 11 S 2.65 77.92 5.93 -56.49 -0.34 77.59 16 12 O -0.98 -34.24 18.02 -127.65 -2.30 -36.54 16 13 O -0.98 -34.23 18.02 -127.65 -2.30 -36.53 16 14 N -1.04 -19.39 3.99 -530.12 -2.12 -21.51 16 15 C 0.11 1.47 8.59 86.48 0.74 2.21 16 16 C 0.12 1.16 4.84 46.75 0.23 1.39 16 17 N -0.45 -5.62 2.95 -511.88 -1.51 -7.13 16 18 C -0.04 -0.51 11.58 83.09 0.96 0.45 16 19 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 20 N -0.54 -11.77 11.25 -200.31 -2.25 -14.03 16 21 C 0.17 2.84 11.38 180.26 2.05 4.90 16 22 C 0.11 1.43 8.47 86.48 0.73 2.16 16 23 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 24 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 25 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 26 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 27 H 0.14 4.18 8.14 -2.39 -0.02 4.16 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.11 1.16 7.92 -2.39 -0.02 1.14 16 30 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.22 2.50 7.43 -2.91 -0.02 2.48 16 34 H 0.11 1.05 6.91 -2.39 -0.02 1.04 16 35 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -79.47 314.53 -0.62 -80.09 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.03 Total: 7.23 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 6.98 Total: -37.06 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -5.58 Total: -99.83 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -4.60 Total: -73.08 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: 77.92 SS G_CDS: -0.34 Total: 77.59 kcal Total: -79.47 -0.62 -80.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542051103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.593 kcal (2) G-P(sol) polarization free energy of solvation -79.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds