Wall clock time and date at job start Wed Apr 15 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48493 * 109.47168 * 272.55287 * 3 2 1 5 5 H 1.48506 * 109.46966 * 32.55374 * 3 2 1 6 6 H 1.48501 * 109.46950 * 152.55176 * 3 2 1 7 7 C 1.37884 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99695 * 354.70590 * 7 2 1 9 9 C 1.50695 * 119.99992 * 174.69820 * 7 2 1 10 10 C 1.53006 * 115.54528 * 88.55151 * 9 7 2 11 11 S 1.81398 * 109.47015 * 65.27397 * 10 9 7 12 12 O 1.42096 * 110.54179 * 285.49429 * 11 10 9 13 13 O 1.42094 * 110.54499 * 62.24939 * 11 10 9 14 14 N 1.65600 * 104.44791 * 173.87117 * 11 10 9 15 15 C 1.46507 * 119.99953 * 65.00233 * 14 11 10 16 16 C 1.50694 * 109.47128 * 164.99904 * 15 14 11 17 17 N 1.30493 * 125.64904 * 275.02190 * 16 15 14 18 18 C 1.34133 * 109.25903 * 180.02562 * 17 16 15 19 19 C 1.34667 * 108.01810 * 359.97438 * 18 17 16 20 20 N 1.35049 * 125.65056 * 94.71565 * 16 15 14 21 21 H 0.96997 * 126.39447 * 0.02562 * 20 16 15 22 22 C 1.53001 * 117.50133 * 234.21920 * 9 7 2 23 23 C 1.52993 * 117.50164 * 302.88352 * 9 7 2 24 24 H 0.97005 * 120.00567 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47301 * 305.26807 * 10 9 7 26 26 H 1.08996 * 109.46652 * 185.27075 * 10 9 7 27 27 H 0.96997 * 120.00581 * 244.99787 * 14 11 10 28 28 H 1.09003 * 109.46414 * 284.99914 * 15 14 11 29 29 H 1.08998 * 109.47052 * 44.99443 * 15 14 11 30 30 H 1.08001 * 125.99297 * 180.02562 * 18 17 16 31 31 H 1.08003 * 126.59421 * 179.97438 * 19 18 17 32 32 H 1.08996 * 117.49669 * 215.00421 * 22 9 7 33 33 H 1.08996 * 117.49365 * 0.02657 * 22 9 7 34 34 H 1.08999 * 117.50000 * 359.97200 * 23 9 7 35 35 H 1.09005 * 117.50198 * 144.97347 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4426 2.0776 -1.3986 5 1 1.4745 2.6365 0.7534 6 1 3.5726 1.4251 0.6454 7 6 2.0045 -1.1941 0.0005 8 1 1.4680 -2.1274 0.0873 9 6 3.5067 -1.1969 -0.1201 10 6 4.2747 -1.0989 1.1996 11 16 3.9656 -2.5862 2.1910 12 8 2.6605 -2.5492 2.7519 13 8 4.4404 -3.7430 1.5161 14 7 4.9749 -2.4310 3.4946 15 6 4.7727 -1.3405 4.4519 16 6 5.5558 -1.6231 5.7080 17 7 5.1492 -2.3545 6.7094 18 6 6.1039 -2.3852 7.6511 19 6 7.1416 -1.6450 7.2165 20 7 6.7968 -1.1661 5.9814 21 1 7.3409 -0.6014 5.4105 22 6 4.1243 -2.0422 -1.2358 23 6 4.1183 -0.5154 -1.3457 24 1 -0.4851 0.8400 0.0004 25 1 3.9406 -0.2194 1.7500 26 1 5.3417 -1.0149 0.9936 27 1 5.7000 -3.0620 3.6245 28 1 5.1155 -0.4036 4.0130 29 1 3.7129 -1.2618 4.6944 30 1 6.0501 -2.9118 8.5925 31 1 8.0693 -1.4667 7.7401 32 1 5.0778 -2.5284 -1.0297 33 1 3.4440 -2.5959 -1.8829 34 1 3.4342 -0.0654 -2.0651 35 1 5.0677 0.0031 -1.2119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601377659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:41 Heat of formation + Delta-G solvation = 18.405956 kcal Electronic energy + Delta-G solvation = -20622.570140 eV Core-core repulsion = 17364.050365 eV Total energy + Delta-G solvation = -3258.519775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24109 -37.16951 -36.41199 -35.42106 -35.07932 -32.70635 -32.18337 -29.95174 -28.56918 -25.87219 -25.54606 -21.80471 -21.75301 -20.90963 -19.73399 -18.77295 -18.41765 -17.05814 -16.63442 -16.09207 -15.36915 -15.14580 -14.93798 -14.68679 -14.25181 -13.92962 -13.88733 -13.32954 -13.10412 -12.96406 -12.65058 -12.37386 -11.54979 -11.43506 -11.25168 -11.20744 -10.96979 -10.68858 -10.40735 -10.25802 -10.21124 -10.16146 -9.79275 -9.46172 -9.19326 -8.72432 -8.68347 -8.49662 -6.18407 -4.26168 0.82637 1.77230 2.83759 2.87491 3.19156 3.28155 3.30333 3.44295 4.10802 4.32118 4.41314 4.68407 4.77593 4.84787 4.97895 5.05396 5.13661 5.23487 5.38211 5.58865 5.65816 5.78114 5.85464 5.92286 5.99753 6.13973 6.39193 6.50270 6.61705 6.84020 7.03133 7.05057 7.07828 7.57019 7.88781 8.35180 8.87726 9.42250 10.93119 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.005183 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.045772 B = 5401.182453 C = 5726.866364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.510 4.510 8 H 0.088 0.912 9 C 0.001 3.999 10 C -0.578 4.578 11 S 2.615 3.385 12 O -0.932 6.932 13 O -0.964 6.964 14 N -1.128 6.128 15 C 0.202 3.798 16 C 0.201 3.799 17 N -0.469 5.469 18 C -0.028 4.028 19 C -0.053 4.053 20 N -0.562 5.562 21 H 0.420 0.580 22 C -0.177 4.177 23 C -0.185 4.185 24 H 0.268 0.732 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.412 0.588 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.144 1.505 10.172 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.182 1.182 7 C -0.547 4.547 8 H 0.106 0.894 9 C -0.002 4.002 10 C -0.710 4.710 11 S 2.710 3.290 12 O -0.922 6.922 13 O -0.954 6.954 14 N -0.885 5.885 15 C 0.074 3.926 16 C -0.064 4.064 17 N -0.189 5.189 18 C -0.177 4.177 19 C -0.188 4.188 20 N -0.166 5.166 21 H 0.258 0.742 22 C -0.214 4.214 23 C -0.224 4.224 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.245 0.755 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.189 0.811 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.407 0.599 10.111 18.438 hybrid contribution 2.299 2.087 -0.194 3.111 sum 17.707 2.686 9.917 20.472 Atomic orbital electron populations 1.69891 1.06409 1.27349 1.47939 1.24952 0.94515 0.98932 0.93200 0.86925 0.80611 0.83570 0.78726 1.20158 1.21664 1.18208 1.20348 0.85907 0.95583 1.52878 0.89439 1.18850 0.94934 1.02646 0.83725 1.30335 1.07213 1.20630 1.12794 1.05044 0.73763 0.76707 0.73492 1.93599 1.36322 1.86680 1.75564 1.93527 1.81423 1.45957 1.74526 1.56109 1.50815 1.40348 1.41269 1.19502 1.00829 0.89486 0.82803 1.23134 0.85102 0.99771 0.98393 1.70324 1.29760 1.17735 1.01044 1.22458 0.91018 1.03748 1.00508 1.22813 1.02858 1.04820 0.88281 1.43339 1.15600 1.40923 1.16762 0.74183 1.23029 1.01485 0.92823 1.04054 1.22987 1.01072 0.95282 1.03016 0.92244 0.85563 0.87461 0.75516 0.90304 0.86707 0.81112 0.80466 0.90014 0.88579 0.88892 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 20.39 24.96 -169.99 -4.24 16.15 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.39 5.68 56.52 0.32 -5.06 16 7 C -0.51 -13.98 8.77 -34.44 -0.30 -14.29 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 C 0.00 0.03 0.79 -155.66 -0.12 -0.10 16 10 C -0.58 -10.57 5.55 37.16 0.21 -10.37 16 11 S 2.61 49.52 5.19 -107.50 -0.56 48.96 16 12 O -0.93 -21.86 17.16 -57.54 -0.99 -22.84 16 13 O -0.96 -20.16 18.08 -57.54 -1.04 -21.20 16 14 N -1.13 -15.67 5.88 -11.65 -0.07 -15.74 16 15 C 0.20 2.51 6.75 -5.19 -0.04 2.47 16 16 C 0.20 2.43 7.55 -155.42 -1.17 1.26 16 17 N -0.47 -6.70 11.25 -10.82 -0.12 -6.82 16 18 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 19 C -0.05 -0.43 12.04 -16.56 -0.20 -0.63 16 20 N -0.56 -4.71 6.15 -10.23 -0.06 -4.77 16 21 H 0.42 2.11 8.96 -40.82 -0.37 1.74 16 22 C -0.18 -3.55 9.96 -26.69 -0.27 -3.81 16 23 C -0.18 -3.70 7.67 -26.70 -0.20 -3.91 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.13 2.22 6.53 -51.92 -0.34 1.88 16 26 H 0.11 1.52 8.09 -51.93 -0.42 1.10 16 27 H 0.41 5.04 8.61 -34.48 -0.30 4.74 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.11 1.61 7.69 -51.93 -0.40 1.21 16 30 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 34 H 0.09 1.95 7.34 -51.93 -0.38 1.57 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -37.01 311.22 -8.40 -45.41 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -4.38 Total: 9.26 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -2.41 Total: -27.50 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.52 Total: -52.93 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -2.03 Total: -44.04 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.24 Total: 16.15 kcal Atomic # 16 Polarization: 49.52 SS G_CDS: -0.56 Total: 48.96 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.01 -8.40 -45.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601377659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.820 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds