Wall clock time and date at job start Wed Apr 15 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48498 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47440 * 300.00497 * 3 2 1 6 6 H 1.48499 * 109.46589 * 60.00495 * 3 2 1 7 7 C 1.38812 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00269 * 359.97438 * 7 2 1 10 10 S 1.65597 * 120.00500 * 179.97438 * 9 7 2 11 11 O 1.42101 * 106.40012 * 311.46407 * 10 9 7 12 12 O 1.42092 * 106.40628 * 178.54157 * 10 9 7 13 13 C 1.76203 * 107.21493 * 64.99629 * 10 9 7 14 14 C 1.39868 * 126.04298 * 269.99867 * 13 10 9 15 15 N 1.30837 * 108.20148 * 180.02562 * 14 13 10 16 16 N 1.40081 * 108.20828 * 0.02562 * 15 14 13 17 17 C 1.46494 * 126.04084 * 180.26238 * 16 15 14 18 18 C 1.54274 * 110.03642 * 211.86132 * 17 16 15 19 19 C 1.54889 * 104.19674 * 217.10335 * 18 17 16 20 20 C 1.54895 * 102.74884 * 37.93811 * 19 18 17 21 21 C 1.53875 * 110.03652 * 94.68990 * 17 16 15 22 22 C 1.34954 * 107.92384 * 0.02562 * 16 15 14 23 23 H 0.96998 * 119.99709 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99604 * 0.02562 * 9 7 2 25 25 H 1.08001 * 125.89990 * 359.97438 * 14 13 10 26 26 H 1.09009 * 110.01603 * 333.30037 * 17 16 15 27 27 H 1.09000 * 110.48125 * 335.78279 * 18 17 16 28 28 H 1.09001 * 110.48858 * 98.42135 * 18 17 16 29 29 H 1.09000 * 110.75518 * 279.63129 * 19 18 17 30 30 H 1.08994 * 110.75267 * 156.25248 * 19 18 17 31 31 H 1.08994 * 110.48563 * 203.37600 * 20 19 18 32 32 H 1.09001 * 110.59740 * 80.79161 * 20 19 18 33 33 H 1.08990 * 110.03566 * 238.57500 * 21 17 16 34 34 H 1.09003 * 110.02920 * 0.02562 * 21 17 16 35 35 H 1.07999 * 126.12395 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 16 2.1534 -3.8223 -0.0018 11 8 3.1349 -3.7181 -1.0241 12 8 1.1739 -4.8511 0.0332 13 6 3.0314 -3.9190 1.5228 14 6 4.3288 -3.4515 1.7564 15 7 4.6351 -3.7020 3.0035 16 7 3.5409 -4.3383 3.6037 17 6 3.4619 -4.7867 4.9960 18 6 2.5769 -6.0464 5.0963 19 6 1.8117 -5.8678 6.4310 20 6 1.5176 -4.3473 6.4557 21 6 2.7884 -3.7065 5.8604 22 6 2.5703 -4.4605 2.6740 23 1 -0.4849 0.8401 0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 4.9678 -2.9681 1.0322 26 1 4.4609 -5.0002 5.3765 27 1 1.8796 -6.0902 4.2596 28 1 3.1937 -6.9446 5.1273 29 1 2.4376 -6.1539 7.2763 30 1 0.8844 -6.4406 6.4242 31 1 1.3613 -4.0055 7.4788 32 1 0.6488 -4.1147 5.8399 33 1 3.4601 -3.3962 6.6608 34 1 2.5199 -2.8487 5.2438 35 1 1.5993 -4.9093 2.8225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601962896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:45 Heat of formation + Delta-G solvation = -6.927748 kcal Electronic energy + Delta-G solvation = -20742.221891 eV Core-core repulsion = 17482.603564 eV Total energy + Delta-G solvation = -3259.618327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.06320 -38.06426 -36.00199 -34.66045 -34.47878 -32.12045 -30.81034 -30.05061 -29.02298 -27.49210 -24.40181 -22.46969 -21.48901 -20.68353 -19.63410 -18.44865 -18.00997 -17.47740 -16.36745 -16.13658 -15.46810 -14.56863 -14.50515 -14.40272 -14.19306 -14.05261 -13.67849 -13.39091 -12.66363 -12.14805 -11.93803 -11.82232 -11.46443 -11.43773 -11.31583 -11.24032 -11.04057 -11.03029 -10.91723 -10.82960 -10.78555 -10.42104 -10.25779 -9.93456 -9.85109 -9.18968 -8.68612 -8.16072 -6.33351 -3.80653 1.67307 2.01125 2.61142 2.85158 3.23261 3.29842 3.33844 4.07898 4.19439 4.23750 4.55811 4.63542 4.84263 4.89475 4.96646 5.00141 5.09668 5.13135 5.24210 5.26143 5.32653 5.49095 5.55811 5.61237 5.76454 5.78737 5.95059 5.97058 6.01094 6.26220 6.84256 7.14979 7.16485 7.61941 7.84324 8.78653 8.94199 9.35962 10.83881 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.005817 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.859658 B = 4812.401052 C = 5428.273659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.029 3.971 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.281 4.281 8 H 0.102 0.898 9 N -0.960 5.960 10 S 2.670 3.330 11 O -0.974 6.974 12 O -1.007 7.007 13 C -0.792 4.792 14 C 0.133 3.867 15 N -0.308 5.308 16 N -0.364 5.364 17 C 0.153 3.847 18 C -0.140 4.140 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.139 4.139 22 C 0.162 3.838 23 H 0.270 0.730 24 H 0.410 0.590 25 H 0.192 0.808 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -8.193 12.898 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.418 4.418 8 H 0.120 0.880 9 N -0.713 5.713 10 S 2.757 3.243 11 O -0.964 6.964 12 O -0.997 6.997 13 C -0.885 4.885 14 C -0.055 4.055 15 N -0.127 5.127 16 N -0.143 5.143 17 C 0.051 3.949 18 C -0.179 4.179 19 C -0.158 4.158 20 C -0.164 4.164 21 C -0.177 4.177 22 C 0.010 3.990 23 H 0.080 0.920 24 H 0.245 0.755 25 H 0.209 0.791 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.157 -8.757 13.377 16.520 hybrid contribution -0.418 1.187 0.221 1.277 sum 3.739 -7.570 13.598 16.006 Atomic orbital electron populations 1.69699 1.05828 1.27673 1.50147 1.25134 0.95585 0.99126 0.97762 0.85982 0.79729 0.81935 0.77776 1.19174 1.20628 1.20949 1.19232 0.91994 0.82964 1.47607 0.88044 1.51463 1.16825 1.19102 1.83921 1.03660 0.72660 0.72852 0.75079 1.93469 1.61685 1.86984 1.54292 1.93411 1.60270 1.57743 1.88230 1.32546 1.10146 1.22087 1.23746 1.23467 0.93689 0.95162 0.93226 1.77285 1.08469 1.17598 1.09311 1.49276 1.11066 1.44672 1.09263 1.22046 1.01563 0.94206 0.77127 1.22883 0.98900 0.96459 0.99649 1.22467 1.00364 0.96544 0.96458 1.22400 0.97684 0.94960 1.01358 1.22638 0.97439 0.98315 0.99344 1.22190 0.94584 0.94791 0.87388 0.92030 0.75478 0.79086 0.87799 0.89871 0.90132 0.90936 0.90562 0.90991 0.90914 0.90359 0.90280 0.80182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 13.06 55.49 0.72 -23.39 16 2 C 0.03 0.76 5.50 -17.43 -0.10 0.66 16 3 Si 0.92 20.26 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.28 -7.21 9.63 -15.06 -0.15 -7.36 16 8 H 0.10 2.49 7.82 -52.49 -0.41 2.08 16 9 N -0.96 -23.19 5.75 31.50 0.18 -23.01 16 10 S 2.67 58.76 5.84 -107.50 -0.63 58.13 16 11 O -0.97 -23.69 17.57 -57.17 -1.00 -24.70 16 12 O -1.01 -23.09 17.84 -57.17 -1.02 -24.11 16 13 C -0.79 -15.51 6.09 -40.01 -0.24 -15.76 16 14 C 0.13 2.53 11.82 -17.37 -0.21 2.32 16 15 N -0.31 -5.61 12.58 30.62 0.39 -5.22 16 16 N -0.36 -5.78 3.45 -53.77 -0.19 -5.97 16 17 C 0.15 1.77 4.01 -66.81 -0.27 1.50 16 18 C -0.14 -1.30 6.37 -25.07 -0.16 -1.46 16 19 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 20 C -0.13 -1.09 6.83 -25.07 -0.17 -1.26 16 21 C -0.14 -1.48 6.60 -25.61 -0.17 -1.65 16 22 C 0.16 2.76 10.18 -17.22 -0.18 2.58 16 23 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.41 10.05 8.02 -34.47 -0.28 9.77 16 25 H 0.19 3.28 8.06 -52.49 -0.42 2.86 16 26 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 27 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 35 H 0.18 2.60 6.87 -52.49 -0.36 2.23 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -32.38 310.81 -7.98 -40.35 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.28 Total: 9.47 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -1.80 Total: -21.48 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 1.11 Total: -57.58 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.02 Total: -48.81 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 58.76 SS G_CDS: -0.63 Total: 58.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.38 -7.98 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601962896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.424 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds