Wall clock time and date at job start Wed Apr 15 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48498 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47440 * 300.00497 * 3 2 1 6 6 H 1.48499 * 109.46589 * 60.00495 * 3 2 1 7 7 C 1.38812 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00269 * 359.97438 * 7 2 1 10 10 S 1.65597 * 120.00500 * 179.97438 * 9 7 2 11 11 O 1.42101 * 106.40012 * 311.46407 * 10 9 7 12 12 O 1.42092 * 106.40628 * 178.54157 * 10 9 7 13 13 C 1.76203 * 107.21493 * 64.99629 * 10 9 7 14 14 C 1.39868 * 126.04298 * 269.99867 * 13 10 9 15 15 N 1.30837 * 108.20148 * 180.02562 * 14 13 10 16 16 N 1.40081 * 108.20828 * 0.02562 * 15 14 13 17 17 C 1.46494 * 126.04084 * 180.26238 * 16 15 14 18 18 C 1.54274 * 110.03642 * 211.86132 * 17 16 15 19 19 C 1.54889 * 104.19674 * 217.10335 * 18 17 16 20 20 C 1.54895 * 102.74884 * 37.93811 * 19 18 17 21 21 C 1.53875 * 110.03652 * 94.68990 * 17 16 15 22 22 C 1.34954 * 107.92384 * 0.02562 * 16 15 14 23 23 H 0.96998 * 119.99709 * 359.97438 * 1 2 3 24 24 H 0.97003 * 119.99604 * 0.02562 * 9 7 2 25 25 H 1.08001 * 125.89990 * 359.97438 * 14 13 10 26 26 H 1.09009 * 110.01603 * 333.30037 * 17 16 15 27 27 H 1.09000 * 110.48125 * 335.78279 * 18 17 16 28 28 H 1.09001 * 110.48858 * 98.42135 * 18 17 16 29 29 H 1.09000 * 110.75518 * 279.63129 * 19 18 17 30 30 H 1.08994 * 110.75267 * 156.25248 * 19 18 17 31 31 H 1.08994 * 110.48563 * 203.37600 * 20 19 18 32 32 H 1.09001 * 110.59740 * 80.79161 * 20 19 18 33 33 H 1.08990 * 110.03566 * 238.57500 * 21 17 16 34 34 H 1.09003 * 110.02920 * 0.02562 * 21 17 16 35 35 H 1.07999 * 126.12395 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 16 2.1534 -3.8223 -0.0018 11 8 3.1349 -3.7181 -1.0241 12 8 1.1739 -4.8511 0.0332 13 6 3.0314 -3.9190 1.5228 14 6 4.3288 -3.4515 1.7564 15 7 4.6351 -3.7020 3.0035 16 7 3.5409 -4.3383 3.6037 17 6 3.4619 -4.7867 4.9960 18 6 2.5769 -6.0464 5.0963 19 6 1.8117 -5.8678 6.4310 20 6 1.5176 -4.3473 6.4557 21 6 2.7884 -3.7065 5.8604 22 6 2.5703 -4.4605 2.6740 23 1 -0.4849 0.8401 0.0004 24 1 0.3555 -2.3880 -0.0005 25 1 4.9678 -2.9681 1.0322 26 1 4.4609 -5.0002 5.3765 27 1 1.8796 -6.0902 4.2596 28 1 3.1937 -6.9446 5.1273 29 1 2.4376 -6.1539 7.2763 30 1 0.8844 -6.4406 6.4242 31 1 1.3613 -4.0055 7.4788 32 1 0.6488 -4.1147 5.8399 33 1 3.4601 -3.3962 6.6608 34 1 2.5199 -2.8487 5.2438 35 1 1.5993 -4.9093 2.8225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601962896.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:43 Heat of formation + Delta-G solvation = -30.383517 kcal Electronic energy + Delta-G solvation = -20743.239010 eV Core-core repulsion = 17482.603564 eV Total energy + Delta-G solvation = -3260.635445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.41844 -38.94128 -37.92225 -36.59245 -36.35481 -33.28282 -32.72042 -31.48685 -29.79928 -28.51631 -26.34472 -23.70313 -22.80971 -21.54492 -20.75937 -20.13237 -19.87716 -18.96017 -18.13573 -17.00891 -16.83806 -16.43976 -16.12016 -15.73199 -15.61721 -15.24087 -15.01445 -14.52362 -13.97360 -13.76276 -13.12760 -13.06953 -12.95947 -12.93141 -12.83566 -12.75636 -12.64413 -12.22519 -12.17581 -12.08245 -12.03868 -11.80192 -11.78619 -11.56040 -11.51831 -10.56876 -10.19886 -10.03520 -8.23744 -5.80981 -0.10043 0.59178 1.30228 1.39957 1.48155 1.50512 1.61567 2.39190 2.82522 3.06157 3.19242 3.34244 3.46982 3.53397 3.73954 3.79728 3.99427 4.17681 4.29795 4.34993 4.39347 4.56480 4.61261 4.67016 4.79815 4.95354 5.02558 5.14389 5.19200 5.19562 5.37005 5.37274 5.71362 5.89647 6.41071 6.85035 7.05560 7.42607 8.95591 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.005817 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.859658 B = 4812.401052 C = 5428.273659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.020 4.020 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.983 5.983 10 S 2.720 3.280 11 O -1.000 7.000 12 O -1.012 7.012 13 C -0.815 4.815 14 C 0.122 3.878 15 N -0.317 5.317 16 N -0.351 5.351 17 C 0.139 3.861 18 C -0.140 4.140 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.137 4.137 22 C 0.171 3.829 23 H 0.268 0.732 24 H 0.405 0.595 25 H 0.202 0.798 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -9.595 15.096 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.220 4.220 3 Si 0.800 3.200 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.439 4.439 8 H 0.123 0.877 9 N -0.736 5.736 10 S 2.810 3.190 11 O -0.990 6.990 12 O -1.002 7.002 13 C -0.914 4.914 14 C -0.066 4.066 15 N -0.136 5.136 16 N -0.129 5.129 17 C 0.039 3.961 18 C -0.178 4.178 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.176 4.176 22 C 0.018 3.982 23 H 0.077 0.923 24 H 0.240 0.760 25 H 0.218 0.782 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.965 -10.094 15.554 19.195 hybrid contribution -0.567 1.326 -0.324 1.478 sum 4.398 -8.767 15.230 18.115 Atomic orbital electron populations 1.69796 1.06987 1.28053 1.53061 1.25853 0.96338 1.01903 0.97941 0.85121 0.78998 0.78363 0.77523 1.18211 1.20672 1.20782 1.19418 0.92241 0.83676 1.48529 0.87730 1.51208 1.16531 1.19140 1.86756 1.00920 0.72040 0.71611 0.74463 1.93445 1.62526 1.87139 1.55939 1.93417 1.60820 1.57385 1.88545 1.31828 1.10856 1.25614 1.23060 1.23693 0.93606 0.95413 0.93882 1.77244 1.09591 1.17860 1.08888 1.49630 1.09903 1.42829 1.10500 1.22604 1.03127 0.95651 0.74737 1.22951 0.98677 0.95630 1.00548 1.22467 1.00998 0.95448 0.95885 1.22414 0.96054 0.95934 1.01884 1.22637 0.98812 0.96989 0.99135 1.22567 0.95545 0.93391 0.86744 0.92267 0.76009 0.78175 0.86568 0.90611 0.88614 0.89064 0.89309 0.89347 0.91998 0.88784 0.93388 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.20 13.06 21.65 0.28 -51.92 16 2 C -0.02 -1.08 5.50 84.86 0.47 -0.61 16 3 Si 0.97 42.22 29.55 68.60 2.03 44.24 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.31 -15.98 9.63 84.03 0.81 -15.17 16 8 H 0.11 5.22 7.82 -2.91 -0.02 5.20 16 9 N -0.98 -48.39 5.75 -54.27 -0.31 -48.71 16 10 S 2.72 119.05 5.84 -56.49 -0.33 118.72 16 11 O -1.00 -48.58 17.57 -128.00 -2.25 -50.83 16 12 O -1.01 -45.44 17.84 -128.00 -2.28 -47.72 16 13 C -0.81 -31.14 6.09 21.99 0.13 -31.01 16 14 C 0.12 4.54 11.82 85.24 1.01 5.55 16 15 N -0.32 -11.06 12.58 -57.02 -0.72 -11.78 16 16 N -0.35 -10.45 3.45 -324.04 -1.12 -11.56 16 17 C 0.14 2.84 4.01 45.72 0.18 3.03 16 18 C -0.14 -2.11 6.37 31.67 0.20 -1.90 16 19 C -0.11 -1.20 6.91 31.89 0.22 -0.98 16 20 C -0.13 -1.80 6.83 31.67 0.22 -1.59 16 21 C -0.14 -2.62 6.60 31.32 0.21 -2.42 16 22 C 0.17 5.54 10.18 83.54 0.85 6.39 16 23 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 24 H 0.41 20.49 8.02 -96.74 -0.78 19.72 16 25 H 0.20 6.79 8.06 -2.91 -0.02 6.77 16 26 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.08 1.28 5.93 -2.39 -0.01 1.26 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16 35 H 0.21 5.45 6.87 -2.91 -0.02 5.43 16 Total: -1.00 -69.50 310.81 -0.07 -69.56 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.34 Total: 28.70 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 4.30 Total: -38.70 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -1.86 Total: -123.97 kcal Atomic # 8 Polarization: -94.02 SS G_CDS: -4.53 Total: -98.55 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 119.05 SS G_CDS: -0.33 Total: 118.72 kcal Total: -69.50 -0.07 -69.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601962896.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.177 kcal (2) G-P(sol) polarization free energy of solvation -69.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds