Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48500 * 109.47257 * 239.99457 * 3 2 1 5 5 H 1.48502 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47019 * 120.00068 * 3 2 1 7 7 C 1.38947 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00033 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00058 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99843 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46781 * 180.02562 * 12 10 9 14 14 C 1.34758 * 116.99661 * 180.02562 * 13 12 10 15 15 O 1.21524 * 120.00289 * 359.97438 * 14 13 12 16 16 C 1.47289 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.41343 * 126.42670 * 359.97438 * 16 14 13 18 18 N 1.30431 * 108.01316 * 179.77418 * 17 16 14 19 19 N 1.39924 * 108.91754 * 0.38556 * 18 17 16 20 20 C 1.46504 * 125.74252 * 179.87651 * 19 18 17 21 21 C 1.53006 * 109.46883 * 304.68428 * 20 19 18 22 22 F 1.39895 * 109.46931 * 180.02562 * 21 20 19 23 23 C 1.34225 * 108.51387 * 359.60339 * 19 18 17 24 24 H 0.97002 * 119.99664 * 0.02562 * 1 2 3 25 25 H 0.97009 * 119.99175 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.46867 * 59.99850 * 12 10 9 27 27 H 1.08997 * 109.47038 * 299.99810 * 12 10 9 28 28 H 1.07998 * 125.99449 * 359.97438 * 17 16 14 29 29 H 1.09001 * 109.46891 * 184.68862 * 20 19 18 30 30 H 1.08993 * 109.47378 * 64.68234 * 20 19 18 31 31 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 32 32 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 33 33 H 1.08003 * 126.29302 * 180.22975 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0011 13 8 2.1871 -5.9666 0.0016 14 6 1.6719 -7.2118 0.0016 15 8 0.4672 -7.3710 0.0017 16 6 2.5691 -8.3799 0.0016 17 6 3.9823 -8.3528 0.0009 18 7 4.4093 -9.5852 0.0060 19 7 3.3072 -10.4473 0.0011 20 6 3.3657 -11.9111 0.0018 21 6 4.2119 -12.3883 -1.1804 22 9 4.2672 -13.7861 -1.1800 23 6 2.1873 -9.7073 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6166 -4.9208 -0.8886 27 1 0.6173 -4.9205 0.8914 28 1 4.6001 -7.4670 0.0001 29 1 2.3572 -12.3151 -0.0868 30 1 3.8149 -12.2564 0.9329 31 1 3.7626 -12.0429 -2.1115 32 1 5.2203 -11.9842 -1.0918 33 1 1.1741 -10.0812 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808574061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -93.239760 kcal Electronic energy + Delta-G solvation = -20913.353672 eV Core-core repulsion = 17083.779400 eV Total energy + Delta-G solvation = -3829.574273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.27017 -41.70287 -39.83936 -38.04533 -35.94843 -34.68492 -33.97085 -31.36424 -30.87608 -29.86268 -28.16518 -24.89282 -24.25960 -23.23020 -21.14936 -20.36324 -19.53157 -18.34285 -18.03481 -17.02850 -16.86095 -16.43815 -16.26325 -15.96745 -15.66938 -15.26419 -14.87247 -14.48755 -14.30486 -13.98655 -13.88177 -13.46477 -13.08328 -12.93263 -12.28275 -12.11948 -11.98780 -11.60131 -11.58920 -11.22775 -11.09553 -10.47505 -10.34920 -10.34800 -10.25691 -9.95743 -9.57316 -9.08678 -8.49230 -8.06017 -6.47878 -3.89837 1.10438 1.76980 1.89386 2.84140 3.16637 3.19212 3.24201 3.29215 3.63918 3.77084 3.97335 4.14150 4.30375 4.38874 4.45778 4.61264 4.79019 4.80993 5.06061 5.09625 5.17486 5.22478 5.43568 5.67683 5.74515 6.08921 6.17604 6.33977 6.67826 7.18484 7.49601 7.91457 8.02344 8.51096 9.09234 9.41883 9.91940 10.69331 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.053277 B = 0.002498 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.427508 B =11206.091404 C =11617.105174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.541 3.459 15 O -0.525 6.525 16 C -0.270 4.270 17 C 0.115 3.885 18 N -0.302 5.302 19 N -0.366 5.366 20 C 0.103 3.897 21 C 0.052 3.948 22 F -0.207 7.207 23 C 0.138 3.862 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.205 0.795 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.445 -22.238 -0.710 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.014 4.014 13 O -0.235 6.235 14 C 0.385 3.615 15 O -0.416 6.416 16 C -0.283 4.283 17 C -0.073 4.073 18 N -0.121 5.121 19 N -0.145 5.145 20 C -0.019 4.019 21 C -0.004 4.004 22 F -0.188 7.188 23 C -0.013 4.013 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.222 0.778 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.822 -23.035 -0.705 23.360 hybrid contribution -1.233 1.342 0.037 1.823 sum 2.590 -21.692 -0.668 21.857 Atomic orbital electron populations 1.69609 1.05984 1.28545 1.49707 1.25308 0.95690 0.99852 0.96943 0.85858 0.78739 0.80101 0.79182 1.19766 1.20911 1.19770 1.19674 0.93446 0.81778 1.48218 0.87668 1.41699 1.09375 1.04082 1.63923 1.19330 0.88339 0.84079 0.85849 1.90558 1.13413 1.86813 1.55200 1.22732 0.90801 0.84369 1.03537 1.86580 1.39845 1.13742 1.83308 1.19968 0.86156 0.82930 0.72410 1.90822 1.15902 1.87040 1.47875 1.19355 0.93574 0.91010 1.24361 1.24450 0.93478 0.95681 0.93705 1.77257 1.08506 1.00492 1.25808 1.48286 1.04282 1.06356 1.55578 1.22325 1.03857 0.74456 1.01257 1.22164 1.03144 0.75979 0.99064 1.92805 1.97909 1.30373 1.97723 1.22956 0.93127 0.90333 0.94860 0.91608 0.77146 0.89507 0.89513 0.77793 0.86964 0.87912 0.89846 0.88797 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.94 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.52 7.86 -10.99 -0.09 10.43 16 11 O -0.58 -15.82 16.08 -14.12 -0.23 -16.05 16 12 C 0.06 1.20 5.95 36.01 0.21 1.41 16 13 O -0.32 -5.95 9.60 -47.33 -0.45 -6.40 16 14 C 0.54 8.68 7.95 34.41 0.27 8.95 16 15 O -0.53 -9.12 16.69 -19.28 -0.32 -9.44 16 16 C -0.27 -3.46 6.13 -105.08 -0.64 -4.10 16 17 C 0.11 1.40 11.87 -16.97 -0.20 1.20 16 18 N -0.30 -3.39 12.33 30.87 0.38 -3.01 16 19 N -0.37 -3.17 3.65 -60.79 -0.22 -3.40 16 20 C 0.10 0.52 6.94 -4.04 -0.03 0.49 16 21 C 0.05 0.29 7.73 37.16 0.29 0.57 16 22 F -0.21 -1.49 17.36 2.25 0.04 -1.45 16 23 C 0.14 1.30 11.25 -16.55 -0.19 1.11 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.21 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.11 0.28 8.06 -51.93 -0.42 -0.14 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -33.94 314.03 -4.25 -38.19 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.21 Total: 6.32 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -0.61 Total: 12.16 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.83 Total: -43.72 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.00 Total: -31.89 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.94 -4.25 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808574061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.052 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds