Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48500 * 109.47257 * 239.99457 * 3 2 1 5 5 H 1.48502 * 109.47258 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47019 * 120.00068 * 3 2 1 7 7 C 1.38947 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00033 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00214 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00058 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99843 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46781 * 180.02562 * 12 10 9 14 14 C 1.34758 * 116.99661 * 180.02562 * 13 12 10 15 15 O 1.21524 * 120.00289 * 359.97438 * 14 13 12 16 16 C 1.47289 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.41343 * 126.42670 * 359.97438 * 16 14 13 18 18 N 1.30431 * 108.01316 * 179.77418 * 17 16 14 19 19 N 1.39924 * 108.91754 * 0.38556 * 18 17 16 20 20 C 1.46504 * 125.74252 * 179.87651 * 19 18 17 21 21 C 1.53006 * 109.46883 * 304.68428 * 20 19 18 22 22 F 1.39895 * 109.46931 * 180.02562 * 21 20 19 23 23 C 1.34225 * 108.51387 * 359.60339 * 19 18 17 24 24 H 0.97002 * 119.99664 * 0.02562 * 1 2 3 25 25 H 0.97009 * 119.99175 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.46867 * 59.99850 * 12 10 9 27 27 H 1.08997 * 109.47038 * 299.99810 * 12 10 9 28 28 H 1.07998 * 125.99449 * 359.97438 * 17 16 14 29 29 H 1.09001 * 109.46891 * 184.68862 * 20 19 18 30 30 H 1.08993 * 109.47378 * 64.68234 * 20 19 18 31 31 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 32 32 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 33 33 H 1.08003 * 126.29302 * 180.22975 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0011 13 8 2.1871 -5.9666 0.0016 14 6 1.6719 -7.2118 0.0016 15 8 0.4672 -7.3710 0.0017 16 6 2.5691 -8.3799 0.0016 17 6 3.9823 -8.3528 0.0009 18 7 4.4093 -9.5852 0.0060 19 7 3.3072 -10.4473 0.0011 20 6 3.3657 -11.9111 0.0018 21 6 4.2119 -12.3883 -1.1804 22 9 4.2672 -13.7861 -1.1800 23 6 2.1873 -9.7073 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 0.3532 -2.3906 0.0005 26 1 0.6166 -4.9208 -0.8886 27 1 0.6173 -4.9205 0.8914 28 1 4.6001 -7.4670 0.0001 29 1 2.3572 -12.3151 -0.0868 30 1 3.8149 -12.2564 0.9329 31 1 3.7626 -12.0429 -2.1115 32 1 5.2203 -11.9842 -1.0918 33 1 1.1741 -10.0812 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808574061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -116.021456 kcal Electronic energy + Delta-G solvation = -20914.341561 eV Core-core repulsion = 17083.779400 eV Total energy + Delta-G solvation = -3830.562161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.096 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.77654 -42.55317 -41.18170 -39.90257 -37.34841 -35.99773 -35.31999 -33.39008 -31.75639 -30.73815 -29.60465 -26.65969 -25.05111 -24.25112 -21.91078 -21.45655 -21.34164 -20.03803 -19.29683 -17.96783 -17.80615 -17.67983 -17.42352 -17.10793 -16.64570 -16.41977 -16.07838 -15.79556 -15.71433 -15.38050 -14.95882 -14.64414 -14.13931 -13.90379 -13.71618 -13.58494 -13.52087 -12.91479 -12.66591 -12.46554 -12.33294 -12.11504 -11.87990 -11.79339 -11.54355 -11.46757 -10.72550 -10.47642 -10.09389 -9.95947 -8.50074 -6.00499 0.23666 0.92161 1.05359 1.39553 1.43318 1.52827 1.64172 1.90037 2.10417 2.32295 3.04507 3.15641 3.19929 3.57366 3.66590 3.74560 3.89734 3.98618 4.07215 4.18411 4.21538 4.22073 4.26678 4.49981 4.60018 4.76752 5.25230 5.37548 5.40309 5.67756 5.91578 6.33570 6.49288 6.74969 7.05361 7.42914 7.96578 8.66749 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.053277 B = 0.002498 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.427508 B =11206.091404 C =11617.105174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.559 5.559 10 C 0.438 3.562 11 O -0.617 6.617 12 C 0.074 3.926 13 O -0.340 6.340 14 C 0.543 3.457 15 O -0.542 6.542 16 C -0.304 4.304 17 C 0.106 3.894 18 N -0.315 5.315 19 N -0.355 5.355 20 C 0.098 3.902 21 C 0.055 3.945 22 F -0.215 7.215 23 C 0.166 3.834 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.200 0.800 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 -23.535 -0.669 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.102 0.898 9 N -0.197 5.197 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.003 4.003 13 O -0.255 6.255 14 C 0.390 3.610 15 O -0.434 6.434 16 C -0.317 4.317 17 C -0.081 4.081 18 N -0.135 5.135 19 N -0.133 5.133 20 C -0.022 4.022 21 C -0.001 4.001 22 F -0.197 7.197 23 C 0.013 3.987 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.217 0.783 29 H 0.166 0.834 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.017 -24.369 -0.663 24.564 hybrid contribution -0.974 1.581 0.021 1.857 sum 2.043 -22.788 -0.642 22.888 Atomic orbital electron populations 1.69669 1.06920 1.29736 1.49245 1.26121 0.96599 1.02573 0.95743 0.84919 0.77731 0.76160 0.79119 1.19499 1.19435 1.19523 1.19682 0.92941 0.83401 1.50632 0.89766 1.41737 1.09571 1.04174 1.64173 1.20128 0.88095 0.85397 0.83956 1.90523 1.15447 1.87718 1.56656 1.22494 0.90091 0.82293 1.05414 1.86578 1.40287 1.14683 1.83976 1.20382 0.86493 0.82521 0.71631 1.90800 1.16518 1.86970 1.49098 1.19333 0.93363 0.91225 1.27811 1.24434 0.93508 0.96100 0.94107 1.77225 1.09778 1.00390 1.26060 1.48568 1.03477 1.07503 1.53705 1.22689 1.06051 0.72047 1.01453 1.22135 1.02936 0.75324 0.99691 1.92790 1.97935 1.31139 1.97786 1.23417 0.94486 0.88975 0.91789 0.90999 0.76537 0.87495 0.87530 0.78333 0.83433 0.86866 0.89178 0.89695 0.75483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.64 13.05 21.66 0.28 -48.35 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 42.07 29.55 68.60 2.03 44.10 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 8 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.68 5.29 -306.98 -1.62 -30.30 16 10 C 0.44 21.37 7.86 87.66 0.69 22.06 16 11 O -0.62 -35.00 16.08 15.72 0.25 -34.75 16 12 C 0.07 2.80 5.95 71.24 0.42 3.23 16 13 O -0.34 -12.69 9.60 -50.30 -0.48 -13.17 16 14 C 0.54 17.08 7.95 70.20 0.56 17.64 16 15 O -0.54 -18.06 16.69 19.76 0.33 -17.73 16 16 C -0.30 -7.48 6.13 -20.16 -0.12 -7.60 16 17 C 0.11 2.57 11.87 85.66 1.02 3.59 16 18 N -0.32 -6.74 12.33 -56.25 -0.69 -7.44 16 19 N -0.35 -5.22 3.65 -346.24 -1.26 -6.48 16 20 C 0.10 0.66 6.94 86.38 0.60 1.26 16 21 C 0.05 0.48 7.73 71.98 0.56 1.04 16 22 F -0.22 -2.67 17.36 44.97 0.78 -1.89 16 23 C 0.17 2.65 11.25 84.30 0.95 3.60 16 24 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.40 19.30 7.90 -92.70 -0.73 18.57 16 26 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.20 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.15 0.03 8.06 -2.39 -0.02 0.01 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -73.76 314.03 6.00 -67.77 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.43 Total: 21.63 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 5.95 Total: 26.63 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -3.30 Total: -92.58 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: 0.10 Total: -65.65 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -73.76 6.00 -67.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808574061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.256 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds