Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48494 * 109.46931 * 269.99828 * 3 2 1 5 5 H 1.48497 * 109.46927 * 29.99805 * 3 2 1 6 6 H 1.48498 * 109.47176 * 149.99869 * 3 2 1 7 7 C 1.37879 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00064 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46905 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46901 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47272 * 179.97438 * 11 10 9 13 13 C 1.38994 * 120.00339 * 179.97438 * 12 11 10 14 14 C 1.39139 * 119.70410 * 0.02562 * 13 12 11 15 15 C 1.38305 * 119.09622 * 179.71969 * 14 13 12 16 16 S 1.76197 * 120.74591 * 180.22995 * 15 14 13 17 17 N 1.65598 * 107.22063 * 90.00303 * 16 15 14 18 18 O 1.42096 * 106.40178 * 203.54364 * 16 15 14 19 19 O 1.42103 * 106.40234 * 336.46210 * 16 15 14 20 20 C 1.38879 * 118.50479 * 0.25546 * 15 14 13 21 21 C 1.38022 * 119.33137 * 359.97438 * 20 15 14 22 22 N 1.31967 * 120.85662 * 0.02562 * 21 20 15 23 23 H 0.96998 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.46876 * 60.00403 * 9 7 2 25 25 H 1.08999 * 109.47381 * 300.00025 * 9 7 2 26 26 H 1.08995 * 109.47334 * 60.00304 * 10 9 7 27 27 H 1.09002 * 109.47307 * 299.99988 * 10 9 7 28 28 H 1.09000 * 109.47450 * 59.99775 * 11 10 9 29 29 H 1.09002 * 109.46994 * 300.00013 * 11 10 9 30 30 H 0.97008 * 119.99846 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.45446 * 0.02562 * 14 13 12 32 32 H 0.96991 * 120.00413 * 149.99345 * 17 16 15 33 33 H 0.97009 * 119.99564 * 330.00562 * 17 16 15 34 34 H 1.08000 * 120.33669 * 179.97438 * 20 15 14 35 35 H 1.07997 * 119.57464 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6365 0.0022 12 7 6.0400 -4.0177 0.0027 13 6 7.4065 -4.2717 0.0033 14 6 8.3052 -3.2095 0.0040 15 6 9.6622 -3.4767 0.0105 16 16 10.8385 -2.1649 0.0176 17 7 11.1580 -1.8015 1.6013 18 8 12.0394 -2.6999 -0.5214 19 8 10.1786 -1.0312 -0.5290 20 6 10.0767 -4.8022 0.0107 21 6 9.1302 -5.8066 0.0050 22 7 7.8415 -5.5223 -0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8753 -0.6804 -0.8888 26 1 3.6586 -3.1502 -0.8892 27 1 3.6579 -3.1506 0.8907 28 1 5.9142 -2.1230 0.8927 29 1 5.9156 -2.1223 -0.8873 30 1 5.4096 -4.7551 0.0019 31 1 7.9480 -2.1903 0.0044 32 1 12.0292 -1.4581 1.8539 33 1 10.4738 -1.9324 2.2765 34 1 11.1292 -5.0446 0.0152 35 1 9.4482 -6.8387 0.0047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -43.412909 kcal Electronic energy + Delta-G solvation = -19594.252204 eV Core-core repulsion = 16333.051762 eV Total energy + Delta-G solvation = -3261.200442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47457 -37.46570 -36.63946 -36.13725 -33.83381 -33.57100 -32.96419 -31.83468 -29.76000 -26.96223 -24.61703 -23.57235 -22.08558 -20.54812 -19.86226 -18.77861 -17.75971 -17.38831 -16.93896 -16.68540 -16.06198 -15.68131 -15.33631 -15.17339 -14.50271 -14.37765 -14.22255 -13.98753 -12.75148 -12.52223 -12.46567 -12.44084 -12.38023 -12.20095 -12.00670 -11.78116 -11.17434 -11.09882 -10.91165 -10.76562 -10.27408 -10.07802 -9.89164 -9.80601 -9.73141 -9.29657 -8.60532 -7.88197 -6.10832 -4.10331 0.01601 0.47123 1.04461 2.78871 3.02835 3.24156 3.27616 3.35486 3.37669 3.58317 4.08546 4.39570 4.46750 4.76966 4.82692 4.94940 5.21542 5.22632 5.31640 5.42267 5.42588 5.60077 5.60209 5.78781 6.13063 6.29505 6.36435 6.64624 6.66282 6.84642 7.13438 7.26780 7.44958 7.69942 7.89351 8.44954 8.92820 9.50731 11.02380 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.003623 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.176776 B = 7726.298044 C = 8853.984166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.112 4.112 11 C 0.113 3.887 12 N -0.713 5.713 13 C 0.397 3.603 14 C -0.142 4.142 15 C -0.586 4.586 16 S 2.705 3.295 17 N -1.246 6.246 18 O -0.960 6.960 19 O -0.953 6.953 20 C -0.152 4.152 21 C 0.141 3.859 22 N -0.513 5.513 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.408 0.592 31 H 0.152 0.848 32 H 0.421 0.579 33 H 0.419 0.581 34 H 0.148 0.852 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.030 -7.943 3.970 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.150 4.150 11 C -0.010 4.010 12 N -0.343 5.343 13 C 0.159 3.841 14 C -0.169 4.169 15 C -0.681 4.681 16 S 2.791 3.209 17 N -0.921 5.921 18 O -0.949 6.949 19 O -0.942 6.942 20 C -0.176 4.176 21 C -0.019 4.019 22 N -0.231 5.231 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.245 0.755 31 H 0.170 0.830 32 H 0.252 0.748 33 H 0.246 0.754 34 H 0.166 0.834 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.486 -7.907 3.020 24.965 hybrid contribution 0.201 0.765 0.670 1.036 sum 23.687 -7.143 3.690 25.014 Atomic orbital electron populations 1.69909 1.06347 1.27032 1.50750 1.25032 0.94752 0.99256 0.94396 0.86773 0.80327 0.83500 0.78659 1.20168 1.21324 1.18924 1.21072 0.89220 0.94569 1.51376 0.90997 1.19510 0.97465 0.91168 0.96711 1.21686 0.89899 1.01260 1.02177 1.21879 0.97379 0.80342 1.01435 1.44924 1.01855 1.09498 1.78012 1.18511 0.86365 0.88810 0.90447 1.21260 0.91335 1.00789 1.03544 1.31000 1.10525 1.14785 1.11753 1.01614 0.73238 0.73620 0.72400 1.53072 1.25670 1.84582 1.28765 1.93600 1.44795 1.79876 1.76644 1.93653 1.76138 1.48380 1.75999 1.21495 1.01737 0.91308 1.03088 1.22561 0.86788 0.99835 0.92707 1.67253 1.18429 1.20214 1.17180 0.92625 0.96256 0.96626 0.91824 0.91838 0.91784 0.91597 0.75529 0.83010 0.74833 0.75420 0.83429 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.52 -14.48 9.66 -34.44 -0.33 -14.81 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 11 C 0.11 1.63 4.89 -4.04 -0.02 1.61 16 12 N -0.71 -9.53 5.73 -60.42 -0.35 -9.87 16 13 C 0.40 5.28 7.65 -155.03 -1.19 4.10 16 14 C -0.14 -1.72 8.82 -39.22 -0.35 -2.07 16 15 C -0.59 -6.07 6.01 -39.32 -0.24 -6.30 16 16 S 2.70 25.16 6.30 -107.50 -0.68 24.48 16 17 N -1.25 -6.56 9.52 60.35 0.57 -5.98 16 18 O -0.96 -11.09 17.38 -57.17 -0.99 -12.08 16 19 O -0.95 -12.49 17.38 -57.17 -0.99 -13.48 16 20 C -0.15 -1.43 9.60 -39.42 -0.38 -1.81 16 21 C 0.14 1.40 11.17 -17.57 -0.20 1.21 16 22 N -0.51 -6.56 10.39 -12.44 -0.13 -6.69 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 25 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.87 7.93 -51.93 -0.41 0.46 16 29 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 30 H 0.41 5.20 8.60 -40.82 -0.35 4.85 16 31 H 0.15 1.77 6.36 -52.49 -0.33 1.43 16 32 H 0.42 1.43 8.96 -34.47 -0.31 1.12 16 33 H 0.42 1.49 8.96 -34.47 -0.31 1.18 16 34 H 0.15 1.05 7.71 -52.49 -0.40 0.64 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 313.34 15.07 4.72 4.72 Total: -1.00 -35.99 313.34 -8.94 -44.92 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.15 Total: 2.78 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -3.05 Total: -18.74 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.87 Total: -49.18 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -1.99 Total: -25.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: 25.16 SS G_CDS: -0.68 Total: 24.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.99 -8.94 -44.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.511 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds