Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30496 * 125.65490 * 2 1 4 4 C 1.34124 * 109.25916 * 179.73226 * 3 2 1 5 5 C 1.34671 * 108.02248 * 0.39358 * 4 3 2 6 6 S 1.76198 * 126.59307 * 179.87313 * 5 4 3 7 7 O 1.42105 * 106.39901 * 156.14855 * 6 5 4 8 8 O 1.42095 * 106.40302 * 23.23145 * 6 5 4 9 9 N 1.65594 * 107.21933 * 269.68934 * 6 5 4 10 10 C 1.36938 * 120.00130 * 90.00479 * 9 6 5 11 11 H 1.08006 * 119.99585 * 231.30531 * 10 9 6 12 12 C 1.38806 * 119.99937 * 51.29583 * 10 9 6 13 13 N 1.31615 * 120.00189 * 23.87754 * 12 10 9 14 14 Si 1.86803 * 120.00097 * 203.87223 * 12 10 9 15 15 H 1.48499 * 109.47067 * 270.00448 * 14 12 10 16 16 H 1.48500 * 109.46964 * 30.00210 * 14 12 10 17 17 H 1.48498 * 109.47062 * 150.00358 * 14 12 10 18 18 C 1.46505 * 120.00073 * 269.99839 * 9 6 5 19 19 C 1.52996 * 117.49852 * 183.43078 * 18 9 6 20 20 C 1.53004 * 60.00258 * 252.51329 * 19 18 9 21 21 N 1.35041 * 125.64872 * 179.97438 * 2 1 3 22 22 C 1.46501 * 126.39879 * 0.03066 * 21 2 1 23 23 H 1.08997 * 109.47416 * 270.03470 * 1 2 3 24 24 H 1.09006 * 109.46603 * 30.02811 * 1 2 3 25 25 H 1.09002 * 109.47256 * 150.02711 * 1 2 3 26 26 H 1.08003 * 125.99064 * 180.24621 * 4 3 2 27 27 H 0.97000 * 120.00289 * 174.94337 * 13 12 10 28 28 H 1.08994 * 115.55136 * 329.14340 * 18 9 6 29 29 H 1.08996 * 117.49945 * 359.97438 * 19 18 9 30 30 H 1.08997 * 117.50164 * 145.02447 * 19 18 9 31 31 H 1.09001 * 117.49772 * 252.51405 * 20 19 18 32 32 H 1.08997 * 117.49970 * 107.48484 * 20 19 18 33 33 H 1.09007 * 109.46966 * 269.99544 * 22 21 2 34 34 H 1.09001 * 109.47366 * 29.99273 * 22 21 2 35 35 H 1.08992 * 109.47445 * 149.99647 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0603 0.0000 4 6 3.5543 0.6817 0.0059 5 6 3.5926 -0.6644 0.0009 6 16 5.0365 -1.6742 0.0022 7 8 4.6488 -2.9279 0.5473 8 8 6.0813 -0.8797 0.5466 9 7 5.4389 -1.9561 -1.5792 10 6 6.2850 -1.1009 -2.2334 11 1 6.0027 -0.6900 -3.1915 12 6 7.5052 -0.7620 -1.6650 13 7 8.0674 -1.5646 -0.7864 14 14 8.3494 0.8330 -2.1474 15 1 9.2401 0.5896 -3.3103 16 1 7.3251 1.8447 -2.5116 17 1 9.1540 1.3327 -1.0036 18 6 4.8898 -3.1206 -2.2784 19 6 5.3619 -3.3712 -3.7120 20 6 3.9439 -2.8586 -3.4521 21 7 2.2940 -1.0974 0.0005 22 6 1.8424 -2.4910 0.0005 23 1 -0.3634 0.0006 1.0276 24 1 -0.3633 0.8898 -0.5143 25 1 -0.3634 -0.8902 -0.5134 26 1 4.4098 1.3409 0.0111 27 1 8.9529 -1.3651 -0.4442 28 1 4.6888 -3.9917 -1.6548 29 1 6.0806 -2.6694 -4.1351 30 1 5.4717 -4.4074 -4.0318 31 1 3.1209 -3.5576 -3.6009 32 1 3.7301 -1.8199 -3.7040 33 1 1.7301 -2.8366 1.0282 34 1 0.8839 -2.5625 -0.5136 35 1 2.5772 -3.1111 -0.5130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599225009.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = 2.321520 kcal Electronic energy + Delta-G solvation = -21866.371892 eV Core-core repulsion = 18607.154644 eV Total energy + Delta-G solvation = -3259.217249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.04063 -38.81815 -37.75230 -36.21297 -35.15946 -34.98142 -32.78425 -32.49219 -28.43239 -27.55051 -26.86316 -23.14782 -22.90820 -22.28557 -21.05419 -20.71697 -19.15047 -18.10777 -17.74697 -17.23400 -16.78826 -16.52380 -16.13504 -15.58677 -15.32095 -14.86730 -14.33716 -14.22725 -14.08862 -13.83420 -13.60338 -13.40762 -13.17592 -13.12254 -12.93447 -12.60660 -12.47447 -12.35410 -12.17427 -12.09880 -12.06069 -11.63419 -11.13160 -10.99188 -10.66180 -10.59327 -9.70282 -9.35232 -8.48022 -6.16878 -0.03371 0.63289 1.45586 1.53662 1.61024 1.81593 1.90930 2.30498 2.76747 2.97381 3.16874 3.40166 3.44716 3.81874 3.92027 4.06923 4.18284 4.27485 4.33212 4.36609 4.42227 4.66588 4.71021 4.75322 4.87202 4.92076 4.99424 5.16014 5.25326 5.42851 5.51373 5.52654 5.78304 6.19524 6.23899 6.85854 6.96550 7.38433 8.57392 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.008429 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.217097 B = 3321.243096 C = 3842.252619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.220 3.780 3 N -0.533 5.533 4 C 0.052 3.948 5 C -0.588 4.588 6 S 2.585 3.415 7 O -1.029 7.029 8 O -0.980 6.980 9 N -0.792 5.792 10 C -0.285 4.285 11 H 0.091 0.909 12 C 0.024 3.976 13 N -0.820 5.820 14 Si 0.970 3.030 15 H -0.252 1.252 16 H -0.256 1.256 17 H -0.288 1.288 18 C 0.055 3.945 19 C -0.151 4.151 20 C -0.185 4.185 21 N -0.410 5.410 22 C 0.052 3.948 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.167 0.833 27 H 0.280 0.720 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.395 -2.411 -4.719 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.045 4.045 3 N -0.253 5.253 4 C -0.101 4.101 5 C -0.779 4.779 6 S 2.685 3.315 7 O -1.018 7.018 8 O -0.968 6.968 9 N -0.615 5.615 10 C -0.433 4.433 11 H 0.109 0.891 12 C -0.191 4.191 13 N -0.456 5.456 14 Si 0.792 3.208 15 H -0.176 1.176 16 H -0.180 1.180 17 H -0.214 1.214 18 C -0.053 4.053 19 C -0.190 4.190 20 C -0.224 4.224 21 N -0.090 5.090 22 C -0.088 4.088 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.184 0.816 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.439 -2.145 -3.554 13.114 hybrid contribution 0.868 0.469 0.203 1.007 sum -11.571 -1.675 -3.351 12.163 Atomic orbital electron populations 1.20507 0.80453 1.06036 1.05330 1.24795 0.97961 0.81180 1.00537 1.70200 1.01902 1.29954 1.23279 1.22187 0.95317 0.92034 1.00598 1.35328 1.06588 1.11676 1.24356 1.09759 0.72327 0.72479 0.76973 1.93229 1.84623 1.43666 1.80281 1.93382 1.52854 1.71667 1.78914 1.52300 1.49765 1.28243 1.31156 1.19210 0.94864 1.23839 1.05382 0.89100 1.26576 0.97052 1.00474 0.95037 1.69888 1.14476 1.35867 1.25380 0.85288 0.78759 0.78638 0.78102 1.17611 1.18011 1.21370 1.21657 1.03869 0.89867 0.89910 1.23144 0.97298 1.02725 0.95806 1.23377 0.94012 1.02115 1.02913 1.45108 1.03561 1.08995 1.51354 1.22598 1.03657 0.77211 1.05372 0.88157 0.88215 0.87478 0.81550 0.90986 0.86705 0.88752 0.86685 0.86133 0.90162 0.89401 0.84736 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.19 71.23 0.73 -0.51 16 2 C 0.22 7.36 7.90 138.13 1.09 8.45 16 3 N -0.53 -21.90 11.25 -188.14 -2.12 -24.01 16 4 C 0.05 2.37 11.64 83.52 0.97 3.34 16 5 C -0.59 -26.60 7.02 83.09 0.58 -26.02 16 6 S 2.58 132.27 5.45 -56.49 -0.31 131.96 16 7 O -1.03 -53.22 14.78 -128.00 -1.89 -55.12 16 8 O -0.98 -57.61 14.13 -128.00 -1.81 -59.42 16 9 N -0.79 -37.90 3.02 -322.93 -0.97 -38.87 16 10 C -0.29 -14.12 7.72 84.03 0.65 -13.47 16 11 H 0.09 4.21 7.64 -2.91 -0.02 4.18 16 12 C 0.02 1.22 4.04 84.86 0.34 1.56 16 13 N -0.82 -46.00 11.75 21.65 0.25 -45.75 16 14 Si 0.97 41.11 29.62 68.60 2.03 43.15 16 15 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 18 C 0.06 2.16 6.32 44.99 0.28 2.45 16 19 C -0.15 -4.95 9.82 30.59 0.30 -4.64 16 20 C -0.18 -5.64 10.35 30.60 0.32 -5.32 16 21 N -0.41 -14.90 3.15 -534.54 -1.68 -16.58 16 22 C 0.05 1.43 10.11 127.77 1.29 2.72 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.11 1.32 7.07 -2.39 -0.02 1.30 16 26 H 0.17 7.61 8.06 -2.91 -0.02 7.58 16 27 H 0.28 14.90 8.32 -92.71 -0.77 14.13 16 28 H 0.12 4.45 7.46 -2.39 -0.02 4.44 16 29 H 0.09 3.40 6.89 -2.39 -0.02 3.38 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.04 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.13 2.19 7.04 -2.39 -0.02 2.17 16 35 H 0.08 2.60 6.83 -2.39 -0.02 2.58 16 Total: -1.00 -74.22 307.74 1.16 -73.06 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 1.10 Total: 23.03 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 6.56 Total: -31.44 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -4.52 Total: -125.22 kcal Atomic # 8 Polarization: -110.83 SS G_CDS: -3.70 Total: -114.53 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 132.27 SS G_CDS: -0.31 Total: 131.96 kcal Total: -74.22 1.16 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599225009.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.378 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds