Wall clock time and date at job start Wed Apr 15 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46966 * 2 1 4 4 C 1.50707 * 109.47016 * 240.00420 * 2 1 3 5 5 H 1.07993 * 119.99744 * 239.99619 * 4 2 1 6 6 C 1.37880 * 119.99972 * 59.99723 * 4 2 1 7 7 N 1.31516 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00160 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46847 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47107 * 119.99701 * 8 6 4 11 11 H 1.48492 * 109.47482 * 240.00165 * 8 6 4 12 12 N 1.46498 * 109.47431 * 120.00384 * 2 1 3 13 13 C 1.46499 * 120.00117 * 60.00060 * 12 2 1 14 14 C 1.38405 * 119.99522 * 240.00184 * 12 2 1 15 15 N 1.32503 * 119.21966 * 359.97438 * 14 12 2 16 16 C 1.32269 * 120.73790 * 179.97438 * 15 14 12 17 17 C 1.38629 * 119.19510 * 0.02562 * 16 15 14 18 18 C 1.38580 * 118.55892 * 0.27673 * 17 16 15 19 19 S 1.76199 * 120.40097 * 179.69956 * 18 17 16 20 20 C 1.81399 * 104.44917 * 89.99350 * 19 18 17 21 21 O 1.42089 * 104.27877 * 206.06682 * 19 18 17 22 22 O 1.42098 * 104.27731 * 333.92806 * 19 18 17 23 23 N 1.32288 * 119.19605 * 359.43588 * 18 17 16 24 24 H 1.08996 * 109.47389 * 59.99763 * 1 2 3 25 25 H 1.08998 * 109.46512 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46692 * 299.99389 * 1 2 3 27 27 H 0.97000 * 119.99969 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47043 * 270.00358 * 13 12 2 29 29 H 1.09005 * 109.46965 * 29.99683 * 13 12 2 30 30 H 1.08995 * 109.47031 * 149.99817 * 13 12 2 31 31 H 1.07994 * 120.40052 * 179.97438 * 16 15 14 32 32 H 1.08002 * 120.71605 * 179.97438 * 17 16 15 33 33 H 1.09011 * 109.47061 * 60.00157 * 20 19 18 34 34 H 1.09003 * 109.47304 * 179.97438 * 20 19 18 35 35 H 1.08992 * 109.47721 * 300.00242 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1474 -2.2860 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0185 -0.6907 1.1961 13 6 1.6646 -2.0933 1.4279 14 6 2.8142 -0.0180 2.1071 15 7 3.1251 1.2502 1.8818 16 6 3.8829 1.9219 2.7326 17 6 4.3528 1.2830 3.8697 18 6 4.0138 -0.0455 4.0710 19 16 4.5910 -0.9070 5.4956 20 6 3.3056 -0.6283 6.7448 21 8 4.6111 -2.2705 5.0963 22 8 5.7884 -0.2305 5.8529 23 7 3.2472 -0.6575 3.1835 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 0.7080 1.1610 -3.4844 28 1 0.7378 -2.1445 1.9992 29 1 1.5296 -2.5969 0.4706 30 1 2.4631 -2.5819 1.9861 31 1 4.1333 2.9552 2.5434 32 1 4.9737 1.8079 4.5806 33 1 2.3568 -1.0267 6.3850 34 1 3.5832 -1.1325 7.6705 35 1 3.2039 0.4410 6.9294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911959737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:57 Heat of formation + Delta-G solvation = 4.651131 kcal Electronic energy + Delta-G solvation = -20639.721273 eV Core-core repulsion = 17380.605044 eV Total energy + Delta-G solvation = -3259.116229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57777 -37.18105 -36.66391 -36.02035 -33.52766 -33.11313 -31.05405 -29.73669 -29.09482 -26.23407 -25.29516 -24.68905 -22.78641 -20.54561 -18.98309 -17.84116 -17.49827 -16.41615 -16.29745 -15.82517 -15.62806 -15.14556 -14.82205 -14.74454 -13.88735 -13.51217 -13.40890 -13.39740 -13.06603 -12.53750 -12.17491 -12.07224 -11.80389 -11.58683 -11.37775 -11.18224 -11.09108 -10.93765 -10.81039 -10.74643 -10.67219 -10.36031 -10.20862 -9.91295 -9.15211 -8.74789 -8.46642 -7.16421 -6.14356 -4.22705 -0.12713 0.90600 1.49287 2.63451 3.22385 3.30048 3.32435 3.41083 3.64606 3.98666 4.19416 4.33552 4.49740 4.55073 4.85897 5.14346 5.16913 5.25490 5.35209 5.40936 5.58563 5.99159 6.13228 6.41194 6.46774 6.67246 6.76386 6.95618 7.04675 7.31141 7.52200 7.71561 7.91374 8.09123 8.30559 8.59586 8.85644 9.43606 10.90207 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.029248 B = 0.004397 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.106252 B = 6366.563296 C = 6491.562311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.073 0.927 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.547 5.547 13 C 0.098 3.902 14 C 0.554 3.446 15 N -0.523 5.523 16 C 0.191 3.809 17 C -0.245 4.245 18 C -0.330 4.330 19 S 2.509 3.491 20 C -0.644 4.644 21 O -0.916 6.916 22 O -0.931 6.931 23 N -0.498 5.498 24 H 0.096 0.904 25 H 0.031 0.969 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 0.359 16.646 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.091 0.909 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.257 5.257 13 C -0.046 4.046 14 C 0.197 3.803 15 N -0.245 5.245 16 C 0.017 3.983 17 C -0.275 4.275 18 C -0.562 4.562 19 S 2.684 3.316 20 C -0.795 4.795 21 O -0.912 6.912 22 O -0.928 6.928 23 N -0.223 5.223 24 H 0.115 0.885 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.429 -0.658 15.627 15.828 hybrid contribution 0.094 0.626 -0.586 0.863 sum 2.524 -0.032 15.041 15.251 Atomic orbital electron populations 1.22114 0.97924 0.99665 1.00822 1.19181 0.90940 0.94616 0.78902 0.90927 1.21368 1.31953 1.13200 0.90118 0.92100 1.24863 0.94834 0.94963 0.98929 1.69879 1.36273 1.22600 1.23784 0.86412 0.78649 0.79643 0.82556 1.19764 1.20841 1.20864 1.47156 1.46726 1.11098 1.20676 1.21587 0.99645 0.81251 1.02096 1.19675 0.88163 0.85806 0.86665 1.68129 1.16802 1.08228 1.31336 1.23089 0.88085 0.99487 0.87604 1.22115 1.06736 0.95421 1.03209 1.33248 1.03481 1.03584 1.15901 1.05401 0.76121 0.74707 0.75357 1.30148 1.19552 1.12461 1.17345 1.93601 1.86005 1.31365 1.80270 1.93605 1.40326 1.75843 1.83004 1.68058 1.13836 1.36559 1.03860 0.88532 0.94987 0.97080 0.92661 0.93878 0.90053 0.91174 0.81292 0.82921 0.84617 0.84779 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.11 16 2 C 0.26 6.57 2.66 -69.08 -0.18 6.39 16 3 H 0.07 1.99 6.76 -51.93 -0.35 1.64 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.41 16 5 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.55 -12.21 2.85 -177.61 -0.51 -12.72 16 13 C 0.10 1.88 9.44 59.85 0.56 2.45 16 14 C 0.55 11.77 8.17 -322.81 -2.64 9.13 16 15 N -0.52 -10.70 8.85 -13.93 -0.12 -10.83 16 16 C 0.19 2.95 11.30 -17.22 -0.19 2.76 16 17 C -0.24 -3.36 9.59 -39.31 -0.38 -3.73 16 18 C -0.33 -5.01 6.56 -17.23 -0.11 -5.12 16 19 S 2.51 28.91 5.88 -107.50 -0.63 28.27 16 20 C -0.64 -4.16 10.80 101.05 1.09 -3.07 16 21 O -0.92 -14.14 17.77 -57.54 -1.02 -15.16 16 22 O -0.93 -12.22 17.20 -57.54 -0.99 -13.21 16 23 N -0.50 -9.37 8.86 -13.14 -0.12 -9.49 16 24 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.59 7.02 -51.93 -0.36 1.22 16 30 H 0.07 1.30 7.33 -51.93 -0.38 0.92 16 31 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.15 1.54 7.66 -52.49 -0.40 1.13 16 33 H 0.14 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -34.72 311.26 -9.25 -43.97 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.27 Total: -0.66 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.89 Total: -7.03 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.12 Total: -56.79 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -2.01 Total: -28.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 28.91 SS G_CDS: -0.63 Total: 28.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.72 -9.25 -43.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911959737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.621 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds