Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46642 * 2 1 4 4 H 1.09001 * 109.47202 * 55.00498 * 3 2 1 5 5 C 1.50699 * 109.46780 * 174.99998 * 3 2 1 6 6 H 1.08006 * 119.99815 * 120.00197 * 5 3 2 7 7 C 1.37872 * 120.00187 * 300.00186 * 5 3 2 8 8 N 1.31513 * 120.00185 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00064 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47080 * 120.00142 * 9 7 5 12 12 H 1.48499 * 109.47413 * 239.99721 * 9 7 5 13 13 N 1.46499 * 109.47531 * 295.00188 * 3 2 1 14 14 C 1.38399 * 120.00183 * 84.99799 * 13 3 2 15 15 N 1.32511 * 119.21760 * 0.02562 * 14 13 3 16 16 C 1.32259 * 120.74302 * 179.97438 * 15 14 13 17 17 C 1.38630 * 119.19496 * 359.97438 * 16 15 14 18 18 C 1.38585 * 118.55570 * 0.02562 * 17 16 15 19 19 S 1.76199 * 120.39828 * 180.02562 * 18 17 16 20 20 C 1.81396 * 104.44950 * 89.99956 * 19 18 17 21 21 O 1.42095 * 104.27731 * 206.07318 * 19 18 17 22 22 O 1.42105 * 104.28048 * 333.92980 * 19 18 17 23 23 N 1.32284 * 119.19965 * 0.27488 * 18 17 16 24 24 H 1.08994 * 109.47023 * 299.99510 * 1 2 3 25 25 H 1.08992 * 109.47045 * 60.00038 * 1 2 3 26 26 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46713 * 240.00173 * 2 1 3 28 28 H 1.08992 * 109.47045 * 119.99962 * 2 1 3 29 29 H 0.97005 * 120.00284 * 180.02562 * 8 7 5 30 30 H 0.97004 * 119.99898 * 265.00750 * 13 3 2 31 31 H 1.07995 * 120.40572 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.71935 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.46922 * 60.00555 * 20 19 18 34 34 H 1.09000 * 109.47282 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47338 * 300.00078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5987 1.5454 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4963 -0.5189 1.4626 13 7 1.6523 2.0976 -1.2517 14 6 0.4023 2.6796 -1.3700 15 7 -0.4316 2.6358 -0.3411 16 6 -1.6332 3.1827 -0.4208 17 6 -2.0152 3.8069 -1.5982 18 6 -1.1186 3.8345 -2.6546 19 16 -1.5534 4.6154 -4.1730 20 6 -1.0119 6.3347 -3.9690 21 8 -0.7580 3.9544 -5.1474 22 8 -2.9720 4.5408 -4.2119 23 7 0.0658 3.2630 -2.5108 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0613 2.9498 30 1 2.2718 2.1232 -1.9978 31 1 -2.3085 3.1434 0.4210 32 1 -2.9906 4.2611 -1.6905 33 1 0.0635 6.3584 -3.7927 34 1 -1.2440 6.8983 -4.8726 35 1 -1.5294 6.7802 -3.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912051034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = -3.899356 kcal Electronic energy + Delta-G solvation = -20576.516261 eV Core-core repulsion = 17317.029255 eV Total energy + Delta-G solvation = -3259.487006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64875 -37.18560 -36.44623 -36.02709 -33.51199 -33.12196 -31.35816 -30.00218 -29.70512 -26.85545 -24.93324 -23.46743 -22.69426 -20.15168 -19.08452 -18.22772 -17.72850 -16.52475 -16.39762 -15.65981 -15.60422 -15.17834 -15.01509 -14.83529 -13.81223 -13.73447 -13.49302 -13.39373 -12.84742 -12.73071 -12.18192 -12.07331 -11.77566 -11.70037 -11.36061 -11.17193 -11.09721 -10.98301 -10.79660 -10.74180 -10.47495 -10.25716 -9.88941 -9.69204 -9.12040 -8.78131 -8.53115 -7.36715 -6.21546 -4.30666 -0.13643 0.87795 1.46418 2.62541 3.19149 3.27345 3.30174 3.51915 3.63331 4.02657 4.17187 4.28337 4.48626 4.55212 4.86000 5.10692 5.12204 5.30932 5.38294 5.42163 5.59650 6.26662 6.31139 6.34804 6.55322 6.92083 6.95863 7.07463 7.23536 7.44793 7.59524 7.61848 7.80712 8.07439 8.33300 8.61342 8.87974 9.36219 10.83868 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004319 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.570481 B = 6481.795681 C = 6976.470074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 C 0.278 3.722 4 H 0.057 0.943 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.662 5.662 14 C 0.556 3.444 15 N -0.515 5.515 16 C 0.186 3.814 17 C -0.242 4.242 18 C -0.331 4.331 19 S 2.509 3.491 20 C -0.644 4.644 21 O -0.916 6.916 22 O -0.932 6.932 23 N -0.502 5.502 24 H 0.056 0.944 25 H 0.028 0.972 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.103 0.897 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 10.166 -7.145 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C 0.176 3.824 4 H 0.075 0.925 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.291 5.291 14 C 0.197 3.803 15 N -0.237 5.237 16 C 0.012 3.988 17 C -0.272 4.272 18 C -0.563 4.563 19 S 2.685 3.315 20 C -0.795 4.795 21 O -0.913 6.913 22 O -0.928 6.928 23 N -0.226 5.226 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.243 0.757 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.325 9.070 -7.359 14.946 hybrid contribution 0.709 0.515 0.650 1.091 sum -8.616 9.585 -6.709 14.530 Atomic orbital electron populations 1.21836 0.98592 0.98108 1.00593 1.21975 0.92525 0.99735 1.02568 1.18969 0.94432 0.89126 0.79849 0.92521 1.21247 0.90455 1.39275 1.06484 0.91880 1.24850 0.98782 0.94587 0.95251 1.69889 1.35149 1.37513 1.09347 0.86365 0.84576 0.77872 0.78151 1.19685 1.20839 1.20776 1.45367 1.09523 1.54931 1.19273 1.19781 0.88418 0.87635 0.84458 1.68316 1.04404 1.20384 1.30604 1.23086 0.91678 0.87730 0.96281 1.22122 1.01958 1.07616 0.95469 1.33227 0.96494 1.07356 1.19242 1.05390 0.74764 0.77633 0.73763 1.30147 1.13960 1.23268 1.12139 1.93604 1.70523 1.71170 1.55978 1.93605 1.27366 1.86526 1.85324 1.68063 1.17120 1.13495 1.23966 0.92536 0.95313 0.95668 0.94920 0.87881 0.92517 0.75692 0.81339 0.82929 0.84567 0.84771 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.43 37.16 0.31 -2.51 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.28 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.06 1.52 7.50 -51.93 -0.39 1.13 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.66 -14.21 5.15 -56.93 -0.29 -14.51 16 14 C 0.56 11.17 6.99 -322.81 -2.26 8.91 16 15 N -0.51 -9.76 6.37 -13.93 -0.09 -9.85 16 16 C 0.19 2.71 11.30 -17.22 -0.19 2.51 16 17 C -0.24 -3.18 9.59 -39.31 -0.38 -3.55 16 18 C -0.33 -4.88 6.57 -17.23 -0.11 -4.99 16 19 S 2.51 28.36 5.88 -107.50 -0.63 27.72 16 20 C -0.64 -4.18 10.80 101.05 1.09 -3.09 16 21 O -0.92 -14.06 17.76 -57.54 -1.02 -15.08 16 22 O -0.93 -11.96 17.20 -57.54 -0.99 -12.95 16 23 N -0.50 -9.15 10.19 -13.14 -0.13 -9.29 16 24 H 0.06 1.19 7.65 -51.93 -0.40 0.80 16 25 H 0.03 0.60 5.60 -51.93 -0.29 0.31 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.41 8.28 8.65 -40.82 -0.35 7.93 16 31 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.15 1.47 7.66 -52.49 -0.40 1.07 16 33 H 0.14 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 307.91 15.07 4.64 4.64 Total: -1.00 -33.35 307.91 -9.37 -42.71 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.22 Total: 6.28 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.23 Total: -11.80 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.11 Total: -56.77 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -2.01 Total: -28.03 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 28.36 SS G_CDS: -0.63 Total: 27.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.35 -9.37 -42.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912051034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.815 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds