Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46642 * 2 1 4 4 H 1.09001 * 109.47202 * 55.00498 * 3 2 1 5 5 C 1.50699 * 109.46780 * 174.99998 * 3 2 1 6 6 H 1.08006 * 119.99815 * 120.00197 * 5 3 2 7 7 C 1.37872 * 120.00187 * 300.00186 * 5 3 2 8 8 N 1.31513 * 120.00185 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00064 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47145 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47080 * 120.00142 * 9 7 5 12 12 H 1.48499 * 109.47413 * 239.99721 * 9 7 5 13 13 N 1.46499 * 109.47531 * 295.00188 * 3 2 1 14 14 C 1.38399 * 120.00183 * 84.99799 * 13 3 2 15 15 N 1.32511 * 119.21760 * 0.02562 * 14 13 3 16 16 C 1.32259 * 120.74302 * 179.97438 * 15 14 13 17 17 C 1.38630 * 119.19496 * 359.97438 * 16 15 14 18 18 C 1.38585 * 118.55570 * 0.02562 * 17 16 15 19 19 S 1.76199 * 120.39828 * 180.02562 * 18 17 16 20 20 C 1.81396 * 104.44950 * 89.99956 * 19 18 17 21 21 O 1.42095 * 104.27731 * 206.07318 * 19 18 17 22 22 O 1.42105 * 104.28048 * 333.92980 * 19 18 17 23 23 N 1.32284 * 119.19965 * 0.27488 * 18 17 16 24 24 H 1.08994 * 109.47023 * 299.99510 * 1 2 3 25 25 H 1.08992 * 109.47045 * 60.00038 * 1 2 3 26 26 H 1.09004 * 109.46974 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46713 * 240.00173 * 2 1 3 28 28 H 1.08992 * 109.47045 * 119.99962 * 2 1 3 29 29 H 0.97005 * 120.00284 * 180.02562 * 8 7 5 30 30 H 0.97004 * 119.99898 * 265.00750 * 13 3 2 31 31 H 1.07995 * 120.40572 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.71935 * 179.97438 * 17 16 15 33 33 H 1.09005 * 109.46922 * 60.00555 * 20 19 18 34 34 H 1.09000 * 109.47282 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47338 * 300.00078 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8801 1.3810 10 1 6.5987 1.5454 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4963 -0.5189 1.4626 13 7 1.6523 2.0976 -1.2517 14 6 0.4023 2.6796 -1.3700 15 7 -0.4316 2.6358 -0.3411 16 6 -1.6332 3.1827 -0.4208 17 6 -2.0152 3.8069 -1.5982 18 6 -1.1186 3.8345 -2.6546 19 16 -1.5534 4.6154 -4.1730 20 6 -1.0119 6.3347 -3.9690 21 8 -0.7580 3.9544 -5.1474 22 8 -2.9720 4.5408 -4.2119 23 7 0.0658 3.2630 -2.5108 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0613 2.9498 30 1 2.2718 2.1232 -1.9978 31 1 -2.3085 3.1434 0.4210 32 1 -2.9906 4.2611 -1.6905 33 1 0.0635 6.3584 -3.7927 34 1 -1.2440 6.8983 -4.8726 35 1 -1.5294 6.7802 -3.1195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912051034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -28.486299 kcal Electronic energy + Delta-G solvation = -20577.582430 eV Core-core repulsion = 17317.029255 eV Total energy + Delta-G solvation = -3260.553176 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95470 -38.19077 -38.08808 -37.02626 -34.88369 -34.77852 -33.08853 -31.46246 -30.31883 -28.67585 -26.15064 -25.14803 -24.20840 -21.85250 -20.22817 -19.62785 -18.92443 -18.16495 -17.34083 -17.05882 -16.82375 -16.52546 -16.36363 -16.27004 -15.51550 -14.91435 -14.62399 -14.40653 -13.98442 -13.94454 -13.59248 -13.22843 -13.17788 -13.08139 -12.90931 -12.81498 -12.74085 -12.37239 -12.19433 -12.06837 -11.92617 -11.84089 -11.59588 -11.39790 -10.98388 -10.52852 -10.05625 -8.88896 -8.19262 -6.35052 -0.97394 -0.30196 0.21799 1.41427 1.43670 1.54554 1.69509 2.09309 2.42555 2.64203 3.01536 3.06650 3.10893 3.47846 3.82678 4.10833 4.12240 4.29540 4.32321 4.43162 4.49637 4.52532 4.71563 4.96191 5.04523 5.19624 5.24820 5.40616 5.53719 5.60481 5.77441 5.88004 6.04287 6.27304 6.71561 6.72836 7.28976 7.42214 8.85941 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004319 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.570481 B = 6481.795681 C = 6976.470074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 C 0.294 3.706 4 H 0.025 0.975 5 C -0.553 4.553 6 H 0.061 0.939 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.537 3.463 15 N -0.548 5.548 16 C 0.177 3.823 17 C -0.221 4.221 18 C -0.350 4.350 19 S 2.516 3.484 20 C -0.613 4.613 21 O -0.964 6.964 22 O -0.949 6.949 23 N -0.521 5.521 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.266 0.734 30 H 0.406 0.594 31 H 0.209 0.791 32 H 0.195 0.805 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.284 12.275 -7.618 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 C 0.190 3.810 4 H 0.043 0.957 5 C -0.592 4.592 6 H 0.079 0.921 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.178 3.822 15 N -0.271 5.271 16 C 0.006 3.994 17 C -0.249 4.249 18 C -0.577 4.577 19 S 2.693 3.307 20 C -0.768 4.768 21 O -0.961 6.961 22 O -0.945 6.945 23 N -0.246 5.246 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.243 0.757 31 H 0.225 0.775 32 H 0.212 0.788 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.620 11.156 -7.830 17.279 hybrid contribution 0.886 0.050 0.737 1.154 sum -9.734 11.206 -7.093 16.451 Atomic orbital electron populations 1.21645 0.96599 0.98878 1.00284 1.21830 0.94273 0.99301 1.00830 1.18482 0.93342 0.88943 0.80182 0.95745 1.21561 0.91670 1.39290 1.06640 0.92061 1.25617 1.02937 0.94207 0.94925 1.70006 1.36766 1.38070 1.09755 0.85386 0.79515 0.77859 0.78098 1.19261 1.20484 1.20417 1.44973 1.10825 1.56879 1.18335 1.19832 0.88202 0.88554 0.85570 1.68299 1.05996 1.21914 1.30842 1.23876 0.90722 0.86651 0.98187 1.22666 1.02906 1.05230 0.94079 1.34067 0.95556 1.06918 1.21175 1.05315 0.73856 0.79565 0.71967 1.29945 1.14474 1.17110 1.15270 1.93549 1.71293 1.74200 1.57071 1.93574 1.28240 1.87767 1.84937 1.68052 1.19015 1.14161 1.23368 0.92882 0.95451 0.94210 0.95655 0.90330 0.92420 0.75748 0.77483 0.78765 0.83942 0.81388 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 8.43 71.98 0.61 -4.38 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.86 16 3 C 0.29 14.80 2.24 44.24 0.10 14.90 16 4 H 0.02 1.38 7.50 -2.39 -0.02 1.37 16 5 C -0.55 -29.51 8.73 25.60 0.22 -29.28 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -50.16 11.29 21.45 0.24 -49.92 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.68 -30.34 5.15 -334.02 -1.72 -32.06 16 14 C 0.54 21.96 6.99 261.49 1.83 23.79 16 15 N -0.55 -20.77 6.37 -197.98 -1.26 -22.03 16 16 C 0.18 4.82 11.30 84.72 0.96 5.77 16 17 C -0.22 -5.18 9.59 22.45 0.22 -4.96 16 18 C -0.35 -9.76 6.57 84.71 0.56 -9.21 16 19 S 2.52 51.51 5.88 -56.49 -0.33 51.18 16 20 C -0.61 -5.12 10.80 113.37 1.22 -3.90 16 21 O -0.96 -29.21 17.76 -127.65 -2.27 -31.47 16 22 O -0.95 -21.91 17.20 -127.65 -2.20 -24.11 16 23 N -0.52 -19.04 10.19 -195.47 -1.99 -21.04 16 24 H 0.05 2.27 7.65 -2.39 -0.02 2.25 16 25 H 0.03 1.16 5.60 -2.39 -0.01 1.14 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 29 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 30 H 0.41 17.44 8.65 -92.71 -0.80 16.64 16 31 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.20 2.84 7.66 -2.91 -0.02 2.82 16 33 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -75.65 307.91 -0.86 -76.51 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.32 Total: 20.27 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.32 Total: -11.42 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -4.73 Total: -125.04 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -4.46 Total: -55.58 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 51.51 SS G_CDS: -0.33 Total: 51.18 kcal Total: -75.65 -0.86 -76.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912051034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.021 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds