Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47245 * 2 1 4 4 C 1.34954 * 126.03410 * 124.99636 * 3 2 1 5 5 C 1.35316 * 107.74093 * 180.02562 * 4 3 2 6 6 S 1.76205 * 126.03612 * 180.02562 * 5 4 3 7 7 O 1.42094 * 106.39993 * 336.45558 * 6 5 4 8 8 O 1.42100 * 106.39908 * 203.53696 * 6 5 4 9 9 N 1.65599 * 107.21910 * 89.99938 * 6 5 4 10 10 C 1.36940 * 120.00037 * 89.99983 * 9 6 5 11 11 H 1.07997 * 119.99902 * 231.31261 * 10 9 6 12 12 C 1.38807 * 119.99955 * 51.31052 * 10 9 6 13 13 N 1.31619 * 120.00264 * 23.83426 * 12 10 9 14 14 Si 1.86800 * 120.00147 * 203.83546 * 12 10 9 15 15 H 1.48492 * 109.47344 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47084 * 300.00442 * 14 12 10 17 17 H 1.48507 * 109.46894 * 60.00004 * 14 12 10 18 18 C 1.46494 * 119.99960 * 269.99855 * 9 6 5 19 19 C 1.53004 * 117.50070 * 183.44541 * 18 9 6 20 20 C 1.52995 * 117.50069 * 114.78429 * 18 9 6 21 21 C 1.39868 * 107.92254 * 0.26144 * 5 4 3 22 22 N 1.30836 * 108.20129 * 359.56209 * 21 5 4 23 23 H 1.09007 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46821 * 299.99778 * 1 2 3 25 25 H 1.09000 * 109.47151 * 59.99987 * 1 2 3 26 26 H 1.09001 * 109.47103 * 239.99789 * 2 1 3 27 27 H 1.09000 * 109.47151 * 120.00013 * 2 1 3 28 28 H 1.07993 * 126.13072 * 0.02562 * 4 3 2 29 29 H 0.97001 * 120.00204 * 174.94803 * 13 12 10 30 30 H 1.09003 * 115.55265 * 329.11494 * 18 9 6 31 31 H 1.08997 * 117.49630 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.49652 * 145.02158 * 19 18 9 33 33 H 1.09003 * 117.50087 * 214.97992 * 20 18 9 34 34 H 1.09002 * 117.49889 * 359.97438 * 20 18 9 35 35 H 1.08003 * 125.89748 * 179.73018 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9210 0.8940 5 6 3.0713 3.2137 0.5464 6 16 4.1044 4.3667 1.3879 7 8 4.2259 3.8964 2.7232 8 8 3.6126 5.6591 1.0608 9 7 5.6130 4.2561 0.7139 10 6 5.9457 5.0467 -0.3535 11 1 6.3679 4.6032 -1.2431 12 6 5.7403 6.4181 -0.2921 13 7 5.6845 7.0236 0.8753 14 14 5.5430 7.4045 -1.8661 15 1 5.3375 8.8363 -1.5306 16 1 6.7660 7.2617 -2.6963 17 1 4.3693 6.8995 -2.6229 18 6 6.5916 3.3124 1.2597 19 6 7.9931 3.3141 0.6459 20 6 7.0341 2.1554 0.3618 21 6 2.3070 3.4743 -0.5956 22 7 1.6801 2.3749 -0.9275 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3190 1.4125 1.7359 29 1 5.6145 7.9902 0.9174 30 1 6.5107 3.1170 2.3290 31 1 8.1869 4.0172 -0.1641 32 1 8.8342 3.1196 1.3115 33 1 7.2448 1.1990 0.8404 34 1 6.5968 2.0961 -0.6349 35 1 2.2471 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066914582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = 42.234257 kcal Electronic energy + Delta-G solvation = -21338.703853 eV Core-core repulsion = 18081.217351 eV Total energy + Delta-G solvation = -3257.486502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69910 -37.06484 -35.53582 -34.34400 -34.04471 -33.16763 -30.50827 -30.13356 -29.07510 -24.81583 -23.82814 -21.58449 -21.22958 -20.46026 -20.34748 -18.70973 -17.59322 -16.34520 -15.89741 -15.35290 -15.14129 -14.85695 -14.24753 -14.06274 -13.88435 -13.68287 -13.30883 -12.57803 -12.40826 -12.24870 -12.17610 -11.59416 -11.57411 -11.33736 -11.03162 -10.83036 -10.77629 -10.56386 -10.34234 -10.28457 -10.23020 -9.88855 -9.60945 -9.28776 -9.09995 -8.60549 -8.49187 -7.42526 -6.39760 -4.06924 2.00506 2.18347 2.77500 3.01771 3.27785 3.34797 3.35765 4.21103 4.50738 4.69782 4.79989 4.84777 4.99421 5.04973 5.09514 5.30853 5.42386 5.56021 5.64837 5.77137 5.80161 5.87615 5.92188 5.92856 6.13790 6.31248 6.45162 6.61111 6.79634 6.99094 7.03513 7.26369 7.51864 7.63017 7.95605 8.33132 9.03055 9.45408 10.66886 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.007196 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.812195 B = 3889.861034 C = 4416.889586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 N -0.376 5.376 4 C 0.148 3.852 5 C -0.789 4.789 6 S 2.619 3.381 7 O -1.019 7.019 8 O -0.945 6.945 9 N -0.793 5.793 10 C -0.300 4.300 11 H 0.077 0.923 12 C 0.068 3.932 13 N -0.790 5.790 14 Si 0.921 3.079 15 H -0.282 1.282 16 H -0.275 1.275 17 H -0.268 1.268 18 C 0.098 3.902 19 C -0.162 4.162 20 C -0.216 4.216 21 C 0.132 3.868 22 N -0.311 5.311 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.179 0.821 29 H 0.278 0.722 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -11.202 -1.750 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.157 5.157 4 C -0.002 4.002 5 C -0.879 4.879 6 S 2.716 3.284 7 O -1.008 7.008 8 O -0.934 6.934 9 N -0.616 5.616 10 C -0.443 4.443 11 H 0.095 0.905 12 C -0.150 4.150 13 N -0.425 5.425 14 Si 0.747 3.253 15 H -0.208 1.208 16 H -0.200 1.200 17 H -0.192 1.192 18 C -0.011 4.011 19 C -0.201 4.201 20 C -0.256 4.256 21 C -0.056 4.056 22 N -0.131 5.131 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.196 0.804 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.201 -11.349 -1.688 12.219 hybrid contribution 0.214 0.257 -0.599 0.686 sum -3.987 -11.092 -2.287 12.007 Atomic orbital electron populations 1.22046 0.93960 1.02531 1.03677 1.21677 0.96037 0.78198 1.03625 1.49164 1.35280 1.10020 1.21193 1.22356 0.91097 0.93098 0.93617 1.33164 1.25868 1.13074 1.15791 1.07755 0.72930 0.73726 0.74020 1.93293 1.86875 1.83169 1.37512 1.93423 1.80110 1.35941 1.83933 1.52258 1.19634 1.44668 1.45036 1.18723 1.44765 0.86810 0.94049 0.90522 1.25655 0.94226 0.97546 0.97529 1.69812 1.36397 1.10931 1.25323 0.86116 0.79016 0.78572 0.81631 1.20757 1.20049 1.19245 1.21383 0.91972 0.92964 0.94796 1.23032 0.92286 1.00855 1.03970 1.23349 1.06664 0.93296 1.02318 1.23465 0.91864 0.96899 0.93416 1.77216 1.24991 0.97227 1.13688 0.90917 0.92089 0.91087 0.89889 0.88750 0.80382 0.91155 0.86723 0.87386 0.89925 0.90055 0.89268 0.79291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 10.10 37.16 0.38 -1.26 16 2 C 0.13 1.39 7.23 -4.04 -0.03 1.36 16 3 N -0.38 -6.19 3.68 -61.37 -0.23 -6.41 16 4 C 0.15 2.66 11.19 -17.22 -0.19 2.47 16 5 C -0.79 -16.74 6.17 -40.01 -0.25 -16.99 16 6 S 2.62 64.84 5.59 -107.50 -0.60 64.24 16 7 O -1.02 -26.44 16.68 -57.17 -0.95 -27.39 16 8 O -0.95 -26.31 14.13 -57.17 -0.81 -27.12 16 9 N -0.79 -19.03 3.02 -53.43 -0.16 -19.19 16 10 C -0.30 -7.45 7.72 -15.06 -0.12 -7.57 16 11 H 0.08 1.82 7.64 -52.49 -0.40 1.42 16 12 C 0.07 1.76 4.04 -17.43 -0.07 1.69 16 13 N -0.79 -21.90 11.74 55.49 0.65 -21.25 16 14 Si 0.92 20.26 29.62 -169.99 -5.03 15.23 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.10 2.04 6.32 -67.93 -0.43 1.61 16 19 C -0.16 -2.95 9.83 -26.69 -0.26 -3.22 16 20 C -0.22 -3.73 10.36 -26.70 -0.28 -4.01 16 21 C 0.13 2.71 11.81 -17.37 -0.21 2.50 16 22 N -0.31 -5.93 12.42 30.62 0.38 -5.55 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.18 2.67 8.06 -52.49 -0.42 2.24 16 29 H 0.28 7.30 8.32 -40.82 -0.34 6.96 16 30 H 0.12 2.35 7.46 -51.93 -0.39 1.96 16 31 H 0.11 2.10 6.89 -51.93 -0.36 1.75 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.19 3.69 8.06 -52.48 -0.42 3.27 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -32.86 314.46 -7.97 -40.83 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.51 Total: 5.29 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -1.45 Total: -23.41 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.65 Total: -52.40 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -1.76 Total: -54.51 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Atomic # 16 Polarization: 64.84 SS G_CDS: -0.60 Total: 64.24 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.86 -7.97 -40.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066914582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.063 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds