Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47245 * 2 1 4 4 C 1.34954 * 126.03410 * 124.99636 * 3 2 1 5 5 C 1.35316 * 107.74093 * 180.02562 * 4 3 2 6 6 S 1.76205 * 126.03612 * 180.02562 * 5 4 3 7 7 O 1.42094 * 106.39993 * 336.45558 * 6 5 4 8 8 O 1.42100 * 106.39908 * 203.53696 * 6 5 4 9 9 N 1.65599 * 107.21910 * 89.99938 * 6 5 4 10 10 C 1.36940 * 120.00037 * 89.99983 * 9 6 5 11 11 H 1.07997 * 119.99902 * 231.31261 * 10 9 6 12 12 C 1.38807 * 119.99955 * 51.31052 * 10 9 6 13 13 N 1.31619 * 120.00264 * 23.83426 * 12 10 9 14 14 Si 1.86800 * 120.00147 * 203.83546 * 12 10 9 15 15 H 1.48492 * 109.47344 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47084 * 300.00442 * 14 12 10 17 17 H 1.48507 * 109.46894 * 60.00004 * 14 12 10 18 18 C 1.46494 * 119.99960 * 269.99855 * 9 6 5 19 19 C 1.53004 * 117.50070 * 183.44541 * 18 9 6 20 20 C 1.52995 * 117.50069 * 114.78429 * 18 9 6 21 21 C 1.39868 * 107.92254 * 0.26144 * 5 4 3 22 22 N 1.30836 * 108.20129 * 359.56209 * 21 5 4 23 23 H 1.09007 * 109.47036 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46821 * 299.99778 * 1 2 3 25 25 H 1.09000 * 109.47151 * 59.99987 * 1 2 3 26 26 H 1.09001 * 109.47103 * 239.99789 * 2 1 3 27 27 H 1.09000 * 109.47151 * 120.00013 * 2 1 3 28 28 H 1.07993 * 126.13072 * 0.02562 * 4 3 2 29 29 H 0.97001 * 120.00204 * 174.94803 * 13 12 10 30 30 H 1.09003 * 115.55265 * 329.11494 * 18 9 6 31 31 H 1.08997 * 117.49630 * 359.97438 * 19 18 9 32 32 H 1.09000 * 117.49652 * 145.02158 * 19 18 9 33 33 H 1.09003 * 117.50087 * 214.97992 * 20 18 9 34 34 H 1.09002 * 117.49889 * 359.97438 * 20 18 9 35 35 H 1.08003 * 125.89748 * 179.73018 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9210 0.8940 5 6 3.0713 3.2137 0.5464 6 16 4.1044 4.3667 1.3879 7 8 4.2259 3.8964 2.7232 8 8 3.6126 5.6591 1.0608 9 7 5.6130 4.2561 0.7139 10 6 5.9457 5.0467 -0.3535 11 1 6.3679 4.6032 -1.2431 12 6 5.7403 6.4181 -0.2921 13 7 5.6845 7.0236 0.8753 14 14 5.5430 7.4045 -1.8661 15 1 5.3375 8.8363 -1.5306 16 1 6.7660 7.2617 -2.6963 17 1 4.3693 6.8995 -2.6229 18 6 6.5916 3.3124 1.2597 19 6 7.9931 3.3141 0.6459 20 6 7.0341 2.1554 0.3618 21 6 2.3070 3.4743 -0.5956 22 7 1.6801 2.3749 -0.9275 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.3190 1.4125 1.7359 29 1 5.6145 7.9902 0.9174 30 1 6.5107 3.1170 2.3290 31 1 8.1869 4.0172 -0.1641 32 1 8.8342 3.1196 1.3115 33 1 7.2448 1.1990 0.8404 34 1 6.5968 2.0961 -0.6349 35 1 2.2471 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066914582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = 19.277222 kcal Electronic energy + Delta-G solvation = -21339.699345 eV Core-core repulsion = 18081.217351 eV Total energy + Delta-G solvation = -3258.481994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13564 -38.66433 -37.54182 -36.06778 -35.42310 -34.97500 -32.33035 -31.52408 -30.37481 -26.69422 -24.89739 -23.00979 -22.75950 -22.09465 -21.67635 -20.56502 -19.11745 -18.10991 -17.58781 -16.96320 -16.56272 -16.44696 -15.97558 -15.46857 -15.44387 -15.10761 -14.79582 -14.01016 -13.90677 -13.58898 -13.39979 -13.05340 -13.03059 -12.85204 -12.73678 -12.47285 -12.39115 -12.25689 -12.09051 -12.04698 -11.98826 -11.52575 -11.33404 -10.88734 -10.50868 -10.46304 -10.00197 -9.20323 -8.30604 -6.01702 0.21800 0.70283 1.39594 1.50032 1.54961 1.58246 1.61597 2.40536 2.96765 3.10801 3.28260 3.41592 3.72597 3.75861 4.02048 4.04779 4.15626 4.28161 4.33176 4.40755 4.45882 4.53239 4.75637 4.82175 4.87381 4.97898 5.00589 5.17412 5.32635 5.44329 5.58517 5.59810 5.93703 5.98977 6.39946 6.47284 7.15675 7.57835 8.76209 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.007196 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.812195 B = 3889.861034 C = 4416.889586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -0.361 5.361 4 C 0.162 3.838 5 C -0.818 4.818 6 S 2.636 3.364 7 O -1.038 7.038 8 O -0.987 6.987 9 N -0.807 5.807 10 C -0.306 4.306 11 H 0.084 0.916 12 C 0.025 3.975 13 N -0.840 5.840 14 Si 0.968 3.032 15 H -0.287 1.287 16 H -0.253 1.253 17 H -0.268 1.268 18 C 0.056 3.944 19 C -0.158 4.158 20 C -0.183 4.183 21 C 0.115 3.885 22 N -0.317 5.317 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.132 0.868 28 H 0.212 0.788 29 H 0.274 0.726 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 -14.411 -2.405 14.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.009 4.009 3 N -0.141 5.141 4 C 0.009 3.991 5 C -0.913 4.913 6 S 2.736 3.264 7 O -1.028 7.028 8 O -0.976 6.976 9 N -0.631 5.631 10 C -0.448 4.448 11 H 0.102 0.898 12 C -0.188 4.188 13 N -0.476 5.476 14 Si 0.792 3.208 15 H -0.212 1.212 16 H -0.177 1.177 17 H -0.193 1.193 18 C -0.052 4.052 19 C -0.197 4.197 20 C -0.222 4.222 21 C -0.073 4.073 22 N -0.138 5.138 23 H 0.127 0.873 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.119 0.881 27 H 0.150 0.850 28 H 0.228 0.772 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.075 -14.555 -2.366 15.298 hybrid contribution 0.086 0.986 -0.356 1.052 sum -3.989 -13.569 -2.722 14.403 Atomic orbital electron populations 1.22035 0.93156 1.04448 1.02155 1.22314 0.96779 0.75337 1.06442 1.49586 1.33751 1.11274 1.19490 1.22755 0.90290 0.92056 0.93996 1.32534 1.27530 1.14230 1.17037 1.06289 0.73243 0.73301 0.73572 1.93255 1.87444 1.83432 1.38694 1.93374 1.80988 1.38708 1.84507 1.52161 1.20039 1.45862 1.45063 1.18912 1.44559 0.86887 0.94409 0.89809 1.26456 0.93803 0.98717 0.99785 1.69906 1.39573 1.10773 1.27305 0.85380 0.79675 0.76971 0.78821 1.21224 1.17684 1.19298 1.21630 0.93107 0.95038 0.95425 1.23091 0.92047 1.01013 1.03515 1.23355 1.04048 0.93758 1.01086 1.23475 0.92577 0.97546 0.93698 1.77158 1.24742 0.97318 1.14538 0.87293 0.93127 0.93069 0.88054 0.84989 0.77164 0.91647 0.87022 0.89103 0.87168 0.86404 0.89956 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.10 71.98 0.73 -1.92 16 2 C 0.11 1.95 7.23 86.38 0.62 2.58 16 3 N -0.36 -10.85 3.68 -348.06 -1.28 -12.13 16 4 C 0.16 5.41 11.19 83.54 0.93 6.34 16 5 C -0.82 -34.35 6.17 21.99 0.14 -34.21 16 6 S 2.64 132.94 5.59 -56.49 -0.32 132.62 16 7 O -1.04 -54.45 16.68 -128.00 -2.13 -56.58 16 8 O -0.99 -57.13 14.13 -128.00 -1.81 -58.94 16 9 N -0.81 -39.11 3.02 -322.95 -0.97 -40.09 16 10 C -0.31 -15.42 7.72 84.03 0.65 -14.77 16 11 H 0.08 4.00 7.64 -2.91 -0.02 3.98 16 12 C 0.03 1.33 4.04 84.86 0.34 1.67 16 13 N -0.84 -48.44 11.74 21.65 0.25 -48.19 16 14 Si 0.97 42.14 29.62 68.60 2.03 44.18 16 15 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.06 2.29 6.32 44.99 0.28 2.58 16 19 C -0.16 -5.47 9.83 30.62 0.30 -5.17 16 20 C -0.18 -5.80 10.36 30.62 0.32 -5.48 16 21 C 0.11 4.73 11.81 85.24 1.01 5.73 16 22 N -0.32 -11.67 12.42 -57.02 -0.71 -12.38 16 23 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.13 1.43 8.07 -2.39 -0.02 1.41 16 28 H 0.21 5.51 8.06 -2.91 -0.02 5.49 16 29 H 0.27 15.12 8.32 -92.71 -0.77 14.35 16 30 H 0.11 4.52 7.46 -2.39 -0.02 4.51 16 31 H 0.09 3.48 6.89 -2.39 -0.02 3.46 16 32 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.12 2.88 8.14 -2.39 -0.02 2.87 16 34 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.19 7.48 8.06 -2.91 -0.02 7.46 16 Total: -1.00 -73.68 314.46 1.48 -72.20 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.09 Total: 21.96 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 5.32 Total: -42.65 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.71 Total: -112.78 kcal Atomic # 8 Polarization: -111.58 SS G_CDS: -3.94 Total: -115.52 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 132.94 SS G_CDS: -0.32 Total: 132.62 kcal Total: -73.68 1.48 -72.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066914582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.477 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds