Wall clock time and date at job start Wed Apr 15 2020 11:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47022 * 240.00120 * 3 2 1 5 5 H 1.48500 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46935 * 120.00032 * 3 2 1 7 7 C 1.39908 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 175.58652 * 7 2 1 9 9 C 1.41136 * 120.00048 * 355.58527 * 7 2 1 10 10 C 1.40879 * 120.16291 * 214.77462 * 9 7 2 11 11 C 1.36353 * 119.83310 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16593 * 359.97438 * 11 10 9 13 13 N 1.39137 * 119.83601 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99542 * 35.31845 * 13 12 11 15 15 O 1.21574 * 120.00099 * 355.70990 * 14 13 12 16 16 C 1.47639 * 119.99379 * 175.71192 * 14 13 12 17 17 C 1.39684 * 120.17142 * 359.97438 * 16 14 13 18 18 C 1.37857 * 119.87718 * 180.02562 * 17 16 14 19 19 C 1.38459 * 120.21785 * 359.97438 * 18 17 16 20 20 C 1.38207 * 120.34869 * 0.02562 * 19 18 17 21 21 C 1.38317 * 120.11768 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11259 * 180.02562 * 21 20 19 23 23 C 1.39510 * 120.32947 * 0.27208 * 12 11 10 24 24 C 1.36366 * 120.16381 * 359.44815 * 23 12 11 25 25 H 0.97001 * 120.00273 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.07919 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91583 * 179.97438 * 11 10 9 28 28 H 0.96995 * 119.99700 * 215.31213 * 13 12 11 29 29 H 1.08004 * 120.06294 * 0.04033 * 17 16 14 30 30 H 1.07999 * 119.89012 * 180.27495 * 18 17 16 31 31 H 1.08002 * 119.82817 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.94524 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.91574 * 179.72468 * 23 12 11 34 34 H 1.07999 * 120.08067 * 180.26932 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2129 -0.0725 9 6 1.3058 -2.4321 0.0930 10 6 1.8650 -3.5188 0.7938 11 6 1.1806 -4.6951 0.8795 12 6 -0.0705 -4.8238 0.2758 13 7 -0.7630 -6.0271 0.3681 14 6 -0.6816 -6.7670 1.4916 15 8 0.0575 -6.4232 2.3937 16 6 -1.4899 -7.9951 1.6268 17 6 -2.3405 -8.3931 0.5928 18 6 -3.0929 -9.5405 0.7257 19 6 -3.0076 -10.2999 1.8804 20 6 -2.1690 -9.9147 2.9092 21 6 -1.4078 -8.7659 2.7909 22 9 -0.5876 -8.3897 3.7964 23 6 -0.6284 -3.7538 -0.4242 24 6 0.0417 -2.5695 -0.5136 25 1 -0.4850 0.8400 0.0004 26 1 2.8336 -3.4207 1.2613 27 1 1.6082 -5.5291 1.4161 28 1 -1.3045 -6.3332 -0.3762 29 1 -2.4085 -7.8030 -0.3092 30 1 -3.7473 -9.8508 -0.0755 31 1 -3.6002 -11.1975 1.9780 32 1 -2.1073 -10.5121 3.8068 33 1 -1.5954 -3.8623 -0.8928 34 1 -0.3933 -1.7407 -1.0522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000269647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:29 Heat of formation + Delta-G solvation = -28.889684 kcal Electronic energy + Delta-G solvation = -20793.510456 eV Core-core repulsion = 17377.575875 eV Total energy + Delta-G solvation = -3415.934581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.091 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -48.82050 -40.07037 -38.55987 -37.11896 -34.49942 -33.06152 -31.52524 -30.66712 -29.57907 -28.77061 -25.35810 -23.86116 -22.77478 -21.59748 -20.84006 -19.79926 -18.21375 -17.34830 -16.99666 -16.69206 -15.81908 -15.68749 -15.30882 -15.12061 -14.59247 -14.44566 -13.93261 -13.67504 -13.19144 -13.03976 -12.67882 -12.42519 -12.22834 -12.11209 -11.74466 -11.50123 -11.36110 -11.13045 -11.02439 -10.73456 -10.05695 -9.50919 -9.46669 -9.36279 -9.16297 -8.92817 -8.88714 -7.55455 -6.87190 -6.62388 -4.34732 0.57483 0.94144 2.58240 2.97483 3.08603 3.09813 3.12036 3.22258 3.54104 3.77173 3.97987 4.07146 4.44854 4.58312 4.69175 4.75339 4.99806 5.05790 5.45440 5.64645 5.75816 5.82455 5.90682 6.05779 6.18009 6.44432 6.57374 6.72843 6.90914 7.06008 7.19145 7.28857 7.63301 7.72073 7.85402 8.05332 8.22438 8.30836 8.60431 8.69997 8.91989 8.98915 10.28531 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040364 B = 0.003336 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.521889 B = 8391.781380 C = 8790.213552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.642 5.642 14 C 0.537 3.463 15 O -0.515 6.515 16 C -0.162 4.162 17 C -0.062 4.062 18 C -0.140 4.140 19 C -0.072 4.072 20 C -0.167 4.167 21 C 0.156 3.844 22 F -0.114 7.114 23 C -0.119 4.119 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.394 0.606 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 -16.028 -0.786 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.225 4.225 11 C -0.103 4.103 12 C -0.092 4.092 13 N -0.285 5.285 14 C 0.324 3.676 15 O -0.391 6.391 16 C -0.166 4.166 17 C -0.080 4.080 18 C -0.158 4.158 19 C -0.091 4.091 20 C -0.185 4.185 21 C 0.135 3.865 22 F -0.092 7.092 23 C -0.139 4.139 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.229 0.771 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.110 0.890 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.615 -15.578 -0.090 17.340 hybrid contribution 0.056 0.677 -0.070 0.683 sum -7.560 -14.901 -0.160 16.710 Atomic orbital electron populations 1.69753 1.07291 1.28850 1.37921 1.25889 0.94955 1.01186 0.92530 0.86237 0.79793 0.80054 0.79788 1.19036 1.20424 1.19077 1.19480 0.94750 0.90228 1.44641 0.90592 1.17730 0.92271 0.91988 0.88134 1.20809 1.01285 0.94896 1.05534 1.20416 0.92725 0.97913 0.99282 1.17246 0.94282 0.85660 1.11990 1.42834 1.48596 1.21298 1.15769 1.17992 0.83162 0.83492 0.82936 1.90828 1.38364 1.70260 1.39672 1.20290 1.02546 0.98102 0.95671 1.21285 0.93375 0.96077 0.97299 1.21144 1.00679 0.95404 0.98610 1.21169 0.96360 0.99122 0.92407 1.21166 0.99012 0.96766 1.01595 1.17764 0.90275 0.93481 0.84945 1.91608 1.69278 1.90747 1.57567 1.20308 0.98323 0.93078 1.02182 1.21189 0.97293 0.95519 1.02162 0.91058 0.88514 0.87424 0.77113 0.84604 0.84765 0.84695 0.84187 0.89036 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 10.59 55.55 0.59 -20.57 16 2 C 0.07 1.77 5.42 -17.33 -0.09 1.67 16 3 Si 0.92 19.09 29.56 -169.99 -5.03 14.06 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.35 9.02 -37.86 -0.34 -12.69 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.74 5.55 -106.80 -0.59 2.14 16 10 C -0.21 -5.28 9.74 -39.26 -0.38 -5.67 16 11 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 12 C 0.00 0.01 6.30 -83.60 -0.53 -0.52 16 13 N -0.64 -11.62 5.25 -10.65 -0.06 -11.67 16 14 C 0.54 10.15 7.60 -12.42 -0.09 10.06 16 15 O -0.51 -11.94 12.76 5.30 0.07 -11.87 16 16 C -0.16 -2.34 5.88 -104.92 -0.62 -2.96 16 17 C -0.06 -0.64 9.54 -39.18 -0.37 -1.01 16 18 C -0.14 -1.11 10.03 -39.64 -0.40 -1.51 16 19 C -0.07 -0.56 10.03 -39.51 -0.40 -0.95 16 20 C -0.17 -1.66 10.01 -39.56 -0.40 -2.06 16 21 C 0.16 2.20 7.29 -38.95 -0.28 1.92 16 22 F -0.11 -1.94 15.55 2.25 0.04 -1.90 16 23 C -0.12 -2.72 9.90 -39.78 -0.39 -3.11 16 24 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 25 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 26 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 27 H 0.11 2.64 6.22 -52.49 -0.33 2.31 16 28 H 0.39 5.44 6.86 -40.82 -0.28 5.16 16 29 H 0.14 1.10 6.41 -52.48 -0.34 0.77 16 30 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -31.84 300.62 -8.36 -40.20 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -2.93 Total: 8.29 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -5.57 Total: -21.06 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.53 Total: -32.24 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.84 -8.36 -40.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.310 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds