Wall clock time and date at job start Wed Apr 15 2020 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47022 * 240.00120 * 3 2 1 5 5 H 1.48500 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46935 * 120.00032 * 3 2 1 7 7 C 1.39908 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 175.58652 * 7 2 1 9 9 C 1.41136 * 120.00048 * 355.58527 * 7 2 1 10 10 C 1.40879 * 120.16291 * 214.77462 * 9 7 2 11 11 C 1.36353 * 119.83310 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16593 * 359.97438 * 11 10 9 13 13 N 1.39137 * 119.83601 * 180.02562 * 12 11 10 14 14 C 1.34783 * 119.99542 * 35.31845 * 13 12 11 15 15 O 1.21574 * 120.00099 * 355.70990 * 14 13 12 16 16 C 1.47639 * 119.99379 * 175.71192 * 14 13 12 17 17 C 1.39684 * 120.17142 * 359.97438 * 16 14 13 18 18 C 1.37857 * 119.87718 * 180.02562 * 17 16 14 19 19 C 1.38459 * 120.21785 * 359.97438 * 18 17 16 20 20 C 1.38207 * 120.34869 * 0.02562 * 19 18 17 21 21 C 1.38317 * 120.11768 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.11259 * 180.02562 * 21 20 19 23 23 C 1.39510 * 120.32947 * 0.27208 * 12 11 10 24 24 C 1.36366 * 120.16381 * 359.44815 * 23 12 11 25 25 H 0.97001 * 120.00273 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.07919 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.91583 * 179.97438 * 11 10 9 28 28 H 0.96995 * 119.99700 * 215.31213 * 13 12 11 29 29 H 1.08004 * 120.06294 * 0.04033 * 17 16 14 30 30 H 1.07999 * 119.89012 * 180.27495 * 18 17 16 31 31 H 1.08002 * 119.82817 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.94524 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.91574 * 179.72468 * 23 12 11 34 34 H 1.07999 * 120.08067 * 180.26932 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2129 -0.0725 9 6 1.3058 -2.4321 0.0930 10 6 1.8650 -3.5188 0.7938 11 6 1.1806 -4.6951 0.8795 12 6 -0.0705 -4.8238 0.2758 13 7 -0.7630 -6.0271 0.3681 14 6 -0.6816 -6.7670 1.4916 15 8 0.0575 -6.4232 2.3937 16 6 -1.4899 -7.9951 1.6268 17 6 -2.3405 -8.3931 0.5928 18 6 -3.0929 -9.5405 0.7257 19 6 -3.0076 -10.2999 1.8804 20 6 -2.1690 -9.9147 2.9092 21 6 -1.4078 -8.7659 2.7909 22 9 -0.5876 -8.3897 3.7964 23 6 -0.6284 -3.7538 -0.4242 24 6 0.0417 -2.5695 -0.5136 25 1 -0.4850 0.8400 0.0004 26 1 2.8336 -3.4207 1.2613 27 1 1.6082 -5.5291 1.4161 28 1 -1.3045 -6.3332 -0.3762 29 1 -2.4085 -7.8030 -0.3092 30 1 -3.7473 -9.8508 -0.0755 31 1 -3.6002 -11.1975 1.9780 32 1 -2.1073 -10.5121 3.8068 33 1 -1.5954 -3.8623 -0.8928 34 1 -0.3933 -1.7407 -1.0522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000269647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:28 Heat of formation + Delta-G solvation = -47.786324 kcal Electronic energy + Delta-G solvation = -20794.329876 eV Core-core repulsion = 17377.575875 eV Total energy + Delta-G solvation = -3416.754001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93366 -41.48307 -39.71616 -38.80704 -36.25404 -34.83876 -32.59248 -31.51908 -31.46206 -30.57720 -27.08066 -25.06586 -23.75633 -23.30099 -22.52153 -21.35033 -19.46967 -19.21940 -18.10682 -18.07060 -17.19208 -16.86501 -16.84556 -16.32663 -16.04304 -15.66627 -15.49520 -14.95130 -14.77297 -14.42883 -14.14065 -14.04597 -13.64497 -13.29021 -13.25318 -13.00583 -12.89607 -12.77600 -12.49796 -12.27750 -11.81329 -11.43080 -11.25917 -10.90226 -10.66993 -10.18640 -9.79111 -9.50861 -8.77315 -8.52702 -6.35720 -0.35573 0.16719 0.80989 1.10607 1.39053 1.47853 1.51330 1.84030 2.16155 2.23828 2.67207 2.80205 3.19315 3.54901 3.65218 3.73786 3.99765 4.27746 4.30147 4.36185 4.47642 4.72952 4.88336 5.00351 5.01502 5.09296 5.12201 5.22594 5.29715 5.34959 5.39015 5.66265 5.81657 5.86843 5.97822 6.09891 6.35303 6.59569 6.64878 6.93835 6.95760 7.25989 8.40009 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040364 B = 0.003336 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.521889 B = 8391.781380 C = 8790.213552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.070 3.930 10 C -0.222 4.222 11 C -0.098 4.098 12 C 0.015 3.985 13 N -0.633 5.633 14 C 0.535 3.465 15 O -0.569 6.569 16 C -0.192 4.192 17 C -0.058 4.058 18 C -0.126 4.126 19 C -0.052 4.052 20 C -0.164 4.164 21 C 0.117 3.883 22 F -0.145 7.145 23 C -0.114 4.114 24 C -0.158 4.158 25 H 0.286 0.714 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.418 0.582 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.130 0.870 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -18.077 -2.056 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.529 4.529 8 H 0.091 0.909 9 C 0.068 3.932 10 C -0.242 4.242 11 C -0.118 4.118 12 C -0.079 4.079 13 N -0.278 5.278 14 C 0.324 3.676 15 O -0.449 6.449 16 C -0.196 4.196 17 C -0.076 4.076 18 C -0.143 4.143 19 C -0.069 4.069 20 C -0.182 4.182 21 C 0.097 3.903 22 F -0.123 7.123 23 C -0.134 4.134 24 C -0.178 4.178 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.257 0.743 29 H 0.175 0.825 30 H 0.195 0.805 31 H 0.198 0.802 32 H 0.178 0.822 33 H 0.148 0.852 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.361 -17.672 -1.396 20.533 hybrid contribution 0.740 1.035 0.327 1.314 sum -9.621 -16.638 -1.069 19.249 Atomic orbital electron populations 1.69810 1.08567 1.30153 1.38129 1.26754 0.95844 1.04313 0.91474 0.85139 0.78511 0.75480 0.79836 1.18095 1.19079 1.19151 1.19718 0.94912 0.91334 1.46890 0.90869 1.18039 0.93412 0.92563 0.89181 1.20915 1.01657 0.95491 1.06176 1.20506 0.93917 0.97424 0.99918 1.17314 0.93500 0.87261 1.09811 1.42690 1.48405 1.19833 1.16861 1.18778 0.82473 0.84383 0.81921 1.90794 1.40793 1.71881 1.41463 1.20045 1.04598 0.97056 0.97917 1.21596 0.92271 0.97190 0.96584 1.21678 0.99474 0.93590 0.99585 1.21772 0.94499 0.99763 0.90904 1.21494 0.98245 0.95189 1.03294 1.18342 0.91748 0.95577 0.84675 1.91523 1.70601 1.91350 1.58869 1.20573 0.99383 0.91864 1.01558 1.21196 0.97385 0.96459 1.02765 0.90338 0.88697 0.88008 0.74338 0.82484 0.80489 0.80216 0.82212 0.85239 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.60 10.59 21.82 0.23 -44.37 16 2 C 0.03 1.47 5.42 85.24 0.46 1.93 16 3 Si 0.99 39.56 29.56 68.60 2.03 41.58 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.50 -27.86 9.02 23.39 0.21 -27.65 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.07 3.98 5.55 -21.28 -0.12 3.86 16 10 C -0.22 -12.10 9.74 22.48 0.22 -11.88 16 11 C -0.10 -5.01 8.61 22.14 0.19 -4.82 16 12 C 0.01 0.66 6.30 38.60 0.24 0.91 16 13 N -0.63 -22.52 5.25 -305.87 -1.60 -24.12 16 14 C 0.53 20.54 7.60 86.73 0.66 21.20 16 15 O -0.57 -27.82 12.76 -3.95 -0.05 -27.87 16 16 C -0.19 -5.40 5.88 -20.06 -0.12 -5.52 16 17 C -0.06 -0.99 9.54 22.53 0.21 -0.77 16 18 C -0.13 -1.27 10.03 22.23 0.22 -1.05 16 19 C -0.05 -0.51 10.03 22.32 0.22 -0.29 16 20 C -0.16 -2.80 10.01 22.28 0.22 -2.58 16 21 C 0.12 3.27 7.29 22.68 0.17 3.44 16 22 F -0.14 -5.23 15.55 44.97 0.70 -4.53 16 23 C -0.11 -5.18 9.90 22.14 0.22 -4.96 16 24 C -0.16 -8.35 8.61 22.48 0.19 -8.16 16 25 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 26 H 0.09 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.10 5.29 6.22 -2.91 -0.02 5.28 16 28 H 0.42 10.60 6.86 -92.71 -0.64 9.96 16 29 H 0.16 1.88 6.41 -2.91 -0.02 1.86 16 30 H 0.18 0.41 8.06 -2.91 -0.02 0.38 16 31 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 32 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.12 6.66 6.13 -2.91 -0.02 6.65 16 Total: -1.00 -75.91 300.62 5.04 -70.87 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.52 Total: 24.78 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 3.21 Total: -36.34 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.37 Total: -68.50 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.70 Total: -4.53 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -75.91 5.04 -70.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.086 kcal (2) G-P(sol) polarization free energy of solvation -75.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds