Wall clock time and date at job start Wed Apr 15 2020 11:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47457 * 300.00629 * 3 2 1 6 6 H 1.48508 * 109.47052 * 60.00522 * 3 2 1 7 7 C 1.38807 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 163.56340 * 7 2 1 9 9 N 1.36936 * 120.00150 * 343.56306 * 7 2 1 10 10 C 1.47068 * 120.87075 * 156.69553 * 9 7 2 11 11 C 1.53192 * 108.56713 * 115.11362 * 10 9 7 12 12 C 1.51403 * 109.06555 * 45.55846 * 11 10 9 13 13 S 1.75900 * 125.06350 * 162.18063 * 12 11 10 14 14 C 1.75711 * 91.11395 * 179.74384 * 13 12 11 15 15 C 1.32916 * 109.59158 * 359.78742 * 14 13 12 16 16 C 1.34652 * 125.09759 * 341.80470 * 12 11 10 17 17 C 1.46976 * 120.86911 * 336.72080 * 9 7 2 18 18 H 1.08999 * 109.79895 * 344.63304 * 17 9 7 19 19 C 1.50699 * 109.80052 * 105.49351 * 17 9 7 20 20 C 1.38229 * 119.99859 * 8.88758 * 19 17 9 21 21 C 1.38233 * 120.00027 * 179.76874 * 20 19 17 22 22 C 1.38238 * 120.00036 * 0.50252 * 21 20 19 23 23 C 1.38235 * 119.99574 * 359.75026 * 22 21 20 24 24 C 1.38234 * 120.00338 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99840 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.62040 * 234.83748 * 10 9 7 27 27 H 1.08994 * 109.62055 * 355.20470 * 10 9 7 28 28 H 1.08998 * 109.53839 * 165.42753 * 11 10 9 29 29 H 1.08991 * 109.53918 * 285.59759 * 11 10 9 30 30 H 1.08003 * 125.20204 * 180.02562 * 14 13 12 31 31 H 1.08003 * 122.17550 * 180.28554 * 15 14 13 32 32 H 1.08004 * 120.00344 * 359.97438 * 20 19 17 33 33 H 1.08004 * 120.00462 * 180.23238 * 21 20 19 34 34 H 1.08002 * 120.00277 * 179.72352 * 22 21 20 35 35 H 1.08007 * 119.99873 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.00389 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2211 -0.2652 9 7 1.3676 -2.3639 0.3345 10 6 1.8746 -3.6660 -0.1242 11 6 2.3160 -4.4760 1.0989 12 6 1.2515 -4.3731 2.1706 13 16 1.0922 -5.4601 3.5443 14 6 -0.3036 -4.5687 4.1316 15 6 -0.5607 -3.5535 3.3130 16 6 0.2897 -3.4319 2.2188 17 6 0.1528 -2.3423 1.1615 18 1 0.0520 -1.3702 1.6442 19 6 -1.0548 -2.6140 0.3019 20 6 -0.8925 -3.0153 -1.0109 21 6 -2.0002 -3.2692 -1.7980 22 6 -3.2702 -3.1118 -1.2754 23 6 -3.4325 -2.7055 0.0359 24 6 -2.3249 -2.4571 0.8247 25 1 -0.4850 0.8400 0.0004 26 1 1.0850 -4.2010 -0.6519 27 1 2.7229 -3.5141 -0.7915 28 1 2.4486 -5.5203 0.8161 29 1 3.2571 -4.0788 1.4789 30 1 -0.8642 -4.8068 5.0235 31 1 -1.3770 -2.8678 3.4860 32 1 0.0997 -3.1337 -1.4207 33 1 -1.8734 -3.5864 -2.8226 34 1 -4.1357 -3.3059 -1.8916 35 1 -4.4248 -2.5821 0.4442 36 1 -2.4516 -2.1392 1.8491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024945892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:36 Heat of formation + Delta-G solvation = 93.491762 kcal Electronic energy + Delta-G solvation = -20575.883328 eV Core-core repulsion = 17731.468781 eV Total energy + Delta-G solvation = -2844.414547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.23221 -37.36380 -35.27334 -32.60088 -31.18322 -30.03380 -29.42422 -27.97258 -25.31766 -23.28098 -23.01808 -21.49028 -20.81633 -20.07032 -17.54879 -17.27235 -16.23425 -15.45861 -15.11921 -14.63883 -14.22490 -14.08766 -13.70704 -13.51611 -13.09417 -12.69928 -12.43950 -12.26561 -12.16815 -11.87821 -11.43330 -11.18779 -11.10007 -10.85649 -10.74603 -10.50953 -10.30977 -10.27615 -10.04497 -9.88640 -9.68606 -8.70254 -8.03259 -7.95334 -7.68378 -7.56455 -6.91332 -5.84817 -3.27320 1.56218 2.13759 2.34374 2.39744 2.54258 3.32791 3.35229 3.43274 3.44309 4.42038 4.79179 5.18670 5.36170 5.37517 5.53322 5.69302 5.71941 5.82725 5.86552 5.94259 5.97521 6.14739 6.20996 6.28717 6.46341 6.54778 6.56302 6.71938 6.78153 6.91190 6.96799 6.99756 7.04397 7.33344 7.37390 7.48972 7.71935 7.80295 8.00194 8.27751 9.09042 9.71174 10.25345 11.21792 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.008803 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.989786 B = 3179.914874 C = 4346.481234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.582 5.582 10 C 0.137 3.863 11 C -0.066 4.066 12 C -0.152 4.152 13 S 0.033 5.967 14 C -0.226 4.226 15 C -0.111 4.111 16 C -0.108 4.108 17 C 0.287 3.713 18 H 0.118 0.882 19 C -0.003 4.003 20 C -0.092 4.092 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.130 4.130 24 C -0.122 4.122 25 H 0.255 0.745 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -8.503 3.298 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.302 5.302 10 C 0.009 3.991 11 C -0.108 4.108 12 C -0.268 4.268 13 S 0.298 5.702 14 C -0.361 4.361 15 C -0.143 4.143 16 C -0.121 4.121 17 C 0.177 3.823 18 H 0.135 0.865 19 C -0.006 4.006 20 C -0.110 4.110 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.148 4.148 24 C -0.141 4.141 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.381 -9.624 3.830 10.450 hybrid contribution -0.561 2.254 -0.340 2.347 sum -1.942 -7.370 3.490 8.383 Atomic orbital electron populations 1.70015 1.04772 1.25479 1.53188 1.24963 0.95387 0.98200 1.00723 0.86241 0.79321 0.84052 0.77234 1.20368 1.21781 1.21606 1.19182 0.92778 0.84212 1.42510 0.90981 1.44076 1.28176 1.01279 1.56640 1.21194 0.97849 0.87379 0.92675 1.20877 0.95310 0.99904 0.94688 1.24600 1.03004 0.99159 1.00087 1.83825 1.29573 1.34372 1.22453 1.25090 1.03201 1.02167 1.05661 1.20082 1.00804 0.98702 0.94687 1.20614 0.94914 0.98843 0.97729 1.18296 0.83807 0.94132 0.86102 0.86487 1.20168 0.94175 0.91692 0.94533 1.21150 0.98515 0.97498 0.93871 1.20993 0.93115 1.02101 0.98883 1.20782 0.96526 1.03726 0.95703 1.20826 0.97664 1.01797 0.94559 1.20770 0.92502 1.01664 0.99141 0.93450 0.94266 0.91555 0.91861 0.90868 0.82662 0.84912 0.85465 0.87786 0.87925 0.87786 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 10.05 55.49 0.56 -23.35 16 2 C 0.01 0.17 4.98 -17.43 -0.09 0.08 16 3 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -6.58 9.66 -15.06 -0.15 -6.73 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.58 -13.47 1.92 -166.38 -0.32 -13.79 16 10 C 0.14 2.67 5.53 -3.63 -0.02 2.65 16 11 C -0.07 -1.16 6.43 -27.44 -0.18 -1.33 16 12 C -0.15 -2.84 6.39 -35.23 -0.23 -3.06 16 13 S 0.03 0.52 23.31 -107.50 -2.51 -1.98 16 14 C -0.23 -3.52 11.20 28.89 0.32 -3.19 16 15 C -0.11 -1.96 9.38 -41.09 -0.39 -2.34 16 16 C -0.11 -2.17 5.15 -104.70 -0.54 -2.71 16 17 C 0.29 6.46 2.01 -69.11 -0.14 6.32 16 18 H 0.12 3.02 6.24 -51.93 -0.32 2.69 16 19 C 0.00 -0.07 3.98 -104.63 -0.42 -0.49 16 20 C -0.09 -1.99 8.42 -39.59 -0.33 -2.33 16 21 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 22 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.12 -2.44 9.17 -39.58 -0.36 -2.81 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 27 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.13 2.15 6.97 -52.48 -0.37 1.78 16 32 H 0.13 2.84 4.90 -52.48 -0.26 2.58 16 33 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 36 H 0.11 1.95 6.86 -52.49 -0.36 1.59 16 LS Contribution 301.88 15.07 4.55 4.55 Total: -1.00 -27.42 301.88 -10.54 -37.96 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.10 Total: 5.42 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -3.70 Total: -24.75 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.24 Total: -37.14 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.51 Total: -1.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.42 -10.54 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024945892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.456 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds