Wall clock time and date at job start Wed Apr 15 2020 11:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48500 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47457 * 300.00629 * 3 2 1 6 6 H 1.48508 * 109.47052 * 60.00522 * 3 2 1 7 7 C 1.38807 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00097 * 163.56340 * 7 2 1 9 9 N 1.36936 * 120.00150 * 343.56306 * 7 2 1 10 10 C 1.47068 * 120.87075 * 156.69553 * 9 7 2 11 11 C 1.53192 * 108.56713 * 115.11362 * 10 9 7 12 12 C 1.51403 * 109.06555 * 45.55846 * 11 10 9 13 13 S 1.75900 * 125.06350 * 162.18063 * 12 11 10 14 14 C 1.75711 * 91.11395 * 179.74384 * 13 12 11 15 15 C 1.32916 * 109.59158 * 359.78742 * 14 13 12 16 16 C 1.34652 * 125.09759 * 341.80470 * 12 11 10 17 17 C 1.46976 * 120.86911 * 336.72080 * 9 7 2 18 18 H 1.08999 * 109.79895 * 344.63304 * 17 9 7 19 19 C 1.50699 * 109.80052 * 105.49351 * 17 9 7 20 20 C 1.38229 * 119.99859 * 8.88758 * 19 17 9 21 21 C 1.38233 * 120.00027 * 179.76874 * 20 19 17 22 22 C 1.38238 * 120.00036 * 0.50252 * 21 20 19 23 23 C 1.38235 * 119.99574 * 359.75026 * 22 21 20 24 24 C 1.38234 * 120.00338 * 359.97438 * 23 22 21 25 25 H 0.96995 * 119.99840 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.62040 * 234.83748 * 10 9 7 27 27 H 1.08994 * 109.62055 * 355.20470 * 10 9 7 28 28 H 1.08998 * 109.53839 * 165.42753 * 11 10 9 29 29 H 1.08991 * 109.53918 * 285.59759 * 11 10 9 30 30 H 1.08003 * 125.20204 * 180.02562 * 14 13 12 31 31 H 1.08003 * 122.17550 * 180.28554 * 15 14 13 32 32 H 1.08004 * 120.00344 * 359.97438 * 20 19 17 33 33 H 1.08004 * 120.00462 * 180.23238 * 21 20 19 34 34 H 1.08002 * 120.00277 * 179.72352 * 22 21 20 35 35 H 1.08007 * 119.99873 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.00389 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2211 -0.2652 9 7 1.3676 -2.3639 0.3345 10 6 1.8746 -3.6660 -0.1242 11 6 2.3160 -4.4760 1.0989 12 6 1.2515 -4.3731 2.1706 13 16 1.0922 -5.4601 3.5443 14 6 -0.3036 -4.5687 4.1316 15 6 -0.5607 -3.5535 3.3130 16 6 0.2897 -3.4319 2.2188 17 6 0.1528 -2.3423 1.1615 18 1 0.0520 -1.3702 1.6442 19 6 -1.0548 -2.6140 0.3019 20 6 -0.8925 -3.0153 -1.0109 21 6 -2.0002 -3.2692 -1.7980 22 6 -3.2702 -3.1118 -1.2754 23 6 -3.4325 -2.7055 0.0359 24 6 -2.3249 -2.4571 0.8247 25 1 -0.4850 0.8400 0.0004 26 1 1.0850 -4.2010 -0.6519 27 1 2.7229 -3.5141 -0.7915 28 1 2.4486 -5.5203 0.8161 29 1 3.2571 -4.0788 1.4789 30 1 -0.8642 -4.8068 5.0235 31 1 -1.3770 -2.8678 3.4860 32 1 0.0997 -3.1337 -1.4207 33 1 -1.8734 -3.5864 -2.8226 34 1 -4.1357 -3.3059 -1.8916 35 1 -4.4248 -2.5821 0.4442 36 1 -2.4516 -2.1392 1.8491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024945892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:35 Heat of formation + Delta-G solvation = 81.936128 kcal Electronic energy + Delta-G solvation = -20576.384418 eV Core-core repulsion = 17731.468781 eV Total energy + Delta-G solvation = -2844.915637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75424 -38.81452 -36.83936 -34.29387 -32.80057 -31.54931 -31.06431 -29.43912 -27.07113 -24.85295 -24.48563 -23.05638 -22.29936 -21.60372 -19.10664 -18.85112 -17.76162 -16.94987 -16.78626 -16.11485 -15.87623 -15.69894 -15.26204 -15.05834 -14.58672 -14.17506 -13.96512 -13.77390 -13.64511 -13.36494 -13.03815 -12.89890 -12.68104 -12.60483 -12.21327 -12.08464 -12.01419 -11.85913 -11.62301 -11.51103 -11.26406 -10.61191 -9.48759 -9.32236 -9.12040 -9.03405 -8.73765 -7.80449 -5.23118 0.21861 0.79190 0.83676 0.95078 1.18164 1.45808 1.49800 1.57426 1.92857 2.52190 3.26155 3.34171 3.59266 4.00421 4.19198 4.26300 4.34322 4.41697 4.45411 4.47015 4.59019 4.71092 4.78293 4.86290 5.00638 5.03178 5.08865 5.22740 5.32518 5.33757 5.46808 5.52445 5.58072 5.69311 5.82764 5.86605 5.95427 6.22549 6.36846 6.49215 7.17312 7.85375 8.37745 9.22979 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.012638 B = 0.008803 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.989786 B = 3179.914874 C = 4346.481234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.039 4.039 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.135 3.865 11 C -0.060 4.060 12 C -0.179 4.179 13 S 0.089 5.911 14 C -0.212 4.212 15 C -0.136 4.136 16 C -0.130 4.130 17 C 0.292 3.708 18 H 0.074 0.926 19 C -0.019 4.019 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.148 4.148 23 C -0.129 4.129 24 C -0.138 4.138 25 H 0.246 0.754 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.191 0.809 31 H 0.137 0.863 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 -10.199 4.065 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.236 4.236 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.392 4.392 8 H 0.087 0.913 9 N -0.316 5.316 10 C 0.008 3.992 11 C -0.101 4.101 12 C -0.296 4.296 13 S 0.353 5.647 14 C -0.347 4.347 15 C -0.166 4.166 16 C -0.143 4.143 17 C 0.182 3.818 18 H 0.092 0.908 19 C -0.021 4.021 20 C -0.137 4.137 21 C -0.157 4.157 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.157 4.157 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.208 0.792 31 H 0.155 0.845 32 H 0.128 0.872 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.099 -11.349 4.600 12.425 hybrid contribution -0.341 2.686 -0.548 2.763 sum -2.441 -8.663 4.052 9.870 Atomic orbital electron populations 1.70185 1.05583 1.25005 1.54504 1.25527 0.96071 1.00418 1.01546 0.85394 0.78649 0.81082 0.76354 1.19650 1.22405 1.22270 1.19401 0.92819 0.85473 1.41510 0.91291 1.44199 1.28522 1.01723 1.57203 1.21282 0.97749 0.86260 0.93867 1.20785 0.94836 1.01012 0.93510 1.24837 1.02867 1.00076 1.01812 1.83581 1.28855 1.32333 1.19884 1.25552 1.02692 1.00663 1.05800 1.20106 1.01425 1.00202 0.94914 1.20535 0.96608 0.98936 0.98218 1.17986 0.84004 0.93118 0.86658 0.90797 1.20188 0.94631 0.92609 0.94665 1.21154 0.98664 0.99517 0.94389 1.21290 0.93131 1.01599 0.99711 1.21188 0.97088 1.02388 0.95972 1.21224 0.98525 1.00366 0.94598 1.20970 0.92623 1.02168 0.99916 0.94481 0.94323 0.91295 0.89055 0.91003 0.79163 0.84489 0.87197 0.85701 0.84436 0.84598 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.67 10.05 21.65 0.22 -50.45 16 2 C -0.04 -2.08 4.98 84.86 0.42 -1.66 16 3 Si 0.96 44.43 29.58 68.60 2.03 46.46 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.26 -13.83 9.66 84.03 0.81 -13.02 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 9 N -0.60 -28.53 1.92 -680.31 -1.30 -29.83 16 10 C 0.14 5.38 5.53 86.34 0.48 5.85 16 11 C -0.06 -2.06 6.43 30.14 0.19 -1.87 16 12 C -0.18 -6.53 6.39 25.09 0.16 -6.37 16 13 S 0.09 2.55 23.31 -56.49 -1.32 1.23 16 14 C -0.21 -6.01 11.20 66.65 0.75 -5.27 16 15 C -0.14 -4.67 9.38 21.31 0.20 -4.47 16 16 C -0.13 -5.25 5.15 -19.91 -0.10 -5.35 16 17 C 0.29 13.65 2.01 43.97 0.09 13.74 16 18 H 0.07 4.04 6.24 -2.39 -0.01 4.03 16 19 C -0.02 -0.83 3.98 -19.87 -0.08 -0.91 16 20 C -0.12 -5.25 8.42 22.27 0.19 -5.06 16 21 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 22 C -0.15 -5.03 10.05 22.27 0.22 -4.80 16 23 C -0.13 -4.50 10.05 22.27 0.22 -4.27 16 24 C -0.14 -5.55 9.17 22.27 0.20 -5.34 16 25 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 26 H 0.04 1.55 5.65 -2.39 -0.01 1.53 16 27 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.14 4.44 6.97 -2.91 -0.02 4.42 16 32 H 0.11 5.11 4.90 -2.91 -0.01 5.10 16 33 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.11 4.16 6.86 -2.91 -0.02 4.14 16 Total: -1.00 -60.47 301.88 4.70 -55.77 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 1.09 Total: 20.66 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 3.98 Total: -43.83 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.09 Total: -80.29 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Total: -60.47 4.70 -55.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024945892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.708 kcal (2) G-P(sol) polarization free energy of solvation -60.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds