Wall clock time and date at job start Wed Apr 15 2020 11:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00317 * 2 1 4 4 C 1.53003 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.35814 * 126.05082 * 124.99914 * 5 4 3 7 7 C 1.35755 * 107.56144 * 180.02562 * 6 5 4 8 8 N 1.40765 * 126.08137 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99854 * 179.97438 * 8 7 6 10 10 O 1.21303 * 120.00450 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72930 * 9 8 7 12 12 S 1.80997 * 109.47151 * 180.27780 * 11 9 8 13 13 C 1.76202 * 100.00066 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99989 * 179.97438 * 13 12 11 16 16 N 1.31633 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47272 * 59.99856 * 17 15 13 19 19 H 1.48501 * 109.46704 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46920 * 299.99977 * 17 15 13 21 21 C 1.40256 * 107.84136 * 0.24533 * 7 6 5 22 22 N 1.30835 * 108.33208 * 359.58580 * 21 7 6 23 23 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46950 * 300.00182 * 1 2 3 25 25 H 1.09002 * 109.46744 * 60.00106 * 1 2 3 26 26 H 1.08996 * 109.47232 * 59.99594 * 3 2 1 27 27 H 1.08998 * 109.46491 * 299.99557 * 3 2 1 28 28 H 1.09000 * 109.47117 * 59.99183 * 4 3 2 29 29 H 1.09000 * 109.46677 * 299.99664 * 4 3 2 30 30 H 1.07992 * 126.22132 * 0.06522 * 6 5 4 31 31 H 0.97001 * 119.99661 * 0.02562 * 8 7 6 32 32 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 33 33 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 34 34 H 0.96999 * 119.99741 * 179.97438 * 16 15 13 35 35 H 1.07995 * 125.83761 * 179.76181 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0323 2.9971 0.8977 7 6 5.3298 4.2738 0.5449 8 7 6.2236 5.1317 1.2131 9 6 6.4283 6.3821 0.7536 10 8 5.8419 6.7684 -0.2355 11 6 7.3806 7.3025 1.4725 12 16 7.4324 8.9001 0.6233 13 6 8.5861 9.7531 1.6461 14 1 9.0208 9.2559 2.5006 15 6 8.9371 11.0636 1.3529 16 7 8.4083 11.6691 0.3105 17 14 10.1607 11.9676 2.4368 18 1 11.4555 11.2405 2.4347 19 1 10.3646 13.3422 1.9131 20 1 9.6352 12.0387 3.8239 21 6 4.5834 4.5882 -0.6002 22 7 3.8725 3.5401 -0.9287 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 0.8899 27 1 1.6888 1.8462 -0.8900 28 1 3.8568 0.6437 -0.8908 29 1 3.8575 0.6435 0.8892 30 1 5.4386 2.4566 1.7397 31 1 6.6928 4.8226 2.0039 32 1 7.0415 7.4472 2.4984 33 1 8.3775 6.8617 1.4782 34 1 8.6533 12.5850 0.1059 35 1 4.5957 5.5330 -1.1233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058458802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:44 Heat of formation + Delta-G solvation = 3.451867 kcal Electronic energy + Delta-G solvation = -18883.082930 eV Core-core repulsion = 15623.914697 eV Total energy + Delta-G solvation = -3259.168233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35192 -39.10017 -38.32160 -34.75862 -33.47513 -32.44459 -30.26772 -29.73217 -27.82852 -26.41212 -25.48516 -23.70474 -21.79740 -21.20042 -19.80512 -17.84131 -17.63520 -16.80362 -16.65830 -16.25584 -15.74492 -15.49331 -15.18215 -14.81735 -14.57625 -14.12132 -13.83097 -13.65604 -13.34219 -12.83495 -12.60833 -12.54190 -12.18986 -11.99216 -11.76021 -11.06331 -11.05009 -10.80728 -10.78932 -10.60858 -10.15889 -9.85553 -9.45687 -9.44696 -9.07397 -8.27744 -7.69835 -6.52428 -6.23203 -3.94296 1.67570 2.11674 2.60704 3.00045 3.22729 3.26920 3.29990 3.31904 3.41239 3.66243 4.18494 4.32896 4.51946 4.67073 4.82353 4.90878 4.91189 4.98158 5.08945 5.12017 5.22624 5.26088 5.29804 5.52890 5.65021 5.70001 5.82399 6.07550 6.28207 6.56624 6.82973 6.97620 7.50961 7.57866 7.71395 8.33253 8.49291 9.22019 10.84094 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.064925 B = 0.002429 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.164389 B =11525.400860 C =11716.980695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.049 3.951 4 C 0.148 3.852 5 N -0.378 5.378 6 C 0.008 3.992 7 C 0.018 3.982 8 N -0.652 5.652 9 C 0.534 3.466 10 O -0.505 6.505 11 C -0.152 4.152 12 S -0.055 6.055 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.057 3.943 22 N -0.287 5.287 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.176 0.824 31 H 0.408 0.592 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.269 0.731 35 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -22.579 3.657 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.026 3.974 5 N -0.165 5.165 6 C -0.138 4.138 7 C -0.087 4.087 8 N -0.299 5.299 9 C 0.322 3.678 10 O -0.378 6.378 11 C -0.302 4.302 12 S 0.171 5.829 13 C -0.686 4.686 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.131 4.131 22 N -0.109 5.109 23 H 0.107 0.893 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.193 0.807 31 H 0.243 0.757 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.881 -22.506 1.095 25.474 hybrid contribution 2.127 0.512 2.942 3.666 sum -9.754 -21.995 4.037 24.397 Atomic orbital electron populations 1.22774 0.80058 1.02986 1.00430 1.87765 1.20505 1.27183 1.95625 1.22712 0.92906 0.85097 1.02112 1.21245 0.92190 0.79031 1.04952 1.48075 1.34811 1.11769 1.21858 1.21813 0.98720 0.94792 0.98487 1.17828 1.00993 0.91138 0.98724 1.42998 1.43596 1.12672 1.30648 1.20416 0.82273 0.80653 0.84487 1.90581 1.47725 1.74148 1.25313 1.23509 1.00260 1.02566 1.03901 1.85417 1.58602 1.00984 1.37894 1.22824 1.29609 1.00787 1.15345 0.90900 1.24995 0.96535 0.96435 0.95603 1.70004 1.41637 1.12912 1.25662 0.86217 0.80680 0.78467 0.80089 1.19934 1.20813 1.19934 1.24666 0.94069 0.98752 0.95612 1.77368 1.23956 0.96222 1.13342 0.89264 0.93846 0.93674 0.92642 0.91484 0.88992 0.87922 0.80695 0.75673 0.88878 0.88876 0.92086 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.34 10.70 -35.23 -0.38 -3.72 16 3 C 0.05 0.42 6.12 37.16 0.23 0.65 16 4 C 0.15 1.19 6.89 -4.04 -0.03 1.16 16 5 N -0.38 -4.28 3.70 -61.03 -0.23 -4.51 16 6 C 0.01 0.09 11.52 -16.68 -0.19 -0.11 16 7 C 0.02 0.25 6.90 -83.88 -0.58 -0.33 16 8 N -0.65 -8.76 5.47 -10.03 -0.05 -8.81 16 9 C 0.53 9.58 7.82 -10.98 -0.09 9.50 16 10 O -0.50 -10.78 13.02 5.54 0.07 -10.70 16 11 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 12 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 13 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 14 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 17 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.06 0.89 10.84 -17.22 -0.19 0.71 16 22 N -0.29 -4.20 12.41 30.70 0.38 -3.82 16 23 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 30 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.41 3.91 8.83 -40.82 -0.36 3.55 16 32 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.21 3.64 5.92 -52.49 -0.31 3.33 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -34.86 324.34 -5.57 -40.43 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.44 Total: 1.46 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.69 Total: -2.52 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.83 Total: -42.25 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.43 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.86 -5.57 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058458802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.880 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds