Wall clock time and date at job start Wed Apr 15 2020 11:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00317 * 2 1 4 4 C 1.53003 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.35814 * 126.05082 * 124.99914 * 5 4 3 7 7 C 1.35755 * 107.56144 * 180.02562 * 6 5 4 8 8 N 1.40765 * 126.08137 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99854 * 179.97438 * 8 7 6 10 10 O 1.21303 * 120.00450 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72930 * 9 8 7 12 12 S 1.80997 * 109.47151 * 180.27780 * 11 9 8 13 13 C 1.76202 * 100.00066 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.38802 * 119.99989 * 179.97438 * 13 12 11 16 16 N 1.31633 * 120.00063 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99961 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47272 * 59.99856 * 17 15 13 19 19 H 1.48501 * 109.46704 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46920 * 299.99977 * 17 15 13 21 21 C 1.40256 * 107.84136 * 0.24533 * 7 6 5 22 22 N 1.30835 * 108.33208 * 359.58580 * 21 7 6 23 23 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46950 * 300.00182 * 1 2 3 25 25 H 1.09002 * 109.46744 * 60.00106 * 1 2 3 26 26 H 1.08996 * 109.47232 * 59.99594 * 3 2 1 27 27 H 1.08998 * 109.46491 * 299.99557 * 3 2 1 28 28 H 1.09000 * 109.47117 * 59.99183 * 4 3 2 29 29 H 1.09000 * 109.46677 * 299.99664 * 4 3 2 30 30 H 1.07992 * 126.22132 * 0.06522 * 6 5 4 31 31 H 0.97001 * 119.99661 * 0.02562 * 8 7 6 32 32 H 1.09009 * 109.47352 * 300.27556 * 11 9 8 33 33 H 1.08998 * 109.47585 * 60.27844 * 11 9 8 34 34 H 0.96999 * 119.99741 * 179.97438 * 16 15 13 35 35 H 1.07995 * 125.83761 * 179.76181 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0323 2.9971 0.8977 7 6 5.3298 4.2738 0.5449 8 7 6.2236 5.1317 1.2131 9 6 6.4283 6.3821 0.7536 10 8 5.8419 6.7684 -0.2355 11 6 7.3806 7.3025 1.4725 12 16 7.4324 8.9001 0.6233 13 6 8.5861 9.7531 1.6461 14 1 9.0208 9.2559 2.5006 15 6 8.9371 11.0636 1.3529 16 7 8.4083 11.6691 0.3105 17 14 10.1607 11.9676 2.4368 18 1 11.4555 11.2405 2.4347 19 1 10.3646 13.3422 1.9131 20 1 9.6352 12.0387 3.8239 21 6 4.5834 4.5882 -0.6002 22 7 3.8725 3.5401 -0.9287 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8464 0.8899 27 1 1.6888 1.8462 -0.8900 28 1 3.8568 0.6437 -0.8908 29 1 3.8575 0.6435 0.8892 30 1 5.4386 2.4566 1.7397 31 1 6.6928 4.8226 2.0039 32 1 7.0415 7.4472 2.4984 33 1 8.3775 6.8617 1.4782 34 1 8.6533 12.5850 0.1059 35 1 4.5957 5.5330 -1.1233 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058458802.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:43 Heat of formation + Delta-G solvation = -22.974827 kcal Electronic energy + Delta-G solvation = -18884.228877 eV Core-core repulsion = 15623.914697 eV Total energy + Delta-G solvation = -3260.314180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.37475 -40.40150 -38.96186 -35.91391 -34.55796 -34.40428 -31.50731 -30.75555 -28.83655 -27.63137 -27.02346 -24.49817 -22.99635 -22.12772 -21.02078 -19.73629 -18.58412 -17.75131 -17.54279 -17.30565 -16.85273 -16.64722 -16.46122 -16.27069 -15.87374 -15.41692 -14.90848 -14.84753 -14.43631 -14.33025 -13.82136 -13.71049 -13.13895 -13.05663 -12.84556 -12.68944 -12.61146 -12.34158 -11.78639 -11.75954 -11.73483 -11.10285 -10.88871 -10.77265 -10.43286 -10.24687 -8.77351 -8.61113 -8.32126 -6.09748 0.72682 1.19012 1.33856 1.36571 1.46034 1.50980 1.60288 2.11254 2.27444 2.30955 2.77301 3.02103 3.33505 3.68345 3.83213 3.89998 4.04311 4.09110 4.24521 4.34293 4.37839 4.46190 4.51249 4.54341 4.61576 4.67065 4.79538 4.82415 5.14931 5.44642 5.74684 5.96622 6.08154 6.22231 6.45130 6.65223 7.09278 7.24658 8.76646 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.064925 B = 0.002429 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.164389 B =11525.400860 C =11716.980695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.054 3.946 4 C 0.142 3.858 5 N -0.370 5.370 6 C 0.050 3.950 7 C -0.018 4.018 8 N -0.625 5.625 9 C 0.533 3.467 10 O -0.549 6.549 11 C -0.125 4.125 12 S -0.149 6.149 13 C -0.546 4.546 14 H 0.086 0.914 15 C 0.012 3.988 16 N -0.912 5.912 17 Si 0.998 3.002 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.261 1.261 21 C 0.031 3.969 22 N -0.314 5.314 23 H 0.106 0.894 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.231 0.769 31 H 0.430 0.570 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.270 0.730 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.273 -25.312 6.509 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.022 3.978 5 N -0.156 5.156 6 C -0.098 4.098 7 C -0.123 4.123 8 N -0.273 5.273 9 C 0.320 3.680 10 O -0.426 6.426 11 C -0.276 4.276 12 S 0.078 5.922 13 C -0.694 4.694 14 H 0.104 0.896 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.820 3.180 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.186 1.186 21 C -0.156 4.156 22 N -0.137 5.137 23 H 0.125 0.875 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.159 0.841 30 H 0.247 0.753 31 H 0.269 0.731 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.034 -25.306 3.969 27.890 hybrid contribution 1.720 1.096 2.055 2.895 sum -9.313 -24.210 6.024 26.630 Atomic orbital electron populations 1.22967 0.78877 1.04294 1.00790 1.87742 1.21843 1.26915 1.95652 1.22587 0.93361 0.85141 1.01244 1.21593 0.91754 0.77406 1.07090 1.48453 1.34198 1.12070 1.20846 1.22567 0.95945 0.93212 0.98040 1.17954 1.02443 0.92650 0.99232 1.42512 1.43024 1.10967 1.30775 1.20173 0.81946 0.81913 0.84013 1.90597 1.49415 1.75333 1.27262 1.23309 1.02141 0.98339 1.03795 1.85625 1.59174 1.06719 1.40720 1.23191 1.29424 1.01281 1.15469 0.89639 1.26134 0.98610 0.97482 0.97051 1.70182 1.43514 1.13297 1.27835 0.85007 0.78048 0.76817 0.78145 1.18630 1.20643 1.18602 1.24354 0.95770 0.98415 0.97042 1.77322 1.24593 0.96934 1.14888 0.87541 0.93135 0.93714 0.92555 0.93433 0.88520 0.84095 0.75273 0.73089 0.86622 0.86646 0.92068 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -6.04 10.70 -148.98 -1.59 -7.63 16 3 C 0.05 0.83 6.12 71.98 0.44 1.27 16 4 C 0.14 1.83 6.89 86.38 0.59 2.42 16 5 N -0.37 -7.41 3.70 -347.00 -1.29 -8.70 16 6 C 0.05 0.85 11.52 83.50 0.96 1.82 16 7 C -0.02 -0.48 6.90 37.62 0.26 -0.22 16 8 N -0.62 -15.52 5.47 -304.04 -1.66 -17.19 16 9 C 0.53 19.02 7.82 87.66 0.69 19.71 16 10 O -0.55 -24.62 13.02 -3.10 -0.04 -24.66 16 11 C -0.12 -4.67 6.16 71.24 0.44 -4.23 16 12 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 13 C -0.55 -30.58 9.50 67.95 0.65 -29.93 16 14 H 0.09 4.39 7.80 -2.91 -0.02 4.36 16 15 C 0.01 0.67 5.49 84.86 0.47 1.14 16 16 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 17 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 C 0.03 0.99 10.84 85.33 0.92 1.92 16 22 N -0.31 -9.21 12.41 -56.77 -0.70 -9.91 16 23 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.14 0.81 8.07 -2.39 -0.02 0.79 16 30 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.43 6.62 8.83 -92.71 -0.82 5.80 16 32 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 33 H 0.12 3.81 8.14 -2.40 -0.02 3.79 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.18 6.86 5.92 -2.91 -0.02 6.85 16 Total: -1.00 -80.57 324.34 2.82 -77.75 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.29 Total: 14.62 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 6.67 Total: -4.59 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.37 Total: -91.29 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.63 Total: -32.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -80.57 2.82 -77.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058458802.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.774 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds