Wall clock time and date at job start Wed Apr 15 2020 11:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00270 * 2 1 4 4 C 1.52999 * 109.47120 * 269.99845 * 3 2 1 5 5 H 1.09005 * 109.46939 * 60.00066 * 4 3 2 6 6 O 1.42899 * 109.47278 * 300.00035 * 4 3 2 7 7 C 1.52999 * 109.47121 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46856 * 185.00251 * 7 4 3 9 9 C 1.36944 * 119.99845 * 179.72960 * 8 7 4 10 10 H 1.07999 * 119.99902 * 0.26960 * 9 8 7 11 11 C 1.38805 * 120.00200 * 180.27820 * 9 8 7 12 12 N 1.31623 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46644 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47287 * 119.99575 * 13 11 9 16 16 H 1.48506 * 109.46845 * 239.99543 * 13 11 9 17 17 C 1.34780 * 119.99654 * 179.97438 * 2 1 3 18 18 O 1.21619 * 119.99886 * 176.33665 * 17 2 1 19 19 C 1.47256 * 120.00099 * 356.33747 * 17 2 1 20 20 N 1.30560 * 125.54173 * 5.91305 * 19 17 2 21 21 C 1.30702 * 115.90776 * 179.77668 * 20 19 17 22 22 C 1.34233 * 115.78063 * 0.52219 * 21 20 19 23 23 S 1.71073 * 109.09263 * 359.72184 * 22 21 20 24 24 H 1.08997 * 109.47430 * 95.67150 * 1 2 3 25 25 H 1.08999 * 109.47610 * 215.67710 * 1 2 3 26 26 H 1.09010 * 109.46765 * 335.67240 * 1 2 3 27 27 H 1.08997 * 109.47269 * 149.99755 * 3 2 1 28 28 H 1.09000 * 109.46921 * 29.99846 * 3 2 1 29 29 H 0.96691 * 114.00038 * 300.00120 * 6 4 3 30 30 H 1.08997 * 109.47158 * 65.00516 * 7 4 3 31 31 H 1.09003 * 109.47350 * 305.00155 * 7 4 3 32 32 H 0.96996 * 120.00692 * 359.97438 * 8 7 4 33 33 H 0.97002 * 120.00379 * 180.02562 * 12 11 9 34 34 H 1.07997 * 122.11161 * 180.22010 * 21 20 19 35 35 H 1.08000 * 125.45310 * 179.71728 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5186 -2.8185 9 6 4.0060 4.6985 -3.0673 10 1 4.4186 5.2708 -2.2496 11 6 4.1335 5.1591 -4.3705 12 7 3.6310 4.4616 -5.3672 13 14 5.0183 6.7690 -4.7099 14 1 5.4865 7.3560 -3.4287 15 1 6.1840 6.5163 -5.5944 16 1 4.0870 7.7146 -5.3762 17 6 2.1388 -1.1673 0.0005 18 8 3.3532 -1.1684 -0.0668 19 6 1.4048 -2.4412 0.0826 20 7 0.1062 -2.5723 0.0491 21 6 -0.3466 -3.7956 0.1319 22 6 0.5840 -4.7557 0.2515 23 16 2.1353 -4.0347 0.2493 24 1 -0.3634 -0.1016 -1.0226 25 1 -0.3634 -0.8348 0.5993 26 1 -0.3633 0.9365 0.4234 27 1 3.1499 1.1383 0.5138 28 1 1.6085 2.0283 0.5138 29 1 4.0872 0.5459 -1.7126 30 1 4.2054 2.8850 -1.0081 31 1 2.6694 3.7711 -0.8532 32 1 2.9868 3.0046 -3.5530 33 1 3.7204 4.7832 -6.2779 34 1 -1.4029 -4.0195 0.1106 35 1 0.3850 -5.8139 0.3357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677125035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:18 Heat of formation + Delta-G solvation = -6.235387 kcal Electronic energy + Delta-G solvation = -20041.338232 eV Core-core repulsion = 16781.749928 eV Total energy + Delta-G solvation = -3259.588304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.54702 -39.26561 -37.20930 -35.26825 -33.94156 -31.46302 -30.94650 -29.21006 -27.14690 -26.53494 -24.94119 -22.89593 -21.64141 -21.04720 -19.77227 -18.27840 -17.11072 -16.94037 -16.49269 -16.14166 -15.55194 -15.08350 -14.90591 -14.48422 -14.28760 -13.76452 -13.57024 -13.46548 -12.94151 -12.87354 -12.63755 -12.33491 -12.07446 -11.73977 -11.43062 -10.90230 -10.79862 -10.66720 -10.46548 -10.08778 -10.01086 -9.80848 -9.72951 -9.57491 -9.24512 -8.85720 -8.47642 -6.87155 -5.70539 -2.99897 -0.02886 0.85185 1.40738 2.11364 2.90148 3.07938 3.46613 3.51534 3.54344 3.81715 4.58545 4.62258 4.74879 4.89630 5.00551 5.07940 5.21143 5.30894 5.52460 5.58838 5.66865 5.73464 5.78582 6.03087 6.05090 6.28772 6.46259 6.57486 6.79330 7.11247 7.24478 7.73426 7.97512 8.26976 8.47744 9.58925 10.17413 10.52978 11.51958 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040739 B = 0.003129 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.140954 B = 8945.193058 C = 9066.190112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.581 5.581 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.097 0.903 6 O -0.547 6.547 7 C 0.127 3.873 8 N -0.726 5.726 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 C 0.598 3.402 18 O -0.523 6.523 19 C -0.008 4.008 20 N -0.424 5.424 21 C 0.024 3.976 22 C -0.286 4.286 23 S 0.251 5.749 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.374 0.626 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.388 0.612 33 H 0.254 0.746 34 H 0.177 0.823 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -18.920 15.844 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.312 5.312 3 C -0.039 4.039 4 C 0.025 3.975 5 H 0.115 0.885 6 O -0.352 6.352 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.382 3.618 18 O -0.399 6.399 19 C -0.283 4.283 20 N -0.142 5.142 21 C -0.132 4.132 22 C -0.427 4.427 23 S 0.505 5.495 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.222 0.778 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.194 0.806 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.103 -18.649 15.476 25.553 hybrid contribution -0.449 0.503 -0.239 0.715 sum -8.552 -18.146 15.238 25.191 Atomic orbital electron populations 1.22340 0.78048 1.03713 1.03319 1.47439 1.07853 1.04989 1.70969 1.22422 0.98265 0.84009 0.99160 1.22493 0.95864 0.88348 0.90772 0.88539 1.86551 1.33107 1.58858 1.56725 1.21240 0.96793 0.92449 0.89754 1.42262 1.68274 1.25059 1.01444 1.19270 1.28165 0.97548 0.92223 0.91204 1.24766 1.01589 0.99033 0.95642 1.69697 1.50443 1.39087 0.98597 0.86113 0.78997 0.83308 0.77734 1.20578 1.21855 1.21890 1.16640 0.86091 0.81595 0.77524 1.90822 1.12394 1.86326 1.50376 1.27799 0.92414 0.98884 1.09171 1.67107 1.10656 1.23315 1.13148 1.21839 1.02164 0.86105 1.03114 1.26905 0.98134 1.06507 1.11154 1.84132 1.05961 0.98326 1.61047 0.92253 0.87952 0.91504 0.89273 0.89102 0.77817 0.96047 0.95741 0.77735 0.93578 0.80566 0.79985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.66 59.85 0.58 1.32 16 2 N -0.58 -7.71 2.83 -182.91 -0.52 -8.23 16 3 C 0.08 1.14 5.18 -4.04 -0.02 1.12 16 4 C 0.09 1.49 3.27 -26.73 -0.09 1.40 16 5 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 6 O -0.55 -10.70 12.02 -47.82 -0.57 -11.27 16 7 C 0.13 2.58 5.90 -4.04 -0.02 2.56 16 8 N -0.73 -19.25 5.55 -59.91 -0.33 -19.58 16 9 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 13 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 C 0.60 8.68 7.23 -12.59 -0.09 8.59 16 18 O -0.52 -8.72 15.11 -7.32 -0.11 -8.83 16 19 C -0.01 -0.10 7.20 -14.43 -0.10 -0.20 16 20 N -0.42 -4.60 7.00 -11.51 -0.08 -4.68 16 21 C 0.02 0.20 11.24 -19.44 -0.22 -0.02 16 22 C -0.29 -2.01 11.09 29.32 0.33 -1.68 16 23 S 0.25 2.33 23.04 -107.50 -2.48 -0.15 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.10 1.05 5.28 -51.93 -0.27 0.78 16 26 H 0.07 0.59 7.83 -51.92 -0.41 0.19 16 27 H 0.09 1.21 7.47 -51.93 -0.39 0.82 16 28 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 29 H 0.37 6.79 8.34 45.56 0.38 7.17 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.39 11.12 7.67 -40.82 -0.31 10.81 16 33 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -34.77 314.99 -7.02 -41.79 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.49 Total: 11.31 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 0.11 Total: 5.45 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.21 Total: -60.96 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.69 Total: -20.10 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.48 Total: -0.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.77 -7.02 -41.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677125035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.556 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds