Wall clock time and date at job start Wed Apr 15 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00270 * 2 1 4 4 C 1.52999 * 109.47120 * 269.99845 * 3 2 1 5 5 H 1.09005 * 109.46939 * 60.00066 * 4 3 2 6 6 O 1.42899 * 109.47278 * 300.00035 * 4 3 2 7 7 C 1.52999 * 109.47121 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.46856 * 185.00251 * 7 4 3 9 9 C 1.36944 * 119.99845 * 179.72960 * 8 7 4 10 10 H 1.07999 * 119.99902 * 0.26960 * 9 8 7 11 11 C 1.38805 * 120.00200 * 180.27820 * 9 8 7 12 12 N 1.31623 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46644 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47287 * 119.99575 * 13 11 9 16 16 H 1.48506 * 109.46845 * 239.99543 * 13 11 9 17 17 C 1.34780 * 119.99654 * 179.97438 * 2 1 3 18 18 O 1.21619 * 119.99886 * 176.33665 * 17 2 1 19 19 C 1.47256 * 120.00099 * 356.33747 * 17 2 1 20 20 N 1.30560 * 125.54173 * 5.91305 * 19 17 2 21 21 C 1.30702 * 115.90776 * 179.77668 * 20 19 17 22 22 C 1.34233 * 115.78063 * 0.52219 * 21 20 19 23 23 S 1.71073 * 109.09263 * 359.72184 * 22 21 20 24 24 H 1.08997 * 109.47430 * 95.67150 * 1 2 3 25 25 H 1.08999 * 109.47610 * 215.67710 * 1 2 3 26 26 H 1.09010 * 109.46765 * 335.67240 * 1 2 3 27 27 H 1.08997 * 109.47269 * 149.99755 * 3 2 1 28 28 H 1.09000 * 109.46921 * 29.99846 * 3 2 1 29 29 H 0.96691 * 114.00038 * 300.00120 * 6 4 3 30 30 H 1.08997 * 109.47158 * 65.00516 * 7 4 3 31 31 H 1.09003 * 109.47350 * 305.00155 * 7 4 3 32 32 H 0.96996 * 120.00692 * 359.97438 * 8 7 4 33 33 H 0.97002 * 120.00379 * 180.02562 * 12 11 9 34 34 H 1.07997 * 122.11161 * 180.22010 * 21 20 19 35 35 H 1.08000 * 125.45310 * 179.71728 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5186 -2.8185 9 6 4.0060 4.6985 -3.0673 10 1 4.4186 5.2708 -2.2496 11 6 4.1335 5.1591 -4.3705 12 7 3.6310 4.4616 -5.3672 13 14 5.0183 6.7690 -4.7099 14 1 5.4865 7.3560 -3.4287 15 1 6.1840 6.5163 -5.5944 16 1 4.0870 7.7146 -5.3762 17 6 2.1388 -1.1673 0.0005 18 8 3.3532 -1.1684 -0.0668 19 6 1.4048 -2.4412 0.0826 20 7 0.1062 -2.5723 0.0491 21 6 -0.3466 -3.7956 0.1319 22 6 0.5840 -4.7557 0.2515 23 16 2.1353 -4.0347 0.2493 24 1 -0.3634 -0.1016 -1.0226 25 1 -0.3634 -0.8348 0.5993 26 1 -0.3633 0.9365 0.4234 27 1 3.1499 1.1383 0.5138 28 1 1.6085 2.0283 0.5138 29 1 4.0872 0.5459 -1.7126 30 1 4.2054 2.8850 -1.0081 31 1 2.6694 3.7711 -0.8532 32 1 2.9868 3.0046 -3.5530 33 1 3.7204 4.7832 -6.2779 34 1 -1.4029 -4.0195 0.1106 35 1 0.3850 -5.8139 0.3357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677125035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:14 Heat of formation + Delta-G solvation = -33.031170 kcal Electronic energy + Delta-G solvation = -20042.500185 eV Core-core repulsion = 16781.749928 eV Total energy + Delta-G solvation = -3260.750256 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.093 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -41.44782 -40.17222 -38.63247 -36.46570 -35.86141 -33.23350 -32.02533 -30.56389 -28.03444 -27.83485 -26.26861 -24.58010 -22.86989 -22.27294 -20.64033 -19.23726 -19.09876 -17.94427 -17.72037 -17.18042 -16.65078 -16.54477 -16.14236 -15.95646 -15.61737 -15.02322 -14.78983 -14.55815 -14.29772 -14.13588 -13.89215 -13.68716 -13.35174 -12.96499 -12.80607 -12.62088 -12.37883 -12.14551 -12.02537 -11.82699 -11.54326 -11.10945 -10.98474 -10.70240 -10.59258 -9.99525 -9.57505 -9.01827 -7.94820 -5.25136 -0.78271 0.11881 0.74714 1.34091 1.46569 1.48544 1.58621 1.95318 2.15034 2.55591 3.01031 3.36708 3.50888 3.74133 3.86052 4.06558 4.19371 4.30096 4.34795 4.41426 4.49445 4.53954 4.69443 4.78300 4.92493 4.97678 5.22142 5.23628 5.46080 5.50025 6.18037 6.25831 6.45621 6.81323 6.96674 7.31940 8.07954 8.30810 9.28975 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040739 B = 0.003129 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.140954 B = 8945.193058 C = 9066.190112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.584 5.584 3 C 0.095 3.905 4 C 0.095 3.905 5 H 0.086 0.914 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.743 5.743 9 C -0.246 4.246 10 H 0.079 0.921 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.295 1.295 16 H -0.291 1.291 17 C 0.589 3.411 18 O -0.558 6.558 19 C -0.054 4.054 20 N -0.427 5.427 21 C 0.007 3.993 22 C -0.256 4.256 23 S 0.256 5.744 24 H 0.047 0.953 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.377 0.623 30 H 0.026 0.974 31 H 0.044 0.956 32 H 0.373 0.627 33 H 0.251 0.749 34 H 0.208 0.792 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -19.630 17.482 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.314 5.314 3 C -0.029 4.029 4 C 0.035 3.965 5 H 0.104 0.896 6 O -0.373 6.373 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.097 0.903 11 C -0.272 4.272 12 N -0.622 5.622 13 Si 0.807 3.193 14 H -0.187 1.187 15 H -0.222 1.222 16 H -0.218 1.218 17 C 0.375 3.625 18 O -0.436 6.436 19 C -0.327 4.327 20 N -0.147 5.147 21 C -0.149 4.149 22 C -0.396 4.396 23 S 0.509 5.491 24 H 0.065 0.935 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.226 0.774 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.224 0.776 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -9.083 -19.348 17.176 27.420 hybrid contribution -0.218 0.555 -0.686 0.909 sum -9.301 -18.793 16.490 26.676 Atomic orbital electron populations 1.22435 0.76596 1.05282 1.02882 1.47545 1.08751 1.04605 1.70532 1.22268 0.99207 0.85117 0.96297 1.22414 0.94412 0.86581 0.93104 0.89613 1.86522 1.33596 1.59411 1.57817 1.21443 0.97623 0.94286 0.86899 1.42497 1.68075 1.24544 1.03412 1.19723 1.27294 0.98168 0.92578 0.90264 1.25671 1.03138 1.02828 0.95577 1.69871 1.52456 1.41117 0.98768 0.85001 0.77366 0.78987 0.77940 1.18699 1.22180 1.21849 1.17056 0.86010 0.82687 0.76762 1.90781 1.13788 1.87040 1.52023 1.27429 0.93157 0.99020 1.13051 1.67059 1.10175 1.25021 1.12396 1.22343 1.03812 0.85370 1.03334 1.27380 0.96375 1.08071 1.07814 1.84125 1.07430 0.97123 1.60399 0.93461 0.87259 0.89265 0.89380 0.85977 0.77441 0.95650 0.93852 0.79536 0.94052 0.77593 0.76261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 9.66 127.77 1.23 2.67 16 2 N -0.58 -15.22 2.83 -850.86 -2.41 -17.62 16 3 C 0.09 2.46 5.18 86.38 0.45 2.91 16 4 C 0.10 3.30 3.27 30.59 0.10 3.40 16 5 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 6 O -0.57 -22.79 12.02 -136.95 -1.65 -24.43 16 7 C 0.12 5.03 5.90 86.38 0.51 5.54 16 8 N -0.74 -39.79 5.55 -343.46 -1.91 -41.69 16 9 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 10 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 11 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 12 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 13 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 14 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 16 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 17 C 0.59 17.29 7.23 86.61 0.63 17.91 16 18 O -0.56 -19.11 15.11 7.94 0.12 -18.99 16 19 C -0.05 -1.30 7.20 87.25 0.63 -0.68 16 20 N -0.43 -8.70 7.00 -190.32 -1.33 -10.04 16 21 C 0.01 0.10 11.24 83.95 0.94 1.04 16 22 C -0.26 -2.79 11.09 66.91 0.74 -2.04 16 23 S 0.26 4.45 23.04 -56.49 -1.30 3.14 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.11 2.12 5.28 -2.39 -0.01 2.10 16 26 H 0.09 1.39 7.83 -2.38 -0.02 1.38 16 27 H 0.09 2.34 7.47 -2.39 -0.02 2.32 16 28 H 0.12 2.39 7.86 -2.39 -0.02 2.37 16 29 H 0.38 14.22 8.34 -74.06 -0.62 13.60 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.37 21.96 7.67 -92.71 -0.71 21.25 16 33 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -76.38 314.99 0.18 -76.19 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.19 Total: 32.88 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.54 Total: 13.08 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -5.36 Total: -131.28 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.53 Total: -43.42 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.30 Total: 3.14 kcal Total: -76.38 0.18 -76.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677125035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.163 kcal (2) G-P(sol) polarization free energy of solvation -76.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds