Wall clock time and date at job start Wed Apr 15 2020 11:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.89489 * 2 1 4 4 N 1.40072 * 108.23974 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03731 * 179.97438 * 4 3 2 6 6 C 1.34982 * 107.92666 * 359.77778 * 4 3 2 7 7 Cl 1.73608 * 126.14069 * 180.22900 * 6 4 3 8 8 C 1.35460 * 107.71636 * 0.36314 * 6 4 3 9 9 C 1.50704 * 126.04977 * 179.90130 * 8 6 4 10 10 N 1.46903 * 109.47018 * 269.69039 * 9 8 6 11 11 C 1.47957 * 111.00079 * 170.00106 * 10 9 8 12 12 C 1.53937 * 86.18208 * 222.41605 * 11 10 9 13 13 O 1.42896 * 113.73148 * 269.25755 * 12 11 10 14 14 C 1.50694 * 113.73443 * 138.07827 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47958 * 111.00224 * 70.63784 * 10 9 8 23 23 H 1.09002 * 109.46369 * 269.95606 * 1 2 3 24 24 H 1.08997 * 109.47025 * 29.94606 * 1 2 3 25 25 H 1.08994 * 109.47396 * 149.95710 * 1 2 3 26 26 H 1.09001 * 109.47151 * 89.97372 * 5 4 3 27 27 H 1.09001 * 109.47142 * 209.98231 * 5 4 3 28 28 H 1.09001 * 109.46768 * 329.97455 * 5 4 3 29 29 H 1.08997 * 109.47128 * 149.69083 * 9 8 6 30 30 H 1.08999 * 109.47288 * 29.68341 * 9 8 6 31 31 H 1.08999 * 113.76060 * 108.09601 * 11 10 9 32 32 H 1.09001 * 113.85944 * 336.74419 * 11 10 9 33 33 H 0.96709 * 114.00030 * 178.09403 * 13 12 11 34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 35 35 H 1.09003 * 113.76031 * 23.26533 * 22 10 9 36 36 H 1.08999 * 113.76380 * 251.90073 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6351 -0.0006 5 6 4.7894 1.5025 -0.0013 6 6 3.6152 -0.7147 0.0040 7 17 5.0221 -1.7319 0.0110 8 6 2.3269 -1.1331 -0.0007 9 6 1.8596 -2.5659 -0.0002 10 7 1.7066 -3.0315 -1.3850 11 6 1.4822 -4.4932 -1.4312 12 6 2.4598 -4.5020 -2.6203 13 8 1.8230 -4.3425 -3.8895 14 6 3.4372 -5.6487 -2.5935 15 1 3.4051 -6.3670 -1.7876 16 6 4.3725 -5.7809 -3.5979 17 7 4.4113 -4.9065 -4.5796 18 14 5.5845 -7.2019 -3.5643 19 1 6.4775 -7.1190 -4.7479 20 1 6.3978 -7.1296 -2.3240 21 1 4.8413 -8.4872 -3.5947 22 6 3.0241 -3.1931 -2.0388 23 1 -0.3632 -0.0008 1.0277 24 1 -0.3633 0.8904 -0.5130 25 1 -0.3634 -0.8895 -0.5145 26 1 5.0825 1.7182 1.0262 27 1 5.6091 1.0003 -0.5152 28 1 4.5551 2.4346 -0.5156 29 1 0.9013 -2.6353 0.5145 30 1 2.5936 -3.1872 0.5129 31 1 0.4631 -4.7729 -1.6984 32 1 1.8526 -5.0241 -0.5543 33 1 2.4362 -4.3183 -4.6370 34 1 5.0696 -4.9994 -5.2859 35 1 3.8463 -3.3421 -1.3389 36 1 3.2370 -2.4341 -2.7914 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189540982.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:20 Heat of formation + Delta-G solvation = 61.154664 kcal Electronic energy + Delta-G solvation = -20948.393370 eV Core-core repulsion = 17689.683612 eV Total energy + Delta-G solvation = -3258.709758 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25155 -38.77751 -36.71636 -34.62119 -33.71596 -32.01318 -31.00221 -29.64544 -27.83891 -26.04299 -25.04364 -24.58626 -22.10606 -20.58830 -19.54474 -18.48052 -17.23012 -16.72132 -15.84920 -15.08941 -14.89848 -14.77150 -14.26314 -13.88116 -13.77255 -13.42382 -13.17521 -12.66125 -12.56648 -12.28584 -12.15444 -12.04476 -11.64696 -11.54514 -11.45186 -11.13763 -11.04666 -10.79023 -10.63164 -10.33323 -10.23507 -9.91013 -9.30502 -9.00372 -8.61952 -8.33237 -7.96280 -7.68158 -6.21092 -4.30501 1.60830 1.75875 2.71159 2.74664 3.22263 3.27755 3.30257 4.28512 4.41631 4.97097 5.00983 5.03731 5.09636 5.23566 5.29453 5.29864 5.61530 5.73103 5.95666 5.99708 6.06006 6.07943 6.09954 6.27254 6.42842 6.58788 6.69948 6.77588 6.79300 7.15856 7.30589 7.44170 7.67790 7.81782 8.05505 8.10698 8.70585 9.38891 9.72455 10.84500 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.020471 B = 0.005788 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.490324 B = 4836.171967 C = 5623.521301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.098 3.902 3 N -0.284 5.284 4 N -0.373 5.373 5 C 0.100 3.900 6 C 0.126 3.874 7 Cl 0.003 6.997 8 C -0.188 4.188 9 C 0.092 3.908 10 N -0.472 5.472 11 C 0.007 3.993 12 C 0.243 3.757 13 O -0.573 6.573 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.011 4.011 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.388 0.612 34 H 0.270 0.730 35 H 0.067 0.933 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 9.585 9.928 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 N -0.108 5.108 4 N -0.157 5.157 5 C -0.041 4.041 6 C -0.027 4.027 7 Cl 0.031 6.969 8 C -0.201 4.201 9 C -0.037 4.037 10 N -0.195 5.195 11 C -0.121 4.121 12 C 0.202 3.798 13 O -0.384 6.384 14 C -0.573 4.573 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.199 1.199 22 C -0.140 4.140 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.784 11.361 9.852 15.058 hybrid contribution 2.307 -1.994 0.104 3.051 sum 1.523 9.368 9.956 13.755 Atomic orbital electron populations 1.20219 0.86053 1.04124 1.02689 1.22101 0.97101 0.89455 0.98099 1.77390 0.85113 1.21865 1.26466 1.48353 1.06132 1.02710 1.58538 1.21878 0.83920 0.94943 1.03376 1.21505 0.90628 0.83745 1.06861 1.98422 1.37965 1.63710 1.96837 1.19549 0.89249 0.97212 1.14062 1.20920 0.99837 0.89158 0.93790 1.68634 1.24940 1.14810 1.11153 1.24140 1.01006 0.88195 0.98792 1.19754 0.87745 0.90540 0.81778 1.86032 1.39366 1.95822 1.17219 1.21627 1.15097 1.11446 1.09178 0.91798 1.25034 0.97033 0.96018 0.94939 1.69349 1.36670 1.35554 1.12269 0.86531 0.80638 0.82555 0.77570 1.21059 1.20166 1.19926 1.24763 0.90137 1.00983 0.98077 0.90694 0.90939 0.89208 0.90675 0.89409 0.88901 0.90485 0.93860 0.90669 0.91818 0.75740 0.91946 0.91501 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.12 36.01 0.36 -0.54 16 2 C 0.10 1.58 7.22 -82.41 -0.59 0.99 16 3 N -0.28 -4.66 12.57 33.67 0.42 -4.23 16 4 N -0.37 -5.68 4.01 -64.90 -0.26 -5.94 16 5 C 0.10 1.04 11.31 59.85 0.68 1.72 16 6 C 0.13 2.10 7.16 -17.16 -0.12 1.97 16 7 Cl 0.00 0.04 25.84 -51.86 -1.34 -1.30 16 8 C -0.19 -3.25 5.25 -105.01 -0.55 -3.80 16 9 C 0.09 1.63 4.81 -4.97 -0.02 1.60 16 10 N -0.47 -9.97 6.25 -239.69 -1.50 -11.47 16 11 C 0.01 0.16 7.36 -2.77 -0.02 0.14 16 12 C 0.24 6.22 1.44 -90.84 -0.13 6.09 16 13 O -0.57 -15.76 13.48 -35.23 -0.47 -16.23 16 14 C -0.54 -14.33 8.62 -34.44 -0.30 -14.63 16 15 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 16 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 17 N -0.90 -24.32 11.09 55.43 0.61 -23.70 16 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 19 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.01 -0.25 6.32 -2.77 -0.02 -0.27 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.09 1.16 7.92 -51.93 -0.41 0.75 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.84 7.81 -51.93 -0.41 0.43 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.19 7.92 -51.93 -0.41 0.78 16 30 H 0.04 0.77 7.45 -51.93 -0.39 0.38 16 31 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 33 H 0.39 10.86 6.46 45.56 0.29 11.16 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.07 1.54 5.40 -51.93 -0.28 1.26 16 36 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -30.21 314.79 -7.71 -37.92 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.09 Total: 9.65 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.81 Total: -4.93 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.72 Total: -45.34 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.47 Total: -16.23 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.34 Total: -1.30 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.21 -7.71 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189540982.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.079 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds