Wall clock time and date at job start Wed Apr 15 2020 11:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33740 * 126.12597 * 2 1 4 4 H 0.97005 * 124.98036 * 0.04105 * 3 2 1 5 5 N 1.39882 * 110.05299 * 180.02562 * 3 2 1 6 6 C 1.31919 * 109.18010 * 0.02562 * 5 3 2 7 7 N 1.34424 * 134.11404 * 179.97438 * 6 5 3 8 8 C 1.30484 * 121.57469 * 179.72084 * 7 6 5 9 9 C 1.40860 * 122.36970 * 0.56337 * 8 7 6 10 10 C 1.47399 * 119.92990 * 179.72977 * 9 8 7 11 11 O 1.21636 * 120.00577 * 164.29252 * 10 9 8 12 12 N 1.34776 * 119.99854 * 344.28681 * 10 9 8 13 13 C 1.36898 * 120.00158 * 174.82190 * 12 10 9 14 14 H 1.07993 * 120.00338 * 45.46569 * 13 12 10 15 15 C 1.39021 * 119.99254 * 225.20272 * 13 12 10 16 16 N 1.31382 * 120.00537 * 27.08249 * 15 13 12 17 17 Si 1.86803 * 119.99528 * 207.07526 * 15 13 12 18 18 H 1.48509 * 109.46873 * 90.00124 * 17 15 13 19 19 H 1.48495 * 109.47481 * 209.99696 * 17 15 13 20 20 H 1.48495 * 109.47437 * 330.00599 * 17 15 13 21 21 C 1.46502 * 120.00083 * 354.81043 * 12 10 9 22 22 C 1.47199 * 109.47474 * 319.97111 * 21 12 10 23 23 N 5.09772 * 131.20052 * 217.92489 * 2 1 3 24 24 C 1.38961 * 120.14464 * 359.44146 * 9 8 7 25 25 C 1.38550 * 126.13208 * 180.02562 * 2 1 3 26 26 H 1.09006 * 109.46728 * 269.95945 * 1 2 3 27 27 H 1.09000 * 109.46965 * 29.95429 * 1 2 3 28 28 H 1.08995 * 109.47277 * 149.95506 * 1 2 3 29 29 H 1.08007 * 118.81585 * 180.26268 * 8 7 6 30 30 H 0.97003 * 120.00284 * 179.97438 * 16 15 13 31 31 H 1.09008 * 109.46739 * 79.96725 * 21 12 10 32 32 H 1.08994 * 109.47788 * 199.96350 * 21 12 10 33 33 H 1.08002 * 121.05043 * 180.23485 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0802 0.0000 4 1 1.9813 1.9980 0.0006 5 7 3.6396 0.6930 -0.0006 6 6 3.7111 -0.6243 -0.0015 7 7 4.7255 -1.5063 -0.0028 8 6 4.5117 -2.7935 0.0019 9 6 3.2145 -3.3425 -0.0031 10 6 3.0351 -4.8055 -0.0034 11 8 1.9535 -5.2858 0.2776 12 7 4.0696 -5.6112 -0.3152 13 6 3.9342 -6.9697 -0.2130 14 1 3.0510 -7.4550 -0.6011 15 6 4.9363 -7.7249 0.3854 16 7 5.7158 -7.1811 1.2925 17 14 5.1744 -9.5129 -0.1002 18 1 6.1319 -9.5950 -1.2324 19 1 5.7103 -10.2731 1.0573 20 1 3.8704 -10.0919 -0.5119 21 6 5.3389 -5.0333 -0.7637 22 6 5.0712 -3.8998 -1.6638 23 7 4.8648 -3.0256 -2.3574 24 6 2.1035 -2.5079 -0.0017 25 6 2.3239 -1.1190 -0.0005 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3633 -0.8895 -0.5145 29 1 5.3599 -3.4621 0.0050 30 1 6.4148 -7.7082 1.7104 31 1 5.9050 -4.6852 0.1004 32 1 5.9155 -5.7906 -1.2947 33 1 1.1023 -2.9130 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355690081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:25 Heat of formation + Delta-G solvation = 170.365625 kcal Electronic energy + Delta-G solvation = -21950.842661 eV Core-core repulsion = 18595.761152 eV Total energy + Delta-G solvation = -3355.081510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51963 -39.97720 -37.35735 -36.36395 -34.65165 -33.23887 -32.16440 -31.30092 -30.50410 -28.14425 -27.32380 -25.22379 -24.41527 -22.64617 -20.14741 -19.86100 -18.47240 -17.84090 -17.09920 -16.87551 -15.90740 -15.72001 -15.40340 -15.02696 -14.14353 -14.08880 -13.98884 -13.80149 -13.28625 -13.06726 -12.98504 -12.56869 -12.45745 -12.28015 -12.08778 -11.75829 -11.33989 -11.17230 -11.14501 -10.81071 -10.72023 -10.40076 -10.24645 -9.18775 -9.05319 -8.65721 -8.54367 -7.83805 -7.65850 -6.56395 -4.21891 0.52808 1.58537 2.39801 2.51276 2.99069 3.13577 3.21415 3.23051 3.26999 3.76030 3.98169 4.11326 4.20768 4.25184 4.48405 4.60220 4.73414 4.92475 4.98161 5.12831 5.14572 5.33470 5.38006 5.52599 5.66049 5.81474 5.93558 6.16618 6.34774 6.43329 6.71818 6.97762 7.44172 7.55543 7.87114 8.09177 8.25040 8.29014 8.94056 9.07576 9.72173 10.49727 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.004920 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.352400 B = 5689.983596 C = 6161.806789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.136 3.864 3 N -0.419 5.419 4 H 0.443 0.557 5 N -0.303 5.303 6 C 0.289 3.711 7 N -0.483 5.483 8 C 0.182 3.818 9 C -0.223 4.223 10 C 0.524 3.476 11 O -0.558 6.558 12 N -0.434 5.434 13 C -0.329 4.329 14 H 0.097 0.903 15 C 0.053 3.947 16 N -0.849 5.849 17 Si 0.915 3.085 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.267 1.267 21 C 0.194 3.806 22 C 0.194 3.806 23 N -0.423 5.423 24 C 0.064 3.936 25 C -0.266 4.266 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.200 0.800 30 H 0.274 0.726 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 9.696 -1.473 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.006 4.006 3 N -0.119 5.119 4 H 0.287 0.713 5 N -0.134 5.134 6 C 0.027 3.973 7 N -0.197 5.197 8 C -0.001 4.001 9 C -0.231 4.231 10 C 0.313 3.687 11 O -0.439 6.439 12 N -0.155 5.155 13 C -0.456 4.456 14 H 0.114 0.886 15 C -0.156 4.156 16 N -0.482 5.482 17 Si 0.740 3.260 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.191 1.191 21 C 0.068 3.932 22 C -0.120 4.120 23 N -0.104 5.104 24 C 0.035 3.965 25 C -0.278 4.278 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.216 0.784 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.286 12.291 -2.233 13.207 hybrid contribution -0.985 -1.606 0.169 1.891 sum -5.271 10.685 -2.064 12.092 Atomic orbital electron populations 1.20616 0.85963 1.04747 1.04270 1.21294 0.94389 0.87319 0.97556 1.46290 1.04680 1.08529 1.52442 0.71268 1.77675 0.91611 1.10585 1.33525 1.21449 0.88887 0.91302 0.95674 1.67467 1.31143 1.01368 1.19737 1.24738 0.97751 0.91517 0.86104 1.20988 0.94313 0.96344 1.11484 1.17915 0.86180 0.84261 0.80328 1.90629 1.25438 1.76096 1.51763 1.43055 1.08709 1.06321 1.57426 1.19254 1.07758 0.78976 1.39608 0.88586 1.25525 0.97063 1.00237 0.92822 1.70053 1.19458 1.39200 1.19523 0.86122 0.79171 0.82276 0.78385 1.19923 1.20922 1.19091 1.19647 0.90895 0.89450 0.93182 1.29463 0.94913 0.94478 0.93192 1.81224 1.06295 1.10981 1.11920 1.20985 0.99229 0.89069 0.87258 1.20058 0.94846 0.94293 1.18593 0.89069 0.90370 0.88725 0.78440 0.91620 0.86731 0.86018 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.45 36.00 0.38 -0.34 16 2 C 0.14 1.71 7.29 -81.65 -0.59 1.11 16 3 N -0.42 -5.15 7.16 33.87 0.24 -4.91 16 4 H 0.44 3.32 8.96 -182.76 -1.64 1.68 16 5 N -0.30 -5.38 12.68 31.98 0.41 -4.98 16 6 C 0.29 5.72 8.60 -156.38 -1.35 4.38 16 7 N -0.48 -10.06 10.17 -11.64 -0.12 -10.18 16 8 C 0.18 3.64 6.37 -18.07 -0.12 3.52 16 9 C -0.22 -4.64 4.91 -104.91 -0.52 -5.15 16 10 C 0.52 12.34 7.23 -12.53 -0.09 12.25 16 11 O -0.56 -14.71 16.39 5.25 0.09 -14.63 16 12 N -0.43 -9.90 2.75 -125.29 -0.35 -10.24 16 13 C -0.33 -8.09 8.61 -15.00 -0.13 -8.22 16 14 H 0.10 2.49 7.92 -52.49 -0.42 2.07 16 15 C 0.05 1.23 4.87 -17.45 -0.09 1.14 16 16 N -0.85 -20.24 13.11 55.50 0.73 -19.51 16 17 Si 0.91 18.21 29.63 -169.99 -5.04 13.18 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C 0.19 3.61 4.76 -6.83 -0.03 3.58 16 22 C 0.19 3.65 10.08 -21.73 -0.22 3.43 16 23 N -0.42 -8.62 16.95 40.89 0.69 -7.92 16 24 C 0.06 1.18 9.75 -38.41 -0.37 0.80 16 25 C -0.27 -4.59 6.26 -105.21 -0.66 -5.25 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.20 3.67 2.71 -68.90 -0.19 3.48 16 30 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 31 H 0.12 2.00 6.37 -51.92 -0.33 1.67 16 32 H 0.12 2.07 7.79 -51.93 -0.40 1.66 16 33 H 0.14 2.40 7.75 -52.49 -0.41 1.99 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -33.49 293.57 -6.49 -39.98 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.79 Total: 3.53 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -3.78 Total: 11.25 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 1.61 Total: -57.74 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.63 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.04 Total: 13.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.49 -6.49 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355690081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.343 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds