Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33740 * 126.12597 * 2 1 4 4 H 0.97005 * 124.98036 * 0.04105 * 3 2 1 5 5 N 1.39882 * 110.05299 * 180.02562 * 3 2 1 6 6 C 1.31919 * 109.18010 * 0.02562 * 5 3 2 7 7 N 1.34424 * 134.11404 * 179.97438 * 6 5 3 8 8 C 1.30484 * 121.57469 * 179.72084 * 7 6 5 9 9 C 1.40860 * 122.36970 * 0.56337 * 8 7 6 10 10 C 1.47399 * 119.92990 * 179.72977 * 9 8 7 11 11 O 1.21636 * 120.00577 * 164.29252 * 10 9 8 12 12 N 1.34776 * 119.99854 * 344.28681 * 10 9 8 13 13 C 1.36898 * 120.00158 * 174.82190 * 12 10 9 14 14 H 1.07993 * 120.00338 * 45.46569 * 13 12 10 15 15 C 1.39021 * 119.99254 * 225.20272 * 13 12 10 16 16 N 1.31382 * 120.00537 * 27.08249 * 15 13 12 17 17 Si 1.86803 * 119.99528 * 207.07526 * 15 13 12 18 18 H 1.48509 * 109.46873 * 90.00124 * 17 15 13 19 19 H 1.48495 * 109.47481 * 209.99696 * 17 15 13 20 20 H 1.48495 * 109.47437 * 330.00599 * 17 15 13 21 21 C 1.46502 * 120.00083 * 354.81043 * 12 10 9 22 22 C 1.47199 * 109.47474 * 319.97111 * 21 12 10 23 23 N 5.09772 * 131.20052 * 217.92489 * 2 1 3 24 24 C 1.38961 * 120.14464 * 359.44146 * 9 8 7 25 25 C 1.38550 * 126.13208 * 180.02562 * 2 1 3 26 26 H 1.09006 * 109.46728 * 269.95945 * 1 2 3 27 27 H 1.09000 * 109.46965 * 29.95429 * 1 2 3 28 28 H 1.08995 * 109.47277 * 149.95506 * 1 2 3 29 29 H 1.08007 * 118.81585 * 180.26268 * 8 7 6 30 30 H 0.97003 * 120.00284 * 179.97438 * 16 15 13 31 31 H 1.09008 * 109.46739 * 79.96725 * 21 12 10 32 32 H 1.08994 * 109.47788 * 199.96350 * 21 12 10 33 33 H 1.08002 * 121.05043 * 180.23485 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0802 0.0000 4 1 1.9813 1.9980 0.0006 5 7 3.6396 0.6930 -0.0006 6 6 3.7111 -0.6243 -0.0015 7 7 4.7255 -1.5063 -0.0028 8 6 4.5117 -2.7935 0.0019 9 6 3.2145 -3.3425 -0.0031 10 6 3.0351 -4.8055 -0.0034 11 8 1.9535 -5.2858 0.2776 12 7 4.0696 -5.6112 -0.3152 13 6 3.9342 -6.9697 -0.2130 14 1 3.0510 -7.4550 -0.6011 15 6 4.9363 -7.7249 0.3854 16 7 5.7158 -7.1811 1.2925 17 14 5.1744 -9.5129 -0.1002 18 1 6.1319 -9.5950 -1.2324 19 1 5.7103 -10.2731 1.0573 20 1 3.8704 -10.0919 -0.5119 21 6 5.3389 -5.0333 -0.7637 22 6 5.0712 -3.8998 -1.6638 23 7 4.8648 -3.0256 -2.3574 24 6 2.1035 -2.5079 -0.0017 25 6 2.3239 -1.1190 -0.0005 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8904 -0.5131 28 1 -0.3633 -0.8895 -0.5145 29 1 5.3599 -3.4621 0.0050 30 1 6.4148 -7.7082 1.7104 31 1 5.9050 -4.6852 0.1004 32 1 5.9155 -5.7906 -1.2947 33 1 1.1023 -2.9130 -0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355690081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = 146.436772 kcal Electronic energy + Delta-G solvation = -21951.880294 eV Core-core repulsion = 18595.761152 eV Total energy + Delta-G solvation = -3356.119142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.097 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.83818 -41.49601 -38.99060 -37.90174 -36.36888 -34.49748 -33.91132 -32.58660 -31.82346 -29.71564 -28.49437 -26.82952 -25.83335 -24.13887 -21.65773 -21.26392 -19.94130 -19.40687 -18.52929 -18.31166 -17.32705 -17.24424 -16.79720 -16.63053 -15.73625 -15.60093 -15.45576 -15.24611 -14.52209 -14.40880 -14.19459 -13.94063 -13.79818 -13.58761 -13.42142 -13.22356 -12.90450 -12.75763 -12.66351 -12.39991 -12.14928 -11.98727 -11.63283 -10.91844 -10.73220 -10.16216 -10.01750 -9.56453 -9.09406 -8.35501 -6.09480 -0.74438 0.09938 1.11019 1.42578 1.46721 1.56196 1.60711 1.70143 1.72407 2.11582 2.38961 2.65864 2.72964 2.84435 3.02131 3.21429 3.25605 3.62914 3.65982 3.85061 3.88112 4.12079 4.33981 4.43862 4.65161 4.67340 4.71433 4.95425 4.99311 5.08204 5.32629 5.59219 6.05074 6.26000 6.27126 6.35076 6.46306 6.86447 7.12897 7.26400 7.93116 8.70803 Molecular weight = 285.10amu Principal moments of inertia in cm(-1) A = 0.031023 B = 0.004920 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.352400 B = 5689.983596 C = 6161.806789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.183 3.817 3 N -0.393 5.393 4 H 0.466 0.534 5 N -0.336 5.336 6 C 0.262 3.738 7 N -0.508 5.508 8 C 0.180 3.820 9 C -0.258 4.258 10 C 0.516 3.484 11 O -0.602 6.602 12 N -0.441 5.441 13 C -0.359 4.359 14 H 0.072 0.928 15 C 0.029 3.971 16 N -0.869 5.869 17 Si 0.978 3.022 18 H -0.257 1.257 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.201 3.799 22 C 0.215 3.785 23 N -0.446 5.446 24 C 0.081 3.919 25 C -0.299 4.299 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.205 0.795 30 H 0.281 0.719 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 11.032 -1.637 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.038 3.962 3 N -0.096 5.096 4 H 0.316 0.684 5 N -0.168 5.168 6 C 0.000 4.000 7 N -0.223 5.223 8 C -0.001 4.001 9 C -0.266 4.266 10 C 0.307 3.693 11 O -0.487 6.487 12 N -0.161 5.161 13 C -0.486 4.486 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.502 5.502 17 Si 0.801 3.199 18 H -0.181 1.181 19 H -0.207 1.207 20 H -0.201 1.201 21 C 0.076 3.924 22 C -0.100 4.100 23 N -0.128 5.128 24 C 0.053 3.947 25 C -0.311 4.311 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.220 0.780 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.296 13.679 -2.410 14.865 hybrid contribution -0.839 -1.789 0.276 1.995 sum -6.136 11.890 -2.134 13.548 Atomic orbital electron populations 1.20967 0.81368 1.06932 1.06428 1.22060 0.96480 0.85450 0.92200 1.46308 1.03160 1.09942 1.50222 0.68391 1.77590 0.94515 1.09760 1.34970 1.21712 0.89884 0.92026 0.96332 1.67378 1.32374 1.01677 1.20884 1.24684 0.97604 0.91543 0.86318 1.20727 0.95548 0.94752 1.15617 1.18369 0.85827 0.85570 0.79537 1.90568 1.26999 1.77185 1.53945 1.43183 1.09781 1.06011 1.57142 1.19189 1.08061 0.80013 1.41300 0.90992 1.26147 0.96141 1.03551 0.92072 1.70080 1.19729 1.40732 1.19675 0.85185 0.78763 0.77516 0.78388 1.18132 1.20730 1.20062 1.19713 0.89280 0.89704 0.93736 1.29280 0.94145 0.93997 0.92529 1.81212 1.06875 1.11620 1.13047 1.21189 0.99188 0.89726 0.84609 1.20292 0.94924 0.94836 1.21017 0.86536 0.86398 0.88356 0.78018 0.90923 0.85478 0.84281 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.45 71.24 0.74 -0.19 16 2 C 0.18 3.94 7.29 42.34 0.31 4.25 16 3 N -0.39 -8.40 7.16 -46.76 -0.33 -8.73 16 4 H 0.47 5.02 8.96 -213.46 -1.91 3.10 16 5 N -0.34 -11.55 12.68 -52.75 -0.67 -12.21 16 6 C 0.26 10.32 8.60 136.87 1.18 11.50 16 7 N -0.51 -21.57 10.17 -190.74 -1.94 -23.51 16 8 C 0.18 7.41 6.37 84.93 0.54 7.95 16 9 C -0.26 -11.01 4.91 -20.05 -0.10 -11.10 16 10 C 0.52 25.26 7.23 86.66 0.63 25.89 16 11 O -0.60 -33.13 16.39 -4.15 -0.07 -33.20 16 12 N -0.44 -20.74 2.75 -668.55 -1.84 -22.59 16 13 C -0.36 -18.15 8.61 84.09 0.72 -17.43 16 14 H 0.07 3.92 7.92 -2.91 -0.02 3.90 16 15 C 0.03 1.34 4.87 84.95 0.41 1.75 16 16 N -0.87 -41.30 13.11 21.68 0.28 -41.02 16 17 Si 0.98 37.14 29.63 68.60 2.03 39.17 16 18 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 19 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 21 C 0.20 7.58 4.76 84.57 0.40 7.98 16 22 C 0.21 8.22 10.08 88.85 0.90 9.12 16 23 N -0.45 -18.44 16.95 16.12 0.27 -18.17 16 24 C 0.08 3.02 9.75 23.03 0.22 3.24 16 25 C -0.30 -9.94 6.26 -20.25 -0.13 -10.07 16 26 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.20 7.73 2.71 -18.32 -0.05 7.68 16 30 H 0.28 12.38 8.31 -92.71 -0.77 11.61 16 31 H 0.13 4.52 6.37 -2.38 -0.02 4.50 16 32 H 0.14 4.71 7.79 -2.39 -0.02 4.69 16 33 H 0.16 5.16 7.75 -2.91 -0.02 5.14 16 Total: -1.00 -75.88 293.57 2.82 -73.06 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.75 Total: 14.31 kcal Atomic # 6 Polarization: 27.05 SS G_CDS: 5.83 Total: 32.88 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -4.23 Total: -126.23 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.07 Total: -33.20 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -75.88 2.82 -73.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355690081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.501 kcal (2) G-P(sol) polarization free energy of solvation -75.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds