Wall clock time and date at job start Wed Apr 15 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99690 * 2 1 4 4 O 1.20819 * 120.00419 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99304 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46675 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46853 * 179.97438 * 6 5 3 8 8 C 1.37098 * 119.99969 * 264.79531 * 7 6 5 9 9 H 1.08005 * 119.99660 * 146.20780 * 8 7 6 10 10 C 1.38952 * 120.00093 * 326.20746 * 8 7 6 11 11 N 1.31413 * 119.99785 * 165.60213 * 10 8 7 12 12 Si 1.86797 * 120.00047 * 345.60587 * 10 8 7 13 13 H 1.48503 * 109.47004 * 95.67012 * 12 10 8 14 14 H 1.48500 * 109.47432 * 215.67454 * 12 10 8 15 15 H 1.48503 * 109.47263 * 335.67364 * 12 10 8 16 16 C 1.34777 * 119.99754 * 84.79852 * 7 6 5 17 17 O 1.21289 * 120.00270 * 5.12695 * 16 7 6 18 18 C 1.50705 * 119.99588 * 185.12677 * 16 7 6 19 19 C 1.50692 * 115.55378 * 293.87711 * 18 16 7 20 20 O 1.20821 * 120.00298 * 118.85858 * 19 18 16 21 21 O 1.34230 * 120.00009 * 298.85916 * 19 18 16 22 22 C 1.53007 * 117.49341 * 148.20498 * 18 16 7 23 23 C 1.53001 * 117.49801 * 79.54908 * 18 16 7 24 24 H 1.09005 * 109.47145 * 300.00206 * 1 2 3 25 25 H 1.08997 * 109.47067 * 60.00019 * 1 2 3 26 26 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47193 * 59.99850 * 5 3 2 28 28 H 1.08996 * 109.47007 * 299.99666 * 5 3 2 29 29 H 1.08996 * 109.47038 * 299.99534 * 6 5 3 30 30 H 1.09001 * 109.47463 * 59.99912 * 6 5 3 31 31 H 0.97002 * 119.99447 * 180.02562 * 11 10 8 32 32 H 0.96702 * 117.00347 * 180.02562 * 21 19 18 33 33 H 1.08990 * 117.50100 * 0.02562 * 22 18 16 34 34 H 1.09006 * 117.49235 * 145.02228 * 22 18 16 35 35 H 1.08993 * 117.50116 * 214.97528 * 23 18 16 36 36 H 1.09002 * 117.49751 * 359.97183 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1421 2.9614 1.1827 9 1 7.1107 2.5004 1.3083 10 6 5.5840 3.6992 2.2196 11 7 6.0818 3.6087 3.4324 12 14 4.1261 4.8194 1.8895 13 1 2.8671 4.1020 2.2145 14 1 4.2351 6.0357 2.7344 15 1 4.1170 5.2110 0.4570 16 6 6.1416 2.7488 -1.1622 17 8 5.5397 2.7163 -2.2147 18 6 7.6482 2.7111 -1.1542 19 6 8.3270 3.9614 -0.6573 20 8 9.0371 3.9159 0.3191 21 8 8.1428 5.1256 -1.2995 22 6 8.3411 1.9270 -2.2705 23 6 8.3197 1.3718 -0.8441 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9557 0.7809 -0.8907 28 1 3.9564 0.7805 0.8891 29 1 3.6101 3.2366 -0.8893 30 1 3.6108 3.2356 0.8906 31 1 5.6920 4.1235 4.1562 32 1 8.5993 5.9003 -0.9438 33 1 7.7074 1.4388 -3.0107 34 1 9.2882 2.3153 -2.6451 35 1 9.2527 1.3950 -0.2811 36 1 7.6719 0.5180 -0.6454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593835668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:06 Heat of formation + Delta-G solvation = -162.453874 kcal Electronic energy + Delta-G solvation = -23610.024653 eV Core-core repulsion = 19868.616585 eV Total energy + Delta-G solvation = -3741.408068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41669 -40.12898 -38.72503 -36.57866 -36.08310 -35.49018 -34.87593 -32.34813 -31.05797 -27.79101 -25.90809 -24.96384 -24.11514 -22.15305 -21.32696 -20.51013 -19.00695 -17.97194 -17.57961 -17.01233 -16.59618 -16.50972 -16.22582 -15.55127 -15.13365 -14.93159 -14.23274 -14.04980 -13.88219 -13.60269 -13.21659 -12.76208 -12.73895 -12.41896 -12.30623 -11.98002 -11.80400 -11.36461 -11.28040 -11.01835 -10.85455 -10.70767 -10.63652 -10.35344 -10.29408 -10.08133 -9.90027 -9.79616 -9.33472 -8.81263 -8.07321 -6.52667 -4.18522 2.43510 2.70476 2.81558 3.02644 3.18776 3.25090 3.31557 3.51862 3.88620 4.05040 4.29163 4.86558 5.01559 5.11359 5.12654 5.17204 5.18998 5.36973 5.41027 5.44914 5.59132 5.76442 5.85860 5.90208 6.08741 6.13069 6.18839 6.36262 6.39480 6.54899 7.00996 7.13044 7.91149 7.94687 8.16853 8.47360 8.77783 9.15875 9.41577 10.56657 Molecular weight = 285.11amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.006862 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.432146 B = 4079.306410 C = 5004.578055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.468 3.532 4 O -0.510 6.510 5 C -0.125 4.125 6 C 0.116 3.884 7 N -0.451 5.451 8 C -0.355 4.355 9 H 0.122 0.878 10 C 0.069 3.931 11 N -0.852 5.852 12 Si 0.875 3.125 13 H -0.269 1.269 14 H -0.289 1.289 15 H -0.261 1.261 16 C 0.518 3.482 17 O -0.578 6.578 18 C -0.129 4.129 19 C 0.534 3.466 20 O -0.494 6.494 21 O -0.512 6.512 22 C -0.139 4.139 23 C -0.126 4.126 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.277 0.723 32 H 0.405 0.595 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -5.213 -6.446 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.397 6.397 5 C -0.163 4.163 6 C -0.007 4.007 7 N -0.171 5.171 8 C -0.482 4.482 9 H 0.139 0.861 10 C -0.140 4.140 11 N -0.486 5.486 12 Si 0.704 3.296 13 H -0.196 1.196 14 H -0.216 1.216 15 H -0.186 1.186 16 C 0.306 3.694 17 O -0.462 6.462 18 C -0.134 4.134 19 C 0.374 3.626 20 O -0.380 6.380 21 O -0.323 6.323 22 C -0.176 4.176 23 C -0.163 4.163 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.262 0.738 33 H 0.131 0.869 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.433 -5.225 -6.603 8.765 hybrid contribution -0.775 1.298 0.581 1.620 sum -3.207 -3.927 -6.022 7.872 Atomic orbital electron populations 1.23218 0.76955 1.03311 1.02452 1.86530 1.23033 1.33858 1.84404 1.23925 0.92216 0.81101 0.71706 1.90653 1.67343 1.36338 1.45373 1.21804 0.86467 1.01448 1.06605 1.21468 0.82852 0.93461 1.02960 1.43710 1.03674 1.63184 1.06497 1.19398 1.05819 1.34110 0.88844 0.86074 1.25297 0.97713 0.96049 0.94900 1.69678 1.40843 1.38493 0.99603 0.86990 0.82253 0.80819 0.79530 1.19583 1.21633 1.18561 1.18689 0.86087 0.81121 0.83480 1.90582 1.69125 1.55395 1.31090 1.20438 0.94118 0.90754 1.08045 1.21521 0.77669 0.83430 0.79940 1.90702 1.36987 1.85829 1.24515 1.84538 1.70313 1.19295 1.58175 1.23113 1.01220 1.00954 0.92333 1.23077 1.02314 0.93466 0.97470 0.92038 0.92044 0.88341 0.87233 0.86543 0.89853 0.90827 0.91293 0.73765 0.86947 0.88102 0.87222 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.51 10.57 -39.25 -0.41 -5.92 16 3 C 0.47 8.43 7.96 36.01 0.29 8.71 16 4 O -0.51 -10.49 15.73 -18.74 -0.29 -10.79 16 5 C -0.12 -2.29 6.10 -27.88 -0.17 -2.46 16 6 C 0.12 2.57 3.02 -4.04 -0.01 2.56 16 7 N -0.45 -10.59 2.31 -114.81 -0.27 -10.85 16 8 C -0.36 -9.07 8.49 -14.93 -0.13 -9.19 16 9 H 0.12 3.28 6.37 -52.48 -0.33 2.94 16 10 C 0.07 1.82 5.42 -17.47 -0.09 1.73 16 11 N -0.85 -23.56 13.96 55.50 0.77 -22.79 16 12 Si 0.88 21.26 24.54 -169.99 -4.17 17.09 16 13 H -0.27 -6.44 6.84 56.52 0.39 -6.06 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.26 -6.46 6.75 56.52 0.38 -6.08 16 16 C 0.52 11.69 6.88 -10.98 -0.08 11.61 16 17 O -0.58 -13.79 16.35 5.55 0.09 -13.70 16 18 C -0.13 -2.53 1.35 -156.81 -0.21 -2.75 16 19 C 0.53 10.84 6.44 36.00 0.23 11.07 16 20 O -0.49 -11.05 16.87 -18.75 -0.32 -11.37 16 21 O -0.51 -9.10 13.42 -39.26 -0.53 -9.62 16 22 C -0.14 -2.10 9.76 -26.69 -0.26 -2.36 16 23 C -0.13 -2.04 9.24 -26.69 -0.25 -2.28 16 24 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 28 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 29 H 0.08 1.91 7.47 -51.93 -0.39 1.53 16 30 H 0.07 1.75 2.38 -51.93 -0.12 1.62 16 31 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.40 5.09 9.10 45.56 0.41 5.50 16 33 H 0.11 1.65 8.01 -51.93 -0.42 1.23 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.11 1.71 7.92 -51.93 -0.41 1.30 16 36 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -33.36 316.20 -3.36 -36.72 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.39 Total: 8.36 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 0.39 Total: 18.10 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.51 Total: -33.65 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -1.46 Total: -51.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.17 Total: 17.09 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.36 -3.36 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593835668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.734 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds