Wall clock time and date at job start Wed Apr 15 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99690 * 2 1 4 4 O 1.20819 * 120.00419 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99304 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.46675 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46853 * 179.97438 * 6 5 3 8 8 C 1.37098 * 119.99969 * 264.79531 * 7 6 5 9 9 H 1.08005 * 119.99660 * 146.20780 * 8 7 6 10 10 C 1.38952 * 120.00093 * 326.20746 * 8 7 6 11 11 N 1.31413 * 119.99785 * 165.60213 * 10 8 7 12 12 Si 1.86797 * 120.00047 * 345.60587 * 10 8 7 13 13 H 1.48503 * 109.47004 * 95.67012 * 12 10 8 14 14 H 1.48500 * 109.47432 * 215.67454 * 12 10 8 15 15 H 1.48503 * 109.47263 * 335.67364 * 12 10 8 16 16 C 1.34777 * 119.99754 * 84.79852 * 7 6 5 17 17 O 1.21289 * 120.00270 * 5.12695 * 16 7 6 18 18 C 1.50705 * 119.99588 * 185.12677 * 16 7 6 19 19 C 1.50692 * 115.55378 * 293.87711 * 18 16 7 20 20 O 1.20821 * 120.00298 * 118.85858 * 19 18 16 21 21 O 1.34230 * 120.00009 * 298.85916 * 19 18 16 22 22 C 1.53007 * 117.49341 * 148.20498 * 18 16 7 23 23 C 1.53001 * 117.49801 * 79.54908 * 18 16 7 24 24 H 1.09005 * 109.47145 * 300.00206 * 1 2 3 25 25 H 1.08997 * 109.47067 * 60.00019 * 1 2 3 26 26 H 1.09004 * 109.47320 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47193 * 59.99850 * 5 3 2 28 28 H 1.08996 * 109.47007 * 299.99666 * 5 3 2 29 29 H 1.08996 * 109.47038 * 299.99534 * 6 5 3 30 30 H 1.09001 * 109.47463 * 59.99912 * 6 5 3 31 31 H 0.97002 * 119.99447 * 180.02562 * 11 10 8 32 32 H 0.96702 * 117.00347 * 180.02562 * 21 19 18 33 33 H 1.08990 * 117.50100 * 0.02562 * 22 18 16 34 34 H 1.09006 * 117.49235 * 145.02228 * 22 18 16 35 35 H 1.08993 * 117.50116 * 214.97528 * 23 18 16 36 36 H 1.09002 * 117.49751 * 359.97183 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0001 2.7420 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1421 2.9614 1.1827 9 1 7.1107 2.5004 1.3083 10 6 5.5840 3.6992 2.2196 11 7 6.0818 3.6087 3.4324 12 14 4.1261 4.8194 1.8895 13 1 2.8671 4.1020 2.2145 14 1 4.2351 6.0357 2.7344 15 1 4.1170 5.2110 0.4570 16 6 6.1416 2.7488 -1.1622 17 8 5.5397 2.7163 -2.2147 18 6 7.6482 2.7111 -1.1542 19 6 8.3270 3.9614 -0.6573 20 8 9.0371 3.9159 0.3191 21 8 8.1428 5.1256 -1.2995 22 6 8.3411 1.9270 -2.2705 23 6 8.3197 1.3718 -0.8441 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9557 0.7809 -0.8907 28 1 3.9564 0.7805 0.8891 29 1 3.6101 3.2366 -0.8893 30 1 3.6108 3.2356 0.8906 31 1 5.6920 4.1235 4.1562 32 1 8.5993 5.9003 -0.9438 33 1 7.7074 1.4388 -3.0107 34 1 9.2882 2.3153 -2.6451 35 1 9.2527 1.3950 -0.2811 36 1 7.6719 0.5180 -0.6454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593835668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:05 Heat of formation + Delta-G solvation = -186.066227 kcal Electronic energy + Delta-G solvation = -23611.048561 eV Core-core repulsion = 19868.616585 eV Total energy + Delta-G solvation = -3742.431976 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.95576 -41.55471 -40.39886 -37.99200 -37.49891 -37.14290 -36.52869 -34.26970 -32.71633 -28.93344 -27.47190 -26.79076 -25.66046 -23.39327 -22.90297 -21.95089 -20.73606 -19.63888 -19.04954 -18.55615 -18.25111 -17.97523 -17.65678 -17.05978 -16.87315 -16.53657 -15.83686 -15.66227 -15.41156 -15.00077 -14.68806 -14.54319 -14.20724 -14.07596 -13.87322 -13.55340 -13.13513 -12.98955 -12.71809 -12.55638 -12.50343 -12.16837 -12.12057 -11.88330 -11.78380 -11.66190 -11.61207 -11.39235 -11.16328 -10.62176 -9.99024 -8.56149 -6.20811 1.02573 1.08531 1.14304 1.23404 1.29442 1.46499 1.66734 2.04830 2.11593 2.35007 2.78167 2.95096 3.61503 3.63850 3.76389 3.84962 3.93353 4.02152 4.26654 4.28941 4.29519 4.34453 4.53246 4.66204 4.67949 4.73383 4.79328 4.93023 5.17415 5.23082 5.25260 5.61862 5.98612 6.14994 6.58566 6.82295 7.04803 7.24027 7.54283 8.57181 Molecular weight = 285.11amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.006862 C = 0.005594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.432146 B = 4079.306410 C = 5004.578055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.474 3.526 4 O -0.541 6.541 5 C -0.117 4.117 6 C 0.112 3.888 7 N -0.463 5.463 8 C -0.336 4.336 9 H 0.106 0.894 10 C 0.035 3.965 11 N -0.888 5.888 12 Si 0.918 3.082 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.272 1.272 16 C 0.523 3.477 17 O -0.592 6.592 18 C -0.174 4.174 19 C 0.535 3.465 20 O -0.523 6.523 21 O -0.513 6.513 22 C -0.106 4.106 23 C -0.116 4.116 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.139 0.861 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.279 0.721 32 H 0.425 0.575 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -6.396 -7.688 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.431 6.431 5 C -0.155 4.155 6 C -0.010 4.010 7 N -0.183 5.183 8 C -0.463 4.463 9 H 0.123 0.877 10 C -0.170 4.170 11 N -0.525 5.525 12 Si 0.747 3.253 13 H -0.194 1.194 14 H -0.215 1.215 15 H -0.198 1.198 16 C 0.312 3.688 17 O -0.476 6.476 18 C -0.178 4.178 19 C 0.377 3.623 20 O -0.411 6.411 21 O -0.326 6.326 22 C -0.143 4.143 23 C -0.153 4.153 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.286 0.714 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.594 -6.413 -7.864 10.474 hybrid contribution -0.753 1.629 0.839 1.981 sum -3.347 -4.784 -7.025 9.134 Atomic orbital electron populations 1.23622 0.74517 1.06037 1.02561 1.86505 1.25301 1.31955 1.83608 1.23731 0.91987 0.81464 0.71036 1.90643 1.67916 1.37509 1.47029 1.21638 0.87277 0.98875 1.07751 1.21404 0.82272 0.95873 1.01495 1.43778 1.04109 1.64138 1.06273 1.19186 1.05112 1.32860 0.89140 0.87690 1.25682 0.99303 0.97080 0.94936 1.69725 1.42454 1.40063 1.00269 0.86309 0.80752 0.79766 0.78456 1.19425 1.21520 1.19759 1.19137 0.87429 0.79487 0.82776 1.90563 1.70071 1.55589 1.31379 1.20594 0.92315 0.92097 1.12799 1.21683 0.77145 0.84086 0.79420 1.90687 1.38479 1.86345 1.25626 1.84496 1.70400 1.19701 1.57998 1.23298 1.01497 0.98000 0.91510 1.23191 1.02019 0.91600 0.98511 0.92183 0.91788 0.84319 0.85693 0.85718 0.91048 0.92402 0.91049 0.71392 0.86081 0.85406 0.86693 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -10.14 10.57 -51.40 -0.54 -10.69 16 3 C 0.47 16.52 7.96 71.24 0.57 17.08 16 4 O -0.54 -21.97 15.73 21.99 0.35 -21.62 16 5 C -0.12 -4.17 6.10 29.85 0.18 -3.99 16 6 C 0.11 4.97 3.02 86.38 0.26 5.23 16 7 N -0.46 -21.51 2.31 -635.53 -1.47 -22.98 16 8 C -0.34 -17.15 8.49 84.04 0.71 -16.43 16 9 H 0.11 5.71 6.37 -2.91 -0.02 5.69 16 10 C 0.03 1.86 5.42 84.93 0.46 2.32 16 11 N -0.89 -49.67 13.96 21.66 0.30 -49.37 16 12 Si 0.92 44.38 24.54 68.60 1.68 46.06 16 13 H -0.27 -12.71 6.84 99.48 0.68 -12.03 16 14 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 15 H -0.27 -13.47 6.75 99.48 0.67 -12.80 16 16 C 0.52 23.01 6.88 87.66 0.60 23.61 16 17 O -0.59 -27.45 16.35 -3.06 -0.05 -27.50 16 18 C -0.17 -6.54 1.35 -53.67 -0.07 -6.61 16 19 C 0.53 21.16 6.44 71.23 0.46 21.62 16 20 O -0.52 -23.15 16.87 21.98 0.37 -22.78 16 21 O -0.51 -17.55 13.42 -51.42 -0.69 -18.24 16 22 C -0.11 -2.88 9.76 30.62 0.30 -2.58 16 23 C -0.12 -3.50 9.24 30.62 0.28 -3.22 16 24 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 25 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.14 1.71 8.14 -2.38 -0.02 1.70 16 27 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 28 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 29 H 0.07 3.29 7.47 -2.39 -0.02 3.27 16 30 H 0.06 2.75 2.38 -2.39 -0.01 2.74 16 31 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.42 10.16 9.10 -74.06 -0.67 9.48 16 33 H 0.12 3.12 8.01 -2.39 -0.02 3.11 16 34 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.11 3.36 7.92 -2.39 -0.02 3.34 16 36 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -71.37 316.20 5.30 -66.07 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.40 Total: 22.31 kcal Atomic # 6 Polarization: 33.79 SS G_CDS: 4.95 Total: 38.74 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.16 Total: -72.34 kcal Atomic # 8 Polarization: -100.27 SS G_CDS: -0.57 Total: -100.83 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.68 Total: 46.06 kcal Total: -71.37 5.30 -66.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593835668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.001 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds