Wall clock time and date at job start Wed Apr 15 2020 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99629 * 2 1 4 4 O 1.20826 * 120.00415 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00085 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47512 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.47396 * 179.97438 * 6 5 3 8 8 C 1.37104 * 120.00126 * 269.99766 * 7 6 5 9 9 H 1.08000 * 119.99837 * 144.69357 * 8 7 6 10 10 C 1.38945 * 119.99767 * 324.70158 * 8 7 6 11 11 N 1.31418 * 119.99845 * 152.22953 * 10 8 7 12 12 Si 1.86797 * 120.00169 * 332.22138 * 10 8 7 13 13 H 1.48500 * 109.47059 * 95.72734 * 12 10 8 14 14 H 1.48500 * 109.47004 * 215.72364 * 12 10 8 15 15 H 1.48496 * 109.47302 * 335.72508 * 12 10 8 16 16 C 1.34774 * 119.99921 * 90.00165 * 7 6 5 17 17 O 1.21292 * 120.00331 * 354.13820 * 16 7 6 18 18 C 1.50700 * 120.00110 * 174.42098 * 16 7 6 19 19 H 1.09001 * 115.54956 * 296.25211 * 18 16 7 20 20 C 1.52997 * 117.49943 * 150.54555 * 18 16 7 21 21 C 1.53000 * 117.50105 * 81.92069 * 18 16 7 22 22 H 1.08995 * 117.50281 * 214.98281 * 21 18 16 23 23 C 1.50701 * 117.49885 * 0.02562 * 21 18 16 24 24 O 1.20827 * 120.00444 * 81.66720 * 23 21 18 25 25 O 1.34237 * 119.99824 * 261.67229 * 23 21 18 26 26 H 1.08995 * 109.47614 * 300.00377 * 1 2 3 27 27 H 1.08995 * 109.47512 * 60.00758 * 1 2 3 28 28 H 1.09004 * 109.46733 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47509 * 59.98845 * 5 3 2 30 30 H 1.09004 * 109.47138 * 299.99605 * 5 3 2 31 31 H 1.09003 * 109.47135 * 59.99821 * 6 5 3 32 32 H 1.08997 * 109.47246 * 299.99527 * 6 5 3 33 33 H 0.96996 * 120.00338 * 179.97438 * 11 10 8 34 34 H 1.08993 * 117.50230 * 359.97438 * 20 18 16 35 35 H 1.09000 * 117.49849 * 145.02311 * 20 18 16 36 36 H 0.96702 * 116.99864 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4630 2.8189 -0.0011 8 6 6.1475 2.8553 1.1863 9 1 7.1055 2.3643 1.2725 10 6 5.6085 3.5238 2.2787 11 7 5.9174 3.1451 3.4986 12 14 4.4451 4.9609 2.0133 13 1 3.0415 4.4810 2.0832 14 1 4.6719 5.9825 3.0669 15 1 4.6969 5.5618 0.6789 16 6 6.1359 2.8538 -1.1682 17 8 5.5408 2.7148 -2.2159 18 6 7.6289 3.0592 -1.1713 19 1 7.9724 4.0172 -0.7810 20 6 8.4251 2.4376 -2.3204 21 6 8.5109 1.8353 -0.9165 22 1 9.4349 1.9881 -0.3589 23 6 7.8203 0.5165 -0.6822 24 8 7.4336 -0.1383 -1.6212 25 8 7.6347 0.0693 0.5698 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7810 -0.8907 30 1 3.9563 0.7808 0.8892 31 1 3.6105 3.2365 0.8889 32 1 3.6100 3.2361 -0.8911 33 1 5.5415 3.6119 4.2612 34 1 7.8692 1.8797 -3.0739 35 1 9.2927 2.9866 -2.6864 36 1 7.1865 -0.7817 0.6700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598854832.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:07 Heat of formation + Delta-G solvation = -193.018198 kcal Electronic energy + Delta-G solvation = -23718.970118 eV Core-core repulsion = 19976.236681 eV Total energy + Delta-G solvation = -3742.733436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.114 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.83315 -41.52161 -40.39377 -37.96741 -37.49131 -36.87005 -36.57025 -34.18101 -32.66027 -28.89257 -27.14369 -26.61494 -26.16548 -23.82082 -21.97037 -21.63193 -20.70402 -19.41634 -19.05358 -18.56341 -18.10536 -17.87166 -17.61827 -17.14114 -16.81360 -16.71571 -15.88989 -15.53493 -15.29767 -15.09743 -14.57907 -14.46898 -14.18224 -13.99268 -13.76678 -13.57302 -13.07377 -12.91106 -12.81734 -12.70230 -12.42656 -12.12984 -11.92247 -11.84233 -11.77389 -11.72130 -11.49983 -11.34577 -11.10178 -10.54049 -9.86235 -8.52499 -6.04043 0.99374 1.13968 1.20556 1.33116 1.40894 1.51209 1.75760 2.12853 2.19632 2.48939 2.85358 3.05313 3.64707 3.73978 3.80883 3.83985 4.01115 4.08916 4.24985 4.26538 4.34253 4.43393 4.50405 4.59500 4.63178 4.78091 4.89416 4.93473 5.20039 5.20310 5.34149 5.68454 6.10294 6.33115 6.55919 6.97071 7.09721 7.38105 7.72888 8.59722 Molecular weight = 285.11amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.007854 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.492009 B = 3564.064355 C = 4577.828581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.474 3.526 4 O -0.538 6.538 5 C -0.113 4.113 6 C 0.113 3.887 7 N -0.459 5.459 8 C -0.337 4.337 9 H 0.118 0.882 10 C 0.051 3.949 11 N -0.867 5.867 12 Si 0.889 3.111 13 H -0.279 1.279 14 H -0.279 1.279 15 H -0.269 1.269 16 C 0.484 3.516 17 O -0.613 6.613 18 C -0.138 4.138 19 H 0.156 0.844 20 C -0.109 4.109 21 C -0.148 4.148 22 H 0.174 0.826 23 C 0.508 3.492 24 O -0.551 6.551 25 O -0.495 6.495 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.279 0.721 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -4.713 -3.327 5.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.319 3.681 4 O -0.428 6.428 5 C -0.151 4.151 6 C -0.010 4.010 7 N -0.179 5.179 8 C -0.464 4.464 9 H 0.135 0.865 10 C -0.156 4.156 11 N -0.503 5.503 12 Si 0.716 3.284 13 H -0.206 1.206 14 H -0.206 1.206 15 H -0.193 1.193 16 C 0.275 3.725 17 O -0.499 6.499 18 C -0.158 4.158 19 H 0.174 0.826 20 C -0.146 4.146 21 C -0.167 4.167 22 H 0.192 0.808 23 C 0.353 3.647 24 O -0.443 6.443 25 O -0.306 6.306 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.157 0.843 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.176 0.824 36 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 0.170 -4.280 -3.869 5.772 hybrid contribution -1.432 0.326 0.464 1.540 sum -1.262 -3.954 -3.405 5.368 Atomic orbital electron populations 1.23625 0.74453 1.06052 1.02610 1.86511 1.25416 1.32110 1.83620 1.23735 0.91947 0.81459 0.71006 1.90630 1.67836 1.37366 1.47010 1.21563 0.87200 0.99862 1.06497 1.21345 0.83052 0.94938 1.01690 1.43824 1.03836 1.64133 1.06064 1.19231 1.07080 1.34607 0.85440 0.86477 1.25553 0.97461 0.97726 0.94811 1.69862 1.43721 1.38041 0.98658 0.86756 0.80065 0.82853 0.78702 1.20625 1.20557 1.19350 1.20276 0.89876 0.79632 0.82696 1.90561 1.70970 1.55644 1.32741 1.22124 0.89326 0.98860 1.05539 0.82616 1.23240 1.02087 0.99948 0.89296 1.21941 1.02309 0.88088 1.04347 0.80842 1.22662 0.74974 0.86948 0.80163 1.90671 1.49591 1.59016 1.44986 1.84611 1.73029 1.43137 1.29869 0.91940 0.91879 0.84342 0.87747 0.86138 0.91486 0.91814 0.91095 0.89519 0.82431 0.72031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -11.25 10.57 -51.40 -0.54 -11.79 16 3 C 0.47 17.86 7.96 71.23 0.57 18.42 16 4 O -0.54 -22.87 15.73 21.96 0.35 -22.52 16 5 C -0.11 -4.43 6.13 29.85 0.18 -4.25 16 6 C 0.11 5.14 3.54 86.38 0.31 5.45 16 7 N -0.46 -20.95 2.19 -635.55 -1.40 -22.35 16 8 C -0.34 -15.85 9.04 84.04 0.76 -15.09 16 9 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 10 C 0.05 2.53 5.21 84.92 0.44 2.97 16 11 N -0.87 -44.30 13.96 21.66 0.30 -44.00 16 12 Si 0.89 40.80 25.34 68.60 1.74 42.54 16 13 H -0.28 -13.18 6.62 99.48 0.66 -12.52 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 16 C 0.48 21.57 6.30 87.66 0.55 22.12 16 17 O -0.61 -30.60 16.29 -3.07 -0.05 -30.65 16 18 C -0.14 -4.75 4.87 -11.54 -0.06 -4.81 16 19 H 0.16 4.72 8.14 -2.39 -0.02 4.70 16 20 C -0.11 -3.06 9.56 30.59 0.29 -2.77 16 21 C -0.15 -4.43 5.57 -11.54 -0.06 -4.49 16 22 H 0.17 3.92 8.14 -2.39 -0.02 3.90 16 23 C 0.51 17.84 6.87 71.24 0.49 18.33 16 24 O -0.55 -22.33 17.10 21.96 0.38 -21.95 16 25 O -0.50 -15.91 12.42 -51.48 -0.64 -16.55 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.39 16 27 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 28 H 0.14 1.97 8.14 -2.39 -0.02 1.96 16 29 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 30 H 0.12 4.56 8.14 -2.39 -0.02 4.54 16 31 H 0.07 3.19 3.37 -2.39 -0.01 3.18 16 32 H 0.06 3.03 7.47 -2.39 -0.02 3.01 16 33 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.09 2.96 7.55 -2.39 -0.02 2.95 16 35 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.42 10.06 9.10 -74.06 -0.67 9.39 16 Total: -1.00 -69.30 316.59 5.21 -64.08 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.41 Total: 25.54 kcal Atomic # 6 Polarization: 32.98 SS G_CDS: 4.67 Total: 37.65 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -1.09 Total: -66.35 kcal Atomic # 8 Polarization: -102.95 SS G_CDS: -0.51 Total: -103.46 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.74 Total: 42.54 kcal Total: -69.30 5.21 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598854832.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.935 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds