Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00036 * 2 1 4 4 O 1.20830 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00117 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.70146 * 351.90391 * 5 3 2 7 7 C 1.53622 * 109.66588 * 112.49974 * 5 3 2 8 8 C 1.53045 * 109.24148 * 174.54914 * 7 5 3 9 9 H 1.09003 * 109.45545 * 58.52880 * 8 7 5 10 10 C 1.50699 * 109.44968 * 178.49486 * 8 7 5 11 11 O 1.20817 * 119.99905 * 0.05979 * 10 8 7 12 12 O 1.34227 * 119.99831 * 180.02562 * 10 8 7 13 13 C 1.53037 * 109.53889 * 298.51101 * 8 7 5 14 14 C 1.53195 * 109.31298 * 61.36341 * 13 8 7 15 15 N 1.46927 * 109.58423 * 231.55028 * 5 3 2 16 16 C 1.34776 * 120.63104 * 6.62734 * 15 5 3 17 17 O 1.21684 * 120.00175 * 5.19280 * 16 15 5 18 18 C 1.46375 * 120.00069 * 185.19048 * 16 15 5 19 19 H 1.08003 * 120.00002 * 350.15950 * 18 16 15 20 20 C 1.40046 * 120.00344 * 169.87416 * 18 16 15 21 21 N 1.30679 * 119.99728 * 0.28157 * 20 18 16 22 22 Si 1.86802 * 120.00280 * 180.27770 * 20 18 16 23 23 H 1.48493 * 109.46872 * 60.00303 * 22 20 18 24 24 H 1.48501 * 109.46976 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47029 * 300.00168 * 22 20 18 26 26 H 1.09003 * 109.47520 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47198 * 300.00416 * 1 2 3 28 28 H 1.09005 * 109.47110 * 60.00538 * 1 2 3 29 29 H 1.08995 * 109.63748 * 54.55668 * 7 5 3 30 30 H 1.08997 * 109.45649 * 294.43201 * 7 5 3 31 31 H 0.96701 * 117.00219 * 179.97438 * 12 10 8 32 32 H 1.08998 * 109.49847 * 301.41459 * 13 8 7 33 33 H 1.09002 * 109.52488 * 181.32949 * 13 8 7 34 34 H 1.08997 * 109.58583 * 185.58203 * 14 13 8 35 35 H 1.09001 * 109.70367 * 65.22532 * 14 13 8 36 36 H 0.96993 * 119.99828 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9865 0.2795 0.1436 7 6 4.0531 1.8550 -1.3372 8 6 5.5688 2.0579 -1.2768 9 1 6.0547 1.1046 -1.0688 10 6 6.0566 2.5924 -2.5987 11 8 5.2726 2.7915 -3.4961 12 8 7.3620 2.8478 -2.7788 13 6 5.9078 3.0557 -0.1670 14 6 5.4411 2.4937 1.1796 15 7 4.0135 2.1600 1.0835 16 6 3.1317 2.6519 1.9763 17 8 1.9703 2.2901 1.9470 18 6 3.5712 3.6213 2.9811 19 1 4.6240 3.8233 3.1124 20 6 2.6262 4.2913 3.7682 21 7 1.3524 4.0469 3.6093 22 14 3.1867 5.5341 5.0452 23 1 3.9362 6.6275 4.3761 24 1 2.0018 6.0985 5.7400 25 1 4.0676 4.8637 6.0351 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 3.5649 2.8121 -1.5205 30 1 3.8106 1.1626 -2.1433 31 1 7.6273 3.1891 -3.6437 32 1 5.4021 4.0016 -0.3613 33 1 6.9853 3.2180 -0.1397 34 1 5.5900 3.2411 1.9588 35 1 6.0108 1.5962 1.4205 36 1 0.6979 4.5106 4.1546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606371567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -192.996974 kcal Electronic energy + Delta-G solvation = -23920.765526 eV Core-core repulsion = 20178.033010 eV Total energy + Delta-G solvation = -3742.732516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.63072 -39.75710 -38.02190 -36.28850 -35.81213 -35.22362 -32.64510 -32.06264 -31.20800 -27.34698 -26.68837 -25.59712 -23.71267 -22.16728 -20.93810 -20.25461 -18.80896 -18.04552 -17.33056 -16.57233 -16.37981 -15.80712 -15.56163 -15.44134 -15.12161 -14.53728 -14.22851 -13.81007 -13.53417 -13.35978 -13.09243 -12.61222 -12.46154 -12.20320 -11.72219 -11.56737 -11.44856 -11.43287 -11.24042 -11.06233 -10.88698 -10.82987 -10.67679 -10.46460 -10.29383 -10.02066 -9.79421 -9.24161 -8.86463 -7.56236 -7.30919 -6.21106 -4.67599 2.19883 2.92883 3.13092 3.15886 3.19676 3.22298 3.58711 4.03675 4.39485 4.54814 4.71077 4.85193 5.05801 5.30327 5.42056 5.51192 5.60975 5.66421 5.70817 5.73724 5.87265 5.94908 5.98173 6.03852 6.18035 6.31384 6.32632 6.43762 6.55884 7.26225 7.38612 7.43331 7.86809 7.97662 8.21024 8.87453 8.99872 9.27922 10.50946 10.70179 Molecular weight = 285.11amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.007051 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.133286 B = 3969.855797 C = 5550.657083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.374 6.374 3 C 0.469 3.531 4 O -0.457 6.457 5 C 0.168 3.832 6 H 0.081 0.919 7 C -0.107 4.107 8 C -0.072 4.072 9 H 0.111 0.889 10 C 0.485 3.515 11 O -0.515 6.515 12 O -0.516 6.516 13 C -0.128 4.128 14 C 0.127 3.873 15 N -0.635 5.635 16 C 0.554 3.446 17 O -0.542 6.542 18 C -0.542 4.542 19 H 0.074 0.926 20 C 0.088 3.912 21 N -0.763 5.763 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.267 1.267 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.406 0.594 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.052 0.948 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.838 -4.920 -8.022 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.292 6.292 3 C 0.309 3.691 4 O -0.339 6.339 5 C 0.062 3.938 6 H 0.098 0.902 7 C -0.146 4.146 8 C -0.091 4.091 9 H 0.129 0.871 10 C 0.327 3.673 11 O -0.403 6.403 12 O -0.327 6.327 13 C -0.167 4.167 14 C 0.003 3.997 15 N -0.377 5.377 16 C 0.361 3.639 17 O -0.424 6.424 18 C -0.578 4.578 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.391 5.391 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.363 -4.847 -7.818 12.432 hybrid contribution 0.343 0.943 -0.025 1.004 sum 8.706 -3.904 -7.844 12.352 Atomic orbital electron populations 1.23001 0.77383 1.01940 1.02422 1.86343 1.22669 1.34409 1.85829 1.22511 0.90662 0.81623 0.74273 1.90709 1.66180 1.35690 1.41349 1.20206 0.88740 0.95611 0.89228 0.90159 1.21825 0.92808 1.03751 0.96175 1.20995 0.97047 1.01474 0.89609 0.87072 1.23618 0.79511 0.73865 0.90301 1.90720 1.56149 1.48996 1.44394 1.84550 1.27809 1.78085 1.42302 1.22039 1.01839 0.98375 0.94467 1.21493 0.81844 1.00138 0.96191 1.48411 1.07830 1.52411 1.29088 1.18334 0.84003 0.81280 0.80331 1.90696 1.17926 1.60722 1.73006 1.20822 0.93816 1.24075 1.19099 0.90835 1.25707 0.94419 0.96417 0.96690 1.70001 1.01128 1.34555 1.33373 0.86441 0.78776 0.80836 0.80773 1.19272 1.20588 1.19220 0.89464 0.91586 0.93038 0.89567 0.90289 0.73556 0.90647 0.89988 0.87603 0.93009 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.56 101.05 1.07 1.89 16 2 O -0.37 -7.72 10.56 -39.24 -0.41 -8.13 16 3 C 0.47 10.83 4.99 36.01 0.18 11.01 16 4 O -0.46 -12.54 13.65 -27.22 -0.37 -12.91 16 5 C 0.17 3.26 3.36 -68.53 -0.23 3.03 16 6 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 7 C -0.11 -1.76 3.94 -26.39 -0.10 -1.86 16 8 C -0.07 -0.95 2.59 -91.73 -0.24 -1.18 16 9 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 10 C 0.48 6.27 7.63 36.01 0.27 6.55 16 11 O -0.51 -8.33 16.73 -18.74 -0.31 -8.65 16 12 O -0.52 -4.95 13.30 -39.25 -0.52 -5.48 16 13 C -0.13 -1.76 5.30 -26.61 -0.14 -1.90 16 14 C 0.13 2.09 6.35 -3.71 -0.02 2.07 16 15 N -0.64 -13.78 2.97 -167.92 -0.50 -14.27 16 16 C 0.55 15.34 7.22 -12.99 -0.09 15.25 16 17 O -0.54 -17.00 10.39 -20.37 -0.21 -17.22 16 18 C -0.54 -14.73 8.85 -35.63 -0.32 -15.04 16 19 H 0.07 1.77 5.69 -52.48 -0.30 1.48 16 20 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 21 N -0.76 -22.80 11.88 55.55 0.66 -22.14 16 22 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.34 8.13 -51.93 -0.42 0.91 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 29 H 0.09 1.68 8.12 -51.93 -0.42 1.26 16 30 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.41 2.18 9.10 45.56 0.41 2.60 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.11 1.84 5.32 -51.93 -0.28 1.57 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -38.15 306.28 -5.31 -43.46 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.51 Total: 3.79 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 0.28 Total: 22.13 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.16 Total: -36.42 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -1.83 Total: -52.38 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.15 -5.31 -43.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606371567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.534 kcal (2) G-P(sol) polarization free energy of solvation -38.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds