Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00036 * 2 1 4 4 O 1.20830 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00117 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.70146 * 351.90391 * 5 3 2 7 7 C 1.53622 * 109.66588 * 112.49974 * 5 3 2 8 8 C 1.53045 * 109.24148 * 174.54914 * 7 5 3 9 9 H 1.09003 * 109.45545 * 58.52880 * 8 7 5 10 10 C 1.50699 * 109.44968 * 178.49486 * 8 7 5 11 11 O 1.20817 * 119.99905 * 0.05979 * 10 8 7 12 12 O 1.34227 * 119.99831 * 180.02562 * 10 8 7 13 13 C 1.53037 * 109.53889 * 298.51101 * 8 7 5 14 14 C 1.53195 * 109.31298 * 61.36341 * 13 8 7 15 15 N 1.46927 * 109.58423 * 231.55028 * 5 3 2 16 16 C 1.34776 * 120.63104 * 6.62734 * 15 5 3 17 17 O 1.21684 * 120.00175 * 5.19280 * 16 15 5 18 18 C 1.46375 * 120.00069 * 185.19048 * 16 15 5 19 19 H 1.08003 * 120.00002 * 350.15950 * 18 16 15 20 20 C 1.40046 * 120.00344 * 169.87416 * 18 16 15 21 21 N 1.30679 * 119.99728 * 0.28157 * 20 18 16 22 22 Si 1.86802 * 120.00280 * 180.27770 * 20 18 16 23 23 H 1.48493 * 109.46872 * 60.00303 * 22 20 18 24 24 H 1.48501 * 109.46976 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47029 * 300.00168 * 22 20 18 26 26 H 1.09003 * 109.47520 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47198 * 300.00416 * 1 2 3 28 28 H 1.09005 * 109.47110 * 60.00538 * 1 2 3 29 29 H 1.08995 * 109.63748 * 54.55668 * 7 5 3 30 30 H 1.08997 * 109.45649 * 294.43201 * 7 5 3 31 31 H 0.96701 * 117.00219 * 179.97438 * 12 10 8 32 32 H 1.08998 * 109.49847 * 301.41459 * 13 8 7 33 33 H 1.09002 * 109.52488 * 181.32949 * 13 8 7 34 34 H 1.08997 * 109.58583 * 185.58203 * 14 13 8 35 35 H 1.09001 * 109.70367 * 65.22532 * 14 13 8 36 36 H 0.96993 * 119.99828 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9865 0.2795 0.1436 7 6 4.0531 1.8550 -1.3372 8 6 5.5688 2.0579 -1.2768 9 1 6.0547 1.1046 -1.0688 10 6 6.0566 2.5924 -2.5987 11 8 5.2726 2.7915 -3.4961 12 8 7.3620 2.8478 -2.7788 13 6 5.9078 3.0557 -0.1670 14 6 5.4411 2.4937 1.1796 15 7 4.0135 2.1600 1.0835 16 6 3.1317 2.6519 1.9763 17 8 1.9703 2.2901 1.9470 18 6 3.5712 3.6213 2.9811 19 1 4.6240 3.8233 3.1124 20 6 2.6262 4.2913 3.7682 21 7 1.3524 4.0469 3.6093 22 14 3.1867 5.5341 5.0452 23 1 3.9362 6.6275 4.3761 24 1 2.0018 6.0985 5.7400 25 1 4.0676 4.8637 6.0351 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 3.5649 2.8121 -1.5205 30 1 3.8106 1.1626 -2.1433 31 1 7.6273 3.1891 -3.6437 32 1 5.4021 4.0016 -0.3613 33 1 6.9853 3.2180 -0.1397 34 1 5.5900 3.2411 1.9588 35 1 6.0108 1.5962 1.4205 36 1 0.6979 4.5106 4.1546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606371567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -221.947878 kcal Electronic energy + Delta-G solvation = -23922.020932 eV Core-core repulsion = 20178.033010 eV Total energy + Delta-G solvation = -3743.987921 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.95495 -41.18101 -39.64786 -37.70486 -37.06346 -37.01897 -34.65421 -33.65483 -32.66224 -28.88421 -28.53267 -27.07956 -25.14766 -23.41315 -22.71664 -21.51825 -20.43281 -19.13293 -18.85349 -18.27185 -17.88840 -17.52777 -17.07244 -16.79636 -16.60064 -16.21583 -15.80258 -15.32172 -14.83838 -14.67644 -14.45095 -14.33629 -14.10871 -13.75636 -13.18993 -13.08059 -13.03142 -12.90197 -12.67444 -12.54232 -12.47375 -12.34340 -12.10412 -11.92146 -11.75678 -11.55491 -11.34417 -11.03862 -10.87508 -9.55549 -9.12481 -8.24540 -6.79165 1.21051 1.38825 1.42454 1.48663 1.54512 1.78990 2.22678 2.24067 2.52033 2.76255 3.51555 3.63572 3.71333 3.89825 4.04676 4.12274 4.13959 4.30797 4.40818 4.48472 4.53410 4.66969 4.71202 4.80145 4.84561 4.98244 5.03812 5.32765 5.42220 5.60618 5.64368 5.71739 6.12931 6.27470 6.90425 7.03293 7.13834 7.38182 8.49520 8.70111 Molecular weight = 285.11amu Principal moments of inertia in cm(-1) A = 0.014109 B = 0.007051 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.133286 B = 3969.855797 C = 5550.657083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.461 3.539 4 O -0.512 6.512 5 C 0.165 3.835 6 H 0.119 0.881 7 C -0.097 4.097 8 C -0.067 4.067 9 H 0.154 0.846 10 C 0.496 3.504 11 O -0.555 6.555 12 O -0.501 6.501 13 C -0.118 4.118 14 C 0.120 3.880 15 N -0.640 5.640 16 C 0.534 3.466 17 O -0.591 6.591 18 C -0.566 4.566 19 H 0.101 0.899 20 C 0.027 3.973 21 N -0.825 5.825 22 Si 0.993 3.007 23 H -0.254 1.254 24 H -0.282 1.282 25 H -0.249 1.249 26 H 0.138 0.862 27 H 0.029 0.971 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.428 0.572 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 -5.645 -8.191 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.290 6.290 3 C 0.304 3.696 4 O -0.398 6.398 5 C 0.060 3.940 6 H 0.137 0.863 7 C -0.136 4.136 8 C -0.086 4.086 9 H 0.171 0.829 10 C 0.340 3.660 11 O -0.446 6.446 12 O -0.314 6.314 13 C -0.156 4.156 14 C -0.002 4.002 15 N -0.380 5.380 16 C 0.340 3.660 17 O -0.476 6.476 18 C -0.602 4.602 19 H 0.118 0.882 20 C -0.187 4.187 21 N -0.454 5.454 22 Si 0.813 3.187 23 H -0.178 1.178 24 H -0.208 1.208 25 H -0.173 1.173 26 H 0.156 0.844 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.289 0.711 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.135 -5.602 -8.029 15.592 hybrid contribution -0.765 1.078 -0.074 1.324 sum 11.370 -4.525 -8.104 14.677 Atomic orbital electron populations 1.23239 0.76013 1.04765 1.00936 1.86337 1.24127 1.33318 1.85211 1.23442 0.92386 0.81334 0.72417 1.90676 1.67708 1.37552 1.43851 1.20574 0.86346 0.97176 0.89915 0.86339 1.21687 0.95323 1.01743 0.94806 1.20951 0.94544 1.03372 0.89722 0.82890 1.23382 0.80138 0.72969 0.89511 1.90729 1.57415 1.50775 1.45668 1.84477 1.25494 1.77458 1.43979 1.21941 1.03814 0.96912 0.92937 1.21806 0.79075 1.01746 0.97552 1.48226 1.09361 1.52069 1.28347 1.18737 0.84150 0.81616 0.81493 1.90662 1.20204 1.62286 1.74470 1.21438 0.95340 1.24016 1.19377 0.88154 1.26978 0.94143 0.98563 0.99029 1.70221 1.03067 1.36815 1.35345 0.85135 0.78326 0.77763 0.77490 1.17786 1.20769 1.17285 0.84364 0.95214 0.92460 0.93698 0.88684 0.71050 0.93529 0.85871 0.88872 0.89030 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 10.56 113.37 1.20 2.79 16 2 O -0.37 -15.54 10.56 -51.35 -0.54 -16.08 16 3 C 0.46 21.99 4.99 71.24 0.36 22.35 16 4 O -0.51 -29.89 13.65 30.05 0.41 -29.48 16 5 C 0.17 6.27 3.36 44.37 0.15 6.42 16 6 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 7 C -0.10 -3.09 3.94 30.82 0.12 -2.97 16 8 C -0.07 -1.53 2.59 -11.51 -0.03 -1.56 16 9 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 10 C 0.50 11.29 7.63 71.24 0.54 11.83 16 11 O -0.55 -17.13 16.73 21.99 0.37 -16.76 16 12 O -0.50 -7.39 13.30 -51.38 -0.68 -8.08 16 13 C -0.12 -2.85 5.30 30.67 0.16 -2.69 16 14 C 0.12 3.62 6.35 86.36 0.55 4.17 16 15 N -0.64 -27.50 2.97 -803.41 -2.38 -29.88 16 16 C 0.53 30.51 7.22 86.36 0.62 31.13 16 17 O -0.59 -39.08 10.39 20.15 0.21 -38.87 16 18 C -0.57 -31.22 8.85 24.83 0.22 -31.00 16 19 H 0.10 4.77 5.69 -2.91 -0.02 4.75 16 20 C 0.03 1.53 5.50 85.30 0.47 2.00 16 21 N -0.82 -51.82 11.88 21.84 0.26 -51.56 16 22 Si 0.99 41.04 29.56 68.60 2.03 43.07 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 26 H 0.14 3.48 8.14 -2.39 -0.02 3.46 16 27 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 28 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 29 H 0.04 1.80 8.12 -2.39 -0.02 1.78 16 30 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 31 H 0.43 2.83 9.10 -74.06 -0.67 2.16 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.12 2.04 8.09 -2.39 -0.02 2.02 16 34 H 0.09 3.05 5.32 -2.39 -0.01 3.04 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.27 15.61 8.29 -92.71 -0.77 14.84 16 Total: -1.00 -91.15 306.28 4.48 -86.67 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.45 Total: 18.49 kcal Atomic # 6 Polarization: 38.12 SS G_CDS: 4.36 Total: 42.48 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.12 Total: -81.45 kcal Atomic # 8 Polarization: -109.03 SS G_CDS: -0.24 Total: -109.27 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -91.15 4.48 -86.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606371567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.278 kcal (2) G-P(sol) polarization free energy of solvation -91.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds