Wall clock time and date at job start Wed Apr 15 2020 11:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48507 * 109.46919 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47453 * 300.00111 * 3 2 1 6 6 H 1.48500 * 109.47068 * 60.00457 * 3 2 1 7 7 C 1.38948 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00141 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00053 * 179.97438 * 10 9 7 13 13 O 1.45190 * 109.47124 * 180.02562 * 12 10 9 14 14 C 1.34229 * 117.00093 * 180.02562 * 13 12 10 15 15 O 1.20825 * 120.00086 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00069 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47188 * 180.02562 * 16 14 13 18 18 C 1.46380 * 119.33103 * 89.99819 * 17 16 14 19 19 C 1.53242 * 109.15205 * 150.96490 * 18 17 16 20 20 C 1.53242 * 108.56481 * 55.48200 * 19 18 17 21 21 N 1.46382 * 109.15108 * 304.51860 * 20 19 18 22 22 C 1.34136 * 121.34052 * 29.31730 * 21 20 19 23 23 O 1.21588 * 118.69512 * 179.14852 * 22 21 20 24 24 H 0.97001 * 119.99504 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99658 * 0.02562 * 9 7 2 26 26 H 1.09006 * 109.46581 * 60.00026 * 12 10 9 27 27 H 1.09004 * 109.47194 * 300.00484 * 12 10 9 28 28 H 1.09001 * 109.47294 * 60.00512 * 16 14 13 29 29 H 1.09004 * 109.47516 * 299.99851 * 16 14 13 30 30 H 1.09002 * 109.52172 * 31.06697 * 18 17 16 31 31 H 1.08994 * 109.53014 * 270.86855 * 18 17 16 32 32 H 1.09001 * 109.62162 * 295.75706 * 19 18 17 33 33 H 1.08998 * 109.77253 * 175.29619 * 19 18 17 34 34 H 1.08997 * 109.52104 * 184.61558 * 20 19 18 35 35 H 1.09000 * 109.57241 * 64.45514 * 20 19 18 36 36 H 0.97001 * 119.32574 * 209.03079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 8 2.1872 -5.9665 0.0005 14 6 1.6742 -7.2069 0.0006 15 8 0.4764 -7.3653 0.0006 16 6 2.5922 -8.4020 0.0005 17 7 1.7943 -9.6307 -0.0001 18 6 1.4041 -10.2317 -1.2765 19 6 1.2582 -11.7464 -1.0953 20 6 0.2633 -12.0083 0.0403 21 7 0.7154 -11.3108 1.2453 22 6 1.4314 -10.1791 1.1691 23 8 1.7687 -9.6311 2.2008 24 1 -0.4849 0.8401 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6168 -4.9208 -0.8898 27 1 0.6174 -4.9205 0.8903 28 1 3.2210 -8.3773 0.8905 29 1 3.2210 -8.3772 -0.8896 30 1 2.1696 -10.0264 -2.0249 31 1 0.4530 -9.8105 -1.6019 32 1 2.2257 -12.1795 -0.8415 33 1 0.8874 -12.1940 -2.0174 34 1 0.2094 -13.0789 0.2377 35 1 -0.7222 -11.6404 -0.2454 36 1 0.4892 -11.6722 2.1166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318340326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:16 Heat of formation + Delta-G solvation = -167.692931 kcal Electronic energy + Delta-G solvation = -22146.382975 eV Core-core repulsion = 18437.040476 eV Total energy + Delta-G solvation = -3709.342499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10779 -41.23313 -40.01372 -37.68067 -37.47728 -36.05444 -35.95754 -33.43694 -32.14531 -30.67755 -29.08217 -26.72021 -26.32043 -24.16021 -22.44013 -21.45593 -20.10899 -19.98235 -19.04579 -18.66649 -18.40878 -17.83621 -17.63620 -17.38012 -16.70818 -16.30137 -15.90814 -15.83153 -15.64226 -15.27056 -14.81129 -14.67033 -14.39725 -14.19401 -13.60312 -13.54909 -13.32104 -12.94939 -12.81055 -12.47936 -12.35740 -12.22655 -12.11020 -11.89818 -11.83386 -11.59836 -11.29650 -10.54665 -10.24374 -10.13530 -9.79867 -8.53775 -6.04642 1.04758 1.12687 1.33889 1.42604 1.57298 1.76917 1.84574 2.07314 2.30492 2.82969 3.03278 3.11523 3.63975 3.77886 3.94621 3.96952 4.02952 4.11907 4.18817 4.29765 4.33799 4.47918 4.67730 4.75963 4.83474 5.18622 5.22900 5.30291 5.36175 5.50633 5.87490 6.04800 6.43542 6.60273 6.69368 7.01205 7.37576 7.43689 7.90867 8.63650 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.047893 B = 0.002790 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.500262 B =10035.220205 C =10073.026062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.342 6.342 14 C 0.440 3.560 15 O -0.532 6.532 16 C 0.145 3.855 17 N -0.607 5.607 18 C 0.098 3.902 19 C -0.142 4.142 20 C 0.100 3.900 21 N -0.729 5.729 22 C 0.703 3.297 23 O -0.648 6.648 24 H 0.281 0.719 25 H 0.399 0.601 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.169 0.831 30 H 0.113 0.887 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 -25.682 -5.652 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.005 4.005 13 O -0.256 6.256 14 C 0.283 3.717 15 O -0.421 6.421 16 C 0.019 3.981 17 N -0.344 5.344 18 C -0.023 4.023 19 C -0.180 4.180 20 C -0.023 4.023 21 N -0.386 5.386 22 C 0.404 3.596 23 O -0.530 6.530 24 H 0.091 0.909 25 H 0.234 0.766 26 H 0.126 0.874 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.186 0.814 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.550 -25.232 -5.335 25.796 hybrid contribution -0.777 1.005 0.584 1.398 sum -1.327 -24.227 -4.751 24.724 Atomic orbital electron populations 1.69687 1.07017 1.29701 1.49252 1.26165 0.96606 1.02680 0.95612 0.84773 0.78077 0.76416 0.78465 1.19479 1.19262 1.19528 1.19777 0.92971 0.83320 1.50575 0.89688 1.41757 1.09540 1.04232 1.64038 1.20063 0.88081 0.85311 0.84146 1.90523 1.15337 1.87673 1.56694 1.22468 0.90290 0.82808 1.04906 1.86548 1.40676 1.14951 1.83468 1.25361 0.89807 0.85123 0.71437 1.90615 1.18106 1.86759 1.46624 1.20998 0.90563 0.77308 1.09192 1.46602 1.56757 1.24808 1.06203 1.22041 1.02117 0.94304 0.83840 1.22227 1.00978 0.93870 1.00936 1.21881 0.97669 0.98804 0.83904 1.44964 1.56931 1.24836 1.11845 1.15759 0.79080 0.81433 0.83377 1.90944 1.62568 1.64836 1.34695 0.90946 0.76635 0.87382 0.88661 0.85867 0.81394 0.86861 0.92130 0.89924 0.85010 0.86624 0.91517 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 8 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 9 N -0.56 -29.47 5.29 -306.98 -1.62 -31.09 16 10 C 0.44 22.12 7.86 87.66 0.69 22.81 16 11 O -0.62 -35.85 16.08 15.72 0.25 -35.60 16 12 C 0.07 2.91 5.94 71.24 0.42 3.34 16 13 O -0.34 -13.22 9.75 -45.05 -0.44 -13.66 16 14 C 0.44 14.47 8.02 71.24 0.57 15.04 16 15 O -0.53 -19.72 16.18 21.97 0.36 -19.36 16 16 C 0.15 3.38 5.94 85.63 0.51 3.89 16 17 N -0.61 -13.06 2.30 -845.65 -1.95 -15.01 16 18 C 0.10 1.18 6.55 86.48 0.57 1.75 16 19 C -0.14 -0.82 6.20 30.76 0.19 -0.63 16 20 C 0.10 0.81 7.21 86.48 0.62 1.43 16 21 N -0.73 -12.61 5.58 -479.84 -2.68 -15.29 16 22 C 0.70 18.58 8.18 179.45 1.47 20.05 16 23 O -0.65 -23.70 16.50 -3.99 -0.07 -23.77 16 24 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 25 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 26 H 0.11 3.81 8.13 -2.38 -0.02 3.79 16 27 H 0.10 3.62 8.13 -2.39 -0.02 3.60 16 28 H 0.12 3.13 7.32 -2.39 -0.02 3.11 16 29 H 0.17 2.34 7.86 -2.38 -0.02 2.32 16 30 H 0.11 0.77 7.86 -2.39 -0.02 0.75 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.42 6.44 8.88 -92.71 -0.82 5.62 16 Total: -1.00 -83.76 318.96 2.07 -81.69 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.42 Total: 27.52 kcal Atomic # 6 Polarization: 42.80 SS G_CDS: 6.32 Total: 49.13 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -5.97 Total: -110.57 kcal Atomic # 8 Polarization: -92.49 SS G_CDS: 0.10 Total: -92.39 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -83.76 2.07 -81.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318340326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.999 kcal (2) G-P(sol) polarization free energy of solvation -83.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds