Wall clock time and date at job start Wed Apr 15 2020 11:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47215 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00212 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00018 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.47024 * 125.64743 * 359.68820 * 16 14 13 18 18 C 1.54311 * 107.27644 * 180.97010 * 17 16 14 19 19 C 1.55155 * 102.86520 * 22.53011 * 18 17 16 20 20 H 1.08994 * 111.00908 * 82.37432 * 19 18 17 21 21 C 1.50703 * 111.03926 * 206.21956 * 19 18 17 22 22 O 1.20827 * 119.99834 * 353.66033 * 21 19 18 23 23 O 1.34224 * 120.00209 * 173.66706 * 21 19 18 24 24 C 1.47426 * 125.65071 * 180.02562 * 16 14 13 25 25 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 27 27 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 28 28 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 29 29 H 0.97005 * 119.99723 * 359.97438 * 13 12 10 30 30 H 1.09000 * 109.88505 * 300.51618 * 17 16 14 31 31 H 1.09000 * 109.88334 * 61.68283 * 17 16 14 32 32 H 1.09004 * 110.92719 * 264.11544 * 18 17 16 33 33 H 1.09001 * 110.74751 * 140.85748 * 18 17 16 34 34 H 0.96705 * 117.00261 * 179.97438 * 23 21 19 35 35 H 1.08999 * 110.36445 * 274.67256 * 24 16 14 36 36 H 1.08997 * 110.36693 * 36.88732 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1959 -5.9764 -0.0256 14 6 1.7467 -7.2471 -0.0321 15 8 0.5513 -7.4693 -0.0332 16 7 2.6225 -8.2714 -0.0364 17 6 4.0874 -8.1463 -0.0411 18 6 4.6693 -9.5752 -0.0698 19 6 3.5028 -10.4115 -0.6591 20 1 3.4871 -10.3478 -1.7471 21 6 3.5830 -11.8465 -0.2060 22 8 4.5391 -12.2276 0.4270 23 8 2.5925 -12.7013 -0.5057 24 6 2.2703 -9.7030 -0.0441 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0068 27 1 0.6169 -4.9255 0.8690 28 1 0.6176 -4.9158 -0.9109 29 1 3.1496 -5.7991 -0.0243 30 1 4.4096 -7.5950 -0.9245 31 1 4.4184 -7.6315 0.8609 32 1 4.9176 -9.9148 0.9358 33 1 5.5440 -9.6229 -0.7184 34 1 2.6888 -13.6116 -0.1937 35 1 2.0977 -10.0566 0.9723 36 1 1.3868 -9.8730 -0.6594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:24 Heat of formation + Delta-G solvation = -153.012032 kcal Electronic energy + Delta-G solvation = -21863.588963 eV Core-core repulsion = 18154.883075 eV Total energy + Delta-G solvation = -3708.705888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02385 -39.97182 -38.40231 -37.41650 -36.48479 -34.46500 -33.70430 -32.06443 -31.35803 -29.65592 -27.67491 -25.05310 -24.01665 -23.16565 -20.78290 -19.87015 -19.62595 -18.51039 -18.40659 -17.89455 -17.47431 -16.24919 -15.89286 -15.78886 -15.38994 -14.86265 -14.68923 -14.25088 -14.05938 -13.89035 -13.65035 -13.38292 -13.06532 -12.94839 -12.24185 -12.05891 -11.98141 -11.86920 -11.75624 -11.63916 -11.30291 -11.14957 -10.97310 -10.41595 -10.33609 -10.09836 -9.65522 -9.00313 -8.63915 -8.54882 -8.10815 -6.52190 -3.94158 1.71614 2.37272 2.76993 3.09671 3.22114 3.28683 3.29810 3.73847 3.79953 4.04849 4.14928 4.24551 4.53250 4.80881 4.88423 4.89799 4.95877 5.16582 5.34421 5.45720 5.47083 5.53873 5.71626 5.86608 5.98734 6.03203 6.06043 6.10529 6.71019 7.04990 7.45047 7.45610 7.91774 8.09421 8.44254 8.70546 9.04014 9.38720 9.86405 10.64794 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.050349 B = 0.002692 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.988483 B =10396.855723 C =10878.006028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.720 5.720 14 C 0.725 3.275 15 O -0.592 6.592 16 N -0.640 5.640 17 C 0.096 3.904 18 C -0.112 4.112 19 C -0.102 4.102 20 H 0.126 0.874 21 C 0.495 3.505 22 O -0.510 6.510 23 O -0.512 6.512 24 C 0.144 3.856 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -20.458 -1.499 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.378 5.378 14 C 0.426 3.574 15 O -0.470 6.470 16 N -0.380 5.380 17 C -0.027 4.027 18 C -0.149 4.149 19 C -0.122 4.122 20 H 0.144 0.856 21 C 0.336 3.664 22 O -0.398 6.398 23 O -0.324 6.324 24 C 0.020 3.980 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.245 0.755 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.271 0.729 35 H 0.088 0.912 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.076 -20.012 -1.453 20.696 hybrid contribution 0.324 0.325 0.178 0.493 sum 5.400 -19.686 -1.275 20.453 Atomic orbital electron populations 1.69622 1.06014 1.28435 1.49379 1.25334 0.95669 0.99946 0.96816 0.85756 0.79669 0.80822 0.77828 1.19140 1.20613 1.20617 1.19774 0.93475 0.81967 1.48139 0.87624 1.41794 1.09512 1.04450 1.62622 1.19743 0.88284 0.84984 0.85548 1.90490 1.13743 1.86854 1.57384 1.20818 0.91199 0.84791 1.03267 1.44772 1.11403 1.03066 1.78510 1.15294 0.84116 0.79915 0.78036 1.90924 1.13480 1.83849 1.58784 1.47397 1.05892 1.05056 1.79665 1.22089 0.80222 0.97429 1.02951 1.22617 0.96516 0.92405 1.03407 1.22248 0.98957 0.87332 1.03632 0.85590 1.22965 0.79305 0.88329 0.75776 1.90745 1.33195 1.78635 1.37201 1.84558 1.47670 1.25754 1.74370 1.21792 0.95985 0.79113 1.01124 0.91627 0.76997 0.89908 0.89882 0.75462 0.90639 0.90545 0.88975 0.88828 0.72874 0.91222 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.52 5.29 -10.96 -0.06 -13.57 16 10 C 0.43 9.75 7.85 -10.98 -0.09 9.67 16 11 O -0.60 -15.12 15.24 5.55 0.08 -15.04 16 12 C 0.13 2.36 6.15 -5.19 -0.03 2.33 16 13 N -0.72 -12.21 5.49 -66.42 -0.36 -12.58 16 14 C 0.72 11.94 8.49 -86.93 -0.74 11.20 16 15 O -0.59 -11.61 16.60 5.28 0.09 -11.52 16 16 N -0.64 -7.94 3.33 -176.26 -0.59 -8.52 16 17 C 0.10 0.90 6.14 -3.07 -0.02 0.89 16 18 C -0.11 -0.83 6.03 -24.90 -0.15 -0.98 16 19 C -0.10 -0.77 3.54 -89.63 -0.32 -1.08 16 20 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 21 C 0.49 3.97 7.64 36.01 0.27 4.25 16 22 O -0.51 -5.50 16.55 -18.75 -0.31 -5.81 16 23 O -0.51 -3.08 13.41 -39.24 -0.53 -3.60 16 24 C 0.14 1.44 6.36 -2.54 -0.02 1.42 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.40 9.39 7.90 -40.82 -0.32 9.06 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.41 6.74 6.42 -40.82 -0.26 6.48 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.74 7.50 -51.93 -0.39 0.36 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.41 0.77 9.10 45.56 0.41 1.19 16 35 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 36 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -34.23 318.52 -5.94 -40.17 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -3.44 Total: 13.44 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: -1.32 Total: 19.90 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.28 Total: -57.73 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.66 Total: -35.97 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.23 -5.94 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.844 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds