Wall clock time and date at job start Wed Apr 15 2020 11:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00130 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00177 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47215 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00212 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00018 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00172 * 180.02562 * 14 13 12 17 17 C 1.47024 * 125.64743 * 359.68820 * 16 14 13 18 18 C 1.54311 * 107.27644 * 180.97010 * 17 16 14 19 19 C 1.55155 * 102.86520 * 22.53011 * 18 17 16 20 20 H 1.08994 * 111.00908 * 82.37432 * 19 18 17 21 21 C 1.50703 * 111.03926 * 206.21956 * 19 18 17 22 22 O 1.20827 * 119.99834 * 353.66033 * 21 19 18 23 23 O 1.34224 * 120.00209 * 173.66706 * 21 19 18 24 24 C 1.47426 * 125.65071 * 180.02562 * 16 14 13 25 25 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 27 27 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 28 28 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 29 29 H 0.97005 * 119.99723 * 359.97438 * 13 12 10 30 30 H 1.09000 * 109.88505 * 300.51618 * 17 16 14 31 31 H 1.09000 * 109.88334 * 61.68283 * 17 16 14 32 32 H 1.09004 * 110.92719 * 264.11544 * 18 17 16 33 33 H 1.09001 * 110.74751 * 140.85748 * 18 17 16 34 34 H 0.96705 * 117.00261 * 179.97438 * 23 21 19 35 35 H 1.08999 * 110.36445 * 274.67256 * 24 16 14 36 36 H 1.08997 * 110.36693 * 36.88732 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1959 -5.9764 -0.0256 14 6 1.7467 -7.2471 -0.0321 15 8 0.5513 -7.4693 -0.0332 16 7 2.6225 -8.2714 -0.0364 17 6 4.0874 -8.1463 -0.0411 18 6 4.6693 -9.5752 -0.0698 19 6 3.5028 -10.4115 -0.6591 20 1 3.4871 -10.3478 -1.7471 21 6 3.5830 -11.8465 -0.2060 22 8 4.5391 -12.2276 0.4270 23 8 2.5925 -12.7013 -0.5057 24 6 2.2703 -9.7030 -0.0441 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0068 27 1 0.6169 -4.9255 0.8690 28 1 0.6176 -4.9158 -0.9109 29 1 3.1496 -5.7991 -0.0243 30 1 4.4096 -7.5950 -0.9245 31 1 4.4184 -7.6315 0.8609 32 1 4.9176 -9.9148 0.9358 33 1 5.5440 -9.6229 -0.7184 34 1 2.6888 -13.6116 -0.1937 35 1 2.0977 -10.0566 0.9723 36 1 1.3868 -9.8730 -0.6594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:23 Heat of formation + Delta-G solvation = -180.284370 kcal Electronic energy + Delta-G solvation = -21864.771580 eV Core-core repulsion = 18154.883075 eV Total energy + Delta-G solvation = -3709.888505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81333 -41.06585 -40.09109 -38.46501 -37.10842 -36.24395 -35.32460 -33.40105 -32.94504 -30.41939 -29.20119 -26.63646 -25.19412 -23.98248 -21.47266 -21.34704 -21.06457 -20.10615 -19.34872 -19.10907 -18.17937 -17.49199 -17.23399 -16.93865 -16.66896 -16.48409 -16.00437 -15.89563 -15.30642 -15.13927 -14.62809 -14.25543 -14.20081 -13.95676 -13.78269 -13.53593 -13.43256 -12.90562 -12.79399 -12.56207 -12.43969 -12.42845 -12.10286 -11.94415 -11.66746 -11.57026 -11.44060 -10.54999 -10.34000 -10.08662 -9.63233 -8.50207 -6.00193 1.05315 1.36021 1.40209 1.45431 1.58577 1.89685 2.01445 2.10790 2.29213 2.84860 3.14893 3.17212 3.27073 3.45870 3.93913 4.14099 4.18639 4.21292 4.40370 4.43492 4.46140 4.59435 4.69899 4.78303 4.89245 5.06386 5.18808 5.28392 5.39927 5.58429 5.90831 5.93238 6.48847 6.84348 6.96686 7.04581 7.39081 7.47584 7.95270 8.67002 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.050349 B = 0.002692 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.988483 B =10396.855723 C =10878.006028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.723 3.277 15 O -0.627 6.627 16 N -0.637 5.637 17 C 0.091 3.909 18 C -0.102 4.102 19 C -0.092 4.092 20 H 0.146 0.854 21 C 0.504 3.496 22 O -0.540 6.540 23 O -0.509 6.509 24 C 0.139 3.861 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.410 0.590 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.431 0.569 35 H 0.070 0.930 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -21.118 -1.918 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.012 3.988 13 N -0.378 5.378 14 C 0.424 3.576 15 O -0.508 6.508 16 N -0.375 5.375 17 C -0.031 4.031 18 C -0.140 4.140 19 C -0.112 4.112 20 H 0.164 0.836 21 C 0.346 3.654 22 O -0.430 6.430 23 O -0.323 6.323 24 C 0.016 3.984 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.248 0.752 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.293 0.707 35 H 0.088 0.912 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.703 -20.732 -1.875 21.584 hybrid contribution 0.123 0.408 0.311 0.528 sum 5.826 -20.324 -1.563 21.200 Atomic orbital electron populations 1.69686 1.07016 1.29562 1.49412 1.26134 0.96531 1.02692 0.95846 0.84809 0.78156 0.76741 0.78264 1.19375 1.19663 1.19721 1.19769 0.92958 0.83481 1.50207 0.89520 1.41839 1.09619 1.04582 1.63446 1.20380 0.88103 0.85845 0.83510 1.90466 1.15134 1.87535 1.57992 1.20620 0.90958 0.82982 1.04214 1.44684 1.11136 1.03058 1.78967 1.15367 0.84120 0.80186 0.77895 1.90894 1.15140 1.84369 1.60439 1.47424 1.06863 1.05141 1.78056 1.22298 0.78325 0.99083 1.03369 1.22582 0.97030 0.90705 1.03702 1.22209 0.97429 0.86942 1.04615 0.83622 1.22901 0.78992 0.88539 0.74937 1.90746 1.34426 1.79217 1.38562 1.84521 1.46737 1.27024 1.74012 1.21915 0.97105 0.77941 1.01407 0.91088 0.76675 0.88991 0.88795 0.75186 0.89802 0.90590 0.89527 0.86661 0.70710 0.91193 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.48 13.05 21.67 0.28 -48.20 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.85 5.29 -306.97 -1.62 -29.48 16 10 C 0.43 19.85 7.85 87.66 0.69 20.54 16 11 O -0.62 -31.72 15.24 -3.07 -0.05 -31.77 16 12 C 0.14 5.15 6.15 85.63 0.53 5.68 16 13 N -0.72 -24.01 5.49 -482.31 -2.65 -26.66 16 14 C 0.72 23.33 8.49 179.06 1.52 24.85 16 15 O -0.63 -24.36 16.60 -4.01 -0.07 -24.42 16 16 N -0.64 -15.05 3.33 -829.82 -2.76 -17.81 16 17 C 0.09 1.57 6.14 86.72 0.53 2.10 16 18 C -0.10 -1.30 6.03 31.78 0.19 -1.11 16 19 C -0.09 -1.18 3.54 -10.15 -0.04 -1.22 16 20 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 21 C 0.50 7.07 7.64 71.24 0.54 7.62 16 22 O -0.54 -10.74 16.55 21.96 0.36 -10.37 16 23 O -0.51 -5.02 13.41 -51.36 -0.69 -5.71 16 24 C 0.14 2.60 6.36 86.85 0.55 3.16 16 25 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 27 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.26 16 29 H 0.41 13.32 6.42 -92.70 -0.60 12.72 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.25 7.50 -2.38 -0.02 1.23 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.43 0.68 9.10 -74.05 -0.67 0.01 16 35 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 36 H 0.09 1.76 8.03 -2.39 -0.02 1.74 16 Total: -1.00 -72.73 318.52 -0.20 -72.94 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.85 Total: 33.98 kcal Atomic # 6 Polarization: 38.22 SS G_CDS: 5.80 Total: 44.02 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -6.75 Total: -122.15 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -0.44 Total: -72.28 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -72.73 -0.20 -72.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.347 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds