Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.99304 * 2 1 4 4 O 1.43510 * 110.00399 * 121.32512 * 2 1 3 5 5 C 1.43816 * 106.56091 * 149.97237 * 4 2 1 6 6 H 1.09003 * 112.26988 * 104.54080 * 5 4 2 7 7 O 1.43801 * 108.76314 * 228.53244 * 5 4 2 8 8 C 1.44305 * 107.18090 * 139.24304 * 7 5 4 9 9 H 1.08999 * 110.62123 * 78.44933 * 8 7 5 10 10 C 1.53008 * 110.62116 * 201.45406 * 8 7 5 11 11 H 1.08991 * 109.47073 * 58.81895 * 10 8 7 12 12 O 1.42902 * 109.46699 * 298.82136 * 10 8 7 13 13 C 1.50701 * 109.47223 * 178.82480 * 10 8 7 14 14 H 1.07997 * 120.00105 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99900 * 179.97438 * 13 10 8 16 16 N 1.31519 * 120.00295 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00239 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47296 * 119.99914 * 17 15 13 20 20 H 1.48495 * 109.47388 * 240.00309 * 17 15 13 21 21 C 1.54990 * 103.48708 * 319.95231 * 8 7 5 22 22 H 1.09001 * 110.87298 * 155.50668 * 21 8 7 23 23 N 1.46500 * 110.87365 * 279.19337 * 21 8 7 24 24 N 1.12400 * 120.00140 * 284.00552 * 23 21 8 25 25 N 5.81071 * 92.32761 * 204.31819 * 2 1 3 26 26 C 1.54616 * 102.11351 * 37.34747 * 21 8 7 27 27 H 1.09001 * 112.34258 * 100.58921 * 26 21 8 28 28 O 1.43567 * 109.24277 * 226.49772 * 26 21 8 29 29 H 1.09000 * 109.47070 * 300.13203 * 1 2 3 30 30 H 1.09008 * 109.46631 * 60.13118 * 1 2 3 31 31 H 1.08993 * 109.47450 * 180.13002 * 1 2 3 32 32 H 1.08994 * 109.47179 * 179.86877 * 3 2 1 33 33 H 1.09002 * 109.46987 * 299.87045 * 3 2 1 34 34 H 1.08999 * 109.46959 * 59.86852 * 3 2 1 35 35 H 0.96697 * 114.00337 * 300.00355 * 12 10 8 36 36 H 0.96991 * 120.00325 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0209 -0.7011 1.1519 5 6 3.2826 -1.2784 0.7736 6 1 4.1285 -0.7340 1.1935 7 8 3.2952 -2.6613 1.1675 8 6 3.9184 -3.4034 0.0982 9 1 5.0025 -3.2971 0.1382 10 6 3.5175 -4.8787 0.1611 11 1 2.4334 -4.9640 0.0878 12 8 3.9567 -5.4391 1.4001 13 6 4.1585 -5.6227 -0.9820 14 1 4.7891 -5.0961 -1.6830 15 6 3.9407 -6.9757 -1.1322 16 7 3.1732 -7.6171 -0.2783 17 14 4.7347 -7.8979 -2.5495 18 1 5.5445 -6.9547 -3.3618 19 1 5.6128 -8.9686 -2.0134 20 1 3.6784 -8.5033 -3.3997 21 6 3.3517 -2.7380 -1.1817 22 1 4.0252 -2.8843 -2.0263 23 7 2.0124 -3.2478 -1.4859 24 7 1.8892 -4.2693 -1.9383 25 7 1.7660 -5.2908 -2.3909 26 6 3.2945 -1.2475 -0.7744 27 1 4.1329 -0.6765 -1.1734 28 8 2.0212 -0.7023 -1.1522 29 1 -0.3633 0.5159 0.8888 30 1 -0.3633 0.5118 -0.8912 31 1 -0.3634 -1.0276 0.0023 32 1 3.1430 1.4279 0.0024 33 1 1.6963 1.9542 -0.8912 34 1 1.6925 1.9556 0.8888 35 1 4.9135 -5.3975 1.5335 36 1 3.0203 -8.5691 -0.3838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004530905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -55.659389 kcal Electronic energy + Delta-G solvation = -24560.295373 eV Core-core repulsion = 20855.811013 eV Total energy + Delta-G solvation = -3704.484360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93053 -40.80034 -37.95220 -35.46222 -35.35369 -34.62915 -32.36450 -32.21088 -30.55109 -28.52992 -27.47323 -25.79879 -23.73518 -22.05398 -21.44470 -20.68016 -18.50829 -17.54282 -17.16164 -17.01624 -16.76771 -16.48474 -15.55419 -15.10028 -15.05520 -14.73938 -14.60295 -14.43136 -13.99533 -13.22943 -13.01030 -12.69862 -12.53732 -12.36195 -12.15050 -12.12365 -12.07001 -11.75129 -11.31468 -11.06941 -10.98968 -10.84271 -10.57292 -10.27260 -9.86503 -9.66689 -9.33303 -8.96505 -8.73714 -8.36514 -7.90174 -6.17928 -4.44372 2.27886 3.06967 3.21262 3.29032 3.30632 3.43892 3.87191 4.03426 4.24738 4.26943 4.54495 4.71858 4.79203 4.92814 5.04649 5.15843 5.21366 5.37295 5.45693 5.60982 5.62912 5.66860 5.70282 5.76371 5.80857 6.07082 6.12314 6.26519 6.33595 6.58310 6.87695 7.35876 7.47046 7.61238 7.86268 8.57765 9.20777 9.38161 10.63284 10.85880 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.005961 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.003148 B = 4695.876180 C = 5041.314775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.252 3.748 3 C -0.183 4.183 4 O -0.363 6.363 5 C 0.209 3.791 6 H 0.108 0.892 7 O -0.346 6.346 8 C 0.037 3.963 9 H 0.079 0.921 10 C 0.235 3.765 11 H 0.062 0.938 12 O -0.550 6.550 13 C -0.605 4.605 14 H 0.054 0.946 15 C 0.106 3.894 16 N -0.835 5.835 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.079 3.921 22 H 0.094 0.906 23 N -0.367 5.367 24 N 0.281 4.719 25 N -0.131 5.131 26 C 0.042 3.958 27 H 0.112 0.888 28 O -0.336 6.336 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.347 0.653 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 15.479 -1.733 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.176 3.824 3 C -0.241 4.241 4 O -0.284 6.284 5 C 0.112 3.888 6 H 0.125 0.875 7 O -0.265 6.265 8 C -0.022 4.022 9 H 0.097 0.903 10 C 0.176 3.824 11 H 0.080 0.920 12 O -0.351 6.351 13 C -0.642 4.642 14 H 0.072 0.928 15 C -0.105 4.105 16 N -0.468 5.468 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.032 4.032 22 H 0.112 0.888 23 N -0.280 5.280 24 N 0.283 4.717 25 N -0.123 5.123 26 C -0.019 4.019 27 H 0.130 0.870 28 O -0.255 6.255 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.190 0.810 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.902 14.783 -1.572 14.894 hybrid contribution 2.075 -0.250 -0.966 2.302 sum 1.173 14.534 -2.538 14.800 Atomic orbital electron populations 1.21793 0.90894 1.04465 1.02559 1.23596 0.95171 0.89168 0.74505 1.22617 1.01920 0.96087 1.03488 1.88892 1.36222 1.68882 1.34451 1.25010 0.87113 0.85477 0.91180 0.87507 1.89049 1.81366 1.15465 1.40650 1.24922 0.96629 0.97735 0.82913 0.90317 1.19628 0.96825 0.81538 0.84360 0.92004 1.86633 1.24925 1.83665 1.39901 1.21448 1.34952 0.94870 1.12954 0.92751 1.24817 0.93413 0.97195 0.95093 1.70055 1.33411 1.09396 1.33894 0.86650 0.79473 0.80103 0.82546 1.19800 1.20735 1.19922 1.23387 0.87366 0.92885 0.99581 0.88788 1.70945 1.19730 0.99996 1.37377 1.41195 1.18735 1.02528 1.09229 1.87491 0.96975 0.94593 1.33204 1.24704 0.88659 0.93545 0.94950 0.87042 1.89022 1.32192 1.70165 1.34136 0.90768 0.90649 0.90413 0.92131 0.90557 0.90626 0.80979 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.30 37.16 0.35 -1.42 16 2 C 0.25 3.54 1.54 -26.73 -0.04 3.50 16 3 C -0.18 -1.86 9.07 37.16 0.34 -1.53 16 4 O -0.36 -6.17 10.84 -67.57 -0.73 -6.90 16 5 C 0.21 3.38 4.94 38.13 0.19 3.57 16 6 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 7 O -0.35 -7.21 11.03 -62.61 -0.69 -7.90 16 8 C 0.04 0.75 2.93 -25.68 -0.08 0.68 16 9 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 10 C 0.23 5.86 2.14 -27.88 -0.06 5.80 16 11 H 0.06 1.77 6.32 -51.93 -0.33 1.44 16 12 O -0.55 -14.38 12.67 -41.01 -0.52 -14.90 16 13 C -0.61 -15.33 5.97 -34.44 -0.21 -15.53 16 14 H 0.05 1.34 7.53 -52.49 -0.40 0.94 16 15 C 0.11 2.79 4.77 -17.82 -0.09 2.71 16 16 N -0.84 -23.69 12.84 55.43 0.71 -22.98 16 17 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 21 C 0.08 1.44 3.30 -66.03 -0.22 1.23 16 22 H 0.09 1.59 8.02 -51.93 -0.42 1.17 16 23 N -0.37 -7.63 9.70 -3.28 -0.03 -7.66 16 24 N 0.28 6.18 7.48 60.35 0.45 6.63 16 25 N -0.13 -3.00 18.32 60.35 1.11 -1.90 16 26 C 0.04 0.62 4.30 -24.91 -0.11 0.52 16 27 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 28 O -0.34 -5.31 9.71 -59.28 -0.58 -5.89 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.35 7.79 9.04 45.56 0.41 8.20 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -31.98 303.85 -4.29 -36.28 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.65 Total: 5.64 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 0.08 Total: -0.48 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 2.24 Total: -25.90 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -2.52 Total: -35.59 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.98 -4.29 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004530905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.383 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds