Wall clock time and date at job start Wed Apr 15 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.99304 * 2 1 4 4 O 1.43510 * 110.00399 * 121.32512 * 2 1 3 5 5 C 1.43816 * 106.56091 * 149.97237 * 4 2 1 6 6 H 1.09003 * 112.26988 * 104.54080 * 5 4 2 7 7 O 1.43801 * 108.76314 * 228.53244 * 5 4 2 8 8 C 1.44305 * 107.18090 * 139.24304 * 7 5 4 9 9 H 1.08999 * 110.62123 * 78.44933 * 8 7 5 10 10 C 1.53008 * 110.62116 * 201.45406 * 8 7 5 11 11 H 1.08991 * 109.47073 * 58.81895 * 10 8 7 12 12 O 1.42902 * 109.46699 * 298.82136 * 10 8 7 13 13 C 1.50701 * 109.47223 * 178.82480 * 10 8 7 14 14 H 1.07997 * 120.00105 * 0.02562 * 13 10 8 15 15 C 1.37871 * 119.99900 * 179.97438 * 13 10 8 16 16 N 1.31519 * 120.00295 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00239 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46824 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47296 * 119.99914 * 17 15 13 20 20 H 1.48495 * 109.47388 * 240.00309 * 17 15 13 21 21 C 1.54990 * 103.48708 * 319.95231 * 8 7 5 22 22 H 1.09001 * 110.87298 * 155.50668 * 21 8 7 23 23 N 1.46500 * 110.87365 * 279.19337 * 21 8 7 24 24 N 1.12400 * 120.00140 * 284.00552 * 23 21 8 25 25 N 5.81071 * 92.32761 * 204.31819 * 2 1 3 26 26 C 1.54616 * 102.11351 * 37.34747 * 21 8 7 27 27 H 1.09001 * 112.34258 * 100.58921 * 26 21 8 28 28 O 1.43567 * 109.24277 * 226.49772 * 26 21 8 29 29 H 1.09000 * 109.47070 * 300.13203 * 1 2 3 30 30 H 1.09008 * 109.46631 * 60.13118 * 1 2 3 31 31 H 1.08993 * 109.47450 * 180.13002 * 1 2 3 32 32 H 1.08994 * 109.47179 * 179.86877 * 3 2 1 33 33 H 1.09002 * 109.46987 * 299.87045 * 3 2 1 34 34 H 1.08999 * 109.46959 * 59.86852 * 3 2 1 35 35 H 0.96697 * 114.00337 * 300.00355 * 12 10 8 36 36 H 0.96991 * 120.00325 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0209 -0.7011 1.1519 5 6 3.2826 -1.2784 0.7736 6 1 4.1285 -0.7340 1.1935 7 8 3.2952 -2.6613 1.1675 8 6 3.9184 -3.4034 0.0982 9 1 5.0025 -3.2971 0.1382 10 6 3.5175 -4.8787 0.1611 11 1 2.4334 -4.9640 0.0878 12 8 3.9567 -5.4391 1.4001 13 6 4.1585 -5.6227 -0.9820 14 1 4.7891 -5.0961 -1.6830 15 6 3.9407 -6.9757 -1.1322 16 7 3.1732 -7.6171 -0.2783 17 14 4.7347 -7.8979 -2.5495 18 1 5.5445 -6.9547 -3.3618 19 1 5.6128 -8.9686 -2.0134 20 1 3.6784 -8.5033 -3.3997 21 6 3.3517 -2.7380 -1.1817 22 1 4.0252 -2.8843 -2.0263 23 7 2.0124 -3.2478 -1.4859 24 7 1.8892 -4.2693 -1.9383 25 7 1.7660 -5.2908 -2.3909 26 6 3.2945 -1.2475 -0.7744 27 1 4.1329 -0.6765 -1.1734 28 8 2.0212 -0.7023 -1.1522 29 1 -0.3633 0.5159 0.8888 30 1 -0.3633 0.5118 -0.8912 31 1 -0.3634 -1.0276 0.0023 32 1 3.1430 1.4279 0.0024 33 1 1.6963 1.9542 -0.8912 34 1 1.6925 1.9556 0.8888 35 1 4.9135 -5.3975 1.5335 36 1 3.0203 -8.5691 -0.3838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004530905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:08 Heat of formation + Delta-G solvation = -83.776735 kcal Electronic energy + Delta-G solvation = -24561.514633 eV Core-core repulsion = 20855.811013 eV Total energy + Delta-G solvation = -3705.703620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.55304 -42.06194 -39.40241 -37.23474 -36.94024 -35.97546 -34.33837 -33.33677 -32.07992 -30.01701 -28.45460 -27.39939 -25.39787 -23.36606 -22.90203 -21.98819 -20.07694 -19.18860 -18.93936 -18.60229 -18.07032 -17.81858 -16.99537 -16.72125 -16.59153 -16.34655 -16.08395 -15.97676 -15.24803 -14.92227 -14.46295 -14.04267 -13.86834 -13.64916 -13.42611 -13.21466 -13.11586 -13.04595 -12.89151 -12.84269 -12.65278 -12.19144 -12.12318 -11.81657 -11.30505 -11.22922 -10.79645 -10.69178 -10.60994 -10.21576 -9.56605 -8.19058 -6.49032 0.65889 1.37838 1.41563 1.48801 1.68537 1.96688 2.36082 2.48157 2.75753 3.10214 3.12589 3.19573 3.57370 3.62231 3.86913 3.88508 4.07444 4.09557 4.23225 4.26652 4.42241 4.52926 4.57382 4.71358 4.75516 4.81500 4.96302 5.07165 5.18763 5.32584 5.39022 5.53510 5.64969 5.88508 6.30089 6.60504 7.28795 7.44197 8.86479 8.95033 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.005961 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.003148 B = 4695.876180 C = 5041.314775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.240 3.760 3 C -0.173 4.173 4 O -0.391 6.391 5 C 0.201 3.799 6 H 0.150 0.850 7 O -0.384 6.384 8 C 0.044 3.956 9 H 0.109 0.891 10 C 0.232 3.768 11 H 0.016 0.984 12 O -0.575 6.575 13 C -0.594 4.594 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.880 5.880 17 Si 0.938 3.062 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.069 3.931 22 H 0.114 0.886 23 N -0.369 5.369 24 N 0.284 4.716 25 N -0.166 5.166 26 C 0.052 3.948 27 H 0.167 0.833 28 O -0.355 6.355 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.360 0.640 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 18.269 -2.644 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 C -0.231 4.231 4 O -0.313 6.313 5 C 0.105 3.895 6 H 0.167 0.833 7 O -0.305 6.305 8 C -0.014 4.014 9 H 0.126 0.874 10 C 0.174 3.826 11 H 0.034 0.966 12 O -0.379 6.379 13 C -0.631 4.631 14 H 0.083 0.917 15 C -0.143 4.143 16 N -0.514 5.514 17 Si 0.763 3.237 18 H -0.183 1.183 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.042 4.042 22 H 0.132 0.868 23 N -0.284 5.284 24 N 0.286 4.714 25 N -0.158 5.158 26 C -0.008 4.008 27 H 0.183 0.817 28 O -0.275 6.275 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.206 0.794 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.950 17.603 -2.493 17.804 hybrid contribution 1.422 -0.998 -0.587 1.834 sum 2.373 16.605 -3.080 17.054 Atomic orbital electron populations 1.21869 0.90841 1.02807 1.04420 1.24071 0.95618 0.90763 0.73123 1.22547 1.02745 0.93003 1.04798 1.88871 1.37003 1.69454 1.36000 1.25577 0.88055 0.83490 0.92378 0.83293 1.88992 1.81866 1.18346 1.41270 1.24646 0.98083 0.94785 0.83934 0.87392 1.19440 0.94325 0.85002 0.83802 0.96593 1.86568 1.26267 1.84442 1.40626 1.21626 1.33948 0.94783 1.12789 0.91710 1.25504 0.93666 0.98250 0.96848 1.70187 1.35598 1.09483 1.36157 0.85822 0.78618 0.79193 0.80062 1.18313 1.20514 1.20393 1.23754 0.85881 0.95167 0.99366 0.86804 1.70866 1.21707 0.99520 1.36295 1.41252 1.18082 1.02609 1.09407 1.87493 0.98838 0.95144 1.34278 1.24994 0.90057 0.91625 0.94125 0.81653 1.88996 1.32859 1.70710 1.34908 0.89107 0.88639 0.93771 0.90778 0.89005 0.89539 0.79427 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.30 71.98 0.67 -2.74 16 2 C 0.24 6.12 1.54 30.59 0.05 6.17 16 3 C -0.17 -2.80 9.07 71.98 0.65 -2.15 16 4 O -0.39 -12.57 10.84 -118.06 -1.28 -13.85 16 5 C 0.20 5.88 4.94 72.61 0.36 6.24 16 6 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 7 O -0.38 -15.58 11.03 -122.80 -1.35 -16.94 16 8 C 0.04 1.73 2.93 31.28 0.09 1.82 16 9 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 10 C 0.23 11.67 2.14 29.85 0.06 11.74 16 11 H 0.02 0.96 6.32 -2.39 -0.02 0.95 16 12 O -0.58 -30.58 12.67 -143.45 -1.82 -32.39 16 13 C -0.59 -29.84 5.97 25.60 0.15 -29.69 16 14 H 0.06 3.06 7.53 -2.91 -0.02 3.04 16 15 C 0.06 3.39 4.77 84.65 0.40 3.80 16 16 N -0.88 -51.23 12.84 21.45 0.28 -50.96 16 17 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 C 0.07 2.35 3.30 46.22 0.15 2.51 16 22 H 0.11 3.47 8.02 -2.39 -0.02 3.45 16 23 N -0.37 -15.26 9.70 -164.28 -1.59 -16.85 16 24 N 0.28 12.67 7.48 37.02 0.28 12.94 16 25 N -0.17 -7.78 18.32 37.02 0.68 -7.10 16 26 C 0.05 1.35 4.30 31.77 0.14 1.48 16 27 H 0.17 2.58 8.14 -2.39 -0.02 2.56 16 28 O -0.35 -10.26 9.71 -125.98 -1.22 -11.48 16 29 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 30 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.36 16.24 9.04 -74.06 -0.67 15.57 16 36 H 0.26 14.65 8.31 -92.72 -0.77 13.88 16 Total: -1.00 -71.97 303.85 -0.83 -72.80 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.45 Total: 20.76 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 2.73 Total: -0.83 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.36 Total: -61.96 kcal Atomic # 8 Polarization: -68.99 SS G_CDS: -5.67 Total: -74.67 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -71.97 -0.83 -72.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004530905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.974 kcal (2) G-P(sol) polarization free energy of solvation -71.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds